TCONS_00003803-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003803-protein
Unique Name	TCONS_00003803-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	625

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003803-protein ID=TCONS_00003803-protein|Name=TCONS_00003803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp
SSYLYAHDKIYKDKTIKTADTNLNKVNFVSSLEYNEYTYFFLREVAEGGD
NRKHIYSRVARLCKYEEMTIFYDQFNSFLKSQLICKKEGTLVPVYYDEIQ
ATTEVRIGDEVYIYAVFSTSSEIGSDSALCRYNMKDISDTFYYSKMSDPT
GKSKDGVDMSNTRNKISRQDCNVNFTSTHGRVDQALVGEVSDNALLFQQV
QPKNDKNEALFTLSTRFSSISSDQIKDNETGEITTVLFVGSVDGQVYKIV
VENDKPRLVEKIRPFKTQGPIYKVEVYDDMVYTGGPNGVAAFGVERCTSN
VLCPDCLSNKDPYCGWVGTSCVLASTSNIKRNVQEASQCPKVPTDFKCSV
TTVQPGVLECNIIKPSNNGPVPSILNWKLGGSDILGHGQDYSVTIDKSHS
TLIIRNLTMDSRGNYKCVIGNADHKTYCAFELEVKDIHTAAPSPPVKPSL
ETTTSAPKPSSETTLPPSTTKEQSTTRPAGGNNDTGLTTDDGTIIKPSGA
PVSQDAENNYFMAFIGTLILLLIILLILLAIVLYRHRRRRAARSHDTDSP
KKTKITNGVLSPKKQKYDISKNDKPPEVCIEMKEEAKLLPKDDSSPVLAN
GGDNKNDEKSEQRNNEEKSSLIVDT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002118	XLOC_002118	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003803	TCONS_00003803	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001627	Semap_dom
IPR016201	PSI
IPR013098	Ig_I-set
IPR013783	Ig-like_fold
IPR015943	WD40/YVTN_repeat-like_dom
IPR007110	Ig-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001627	Sema domain	SMART	SM00630	sema	coord: 1..280 e-value: 3.0E-6 score: -67.0
IPR001627	Sema domain	PFAM	PF01403	Sema	coord: 13..276 e-value: 1.5E-43 score: 149.1
IPR001627	Sema domain	PROSITE	PS51004	SEMA	coord: 1..294 score: 38.794
IPR001627	Sema domain	SUPERFAMILY	101912	Sema domain	coord: 15..292
IPR016201	PSI domain	SMART	SM00423	psinew7	coord: 296..340 e-value: 0.0082 score: 25.3
None	No IPR available	GENE3D	3.30.1680.10		coord: 297..340 e-value: 2.2E-6 score: 27.4
None	No IPR available	GENE3D	1.20.5.900		coord: 511..556 e-value: 0.0015 score: 17.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 441..501
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 540..625
None	No IPR available	CDD	cd00096	Ig	coord: 357..421 e-value: 0.00122517 score: 36.3131
None	No IPR available	SUPERFAMILY	103575	Plexin repeat	coord: 296..338
IPR013098	Immunoglobulin I-set	PFAM	PF07679	I-set	coord: 370..434 e-value: 3.0E-6 score: 27.1
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 341..479 e-value: 2.9E-10 score: 39.7
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 6..296 e-value: 9.1E-46 score: 155.8
IPR007110	Immunoglobulin-like domain	PROSITE	PS50835	IG_LIKE	coord: 340..428 score: 8.139
IPR007110	Immunoglobulin-like domain	SUPERFAMILY	48726	Immunoglobulin	coord: 354..446

Blast

[Close]

BLAST of TCONS_00003803-protein vs. Swiss-Prot (Human)
Match: SEM3F (Semaphorin-3F OS=Homo sapiens GN=SEMA3F PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.665e-23
Identity = 113/459 (24.62%), Postives = 193/459 (42.05%), Query Frame = 0

Query:   39 YFFLREVAEGGDNRKHIYSRVARLCKYEE--MTIFYDQFNSFLKSQLICKKEGT-LVPVYYDE-----IQATTEVRIGDEVYIYAVFSTSSEIGSDSALCRYNMKDISDTF----------------YYSKMSDPT-GKSKDGVDMSNTRNKISRQDCNVNFTSTHGRVDQALVGEVSDNALLFQQVQPKNDKNEALFTLST-RFSSISSDQIKDNETGEITTVLFVGSVDGQVYKIVV-----ENDKPRLVEKIRPFKTQGPIYKVEVYD--DMVYTGGPNGVAAFGVERCTS-NVLCPDCLSNKDPYCGWVGTSCVLASTSNIKRNVQE-------ASQCPKVPTDF-KCSVTTVQPGV------LECNIIKPSNNGPVPSILNWKLGGSDILGHGQDYSVTIDKSHSTLIIRNLTMDSRGNYKCVIGNADHK---TYCAFELEVKDIHTAAPSPPV 446
            YFF RE +        +Y+R+ R+C  ++       +++++FLK++L+C   G   +  ++DE     +Q T +VR      IYAVF++S  +   SA+C Y+M DI   F                +  KM  P  G    G    + ++     D  +NF  +H               L++Q V P   +   + T +  R ++I+ DQ+ D   G    VLF+G+  G V K++V     +  +  ++E++  FK   P+  + +      +Y     GV    + RC +    C DC   +DPYC W G +C   + S+ +R+ ++         QC    ++  K +V +VQ GV      LEC    P     V  +     G        +D  +   ++   L++R L +  RG Y C     + K   T     +  +D   AA  PP+
Sbjct:  276 YFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDVR---NPVIYAVFTSSGSVFRGSAVCVYSMADIRMVFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSH--------------PLMYQAVYPLQRRPLVVRTGAPYRLTTIAVDQV-DAADGRYE-VLFLGTDRGTVQKVIVLPKDDQELEELMLEEVEVFKDPAPVKTMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQACSRYTASSKRRSRRQDVRHGNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSPQAT--VKWLFQRDPGDRRREIRAEDRFL---RTEQGLLLRALQLSDRGLYSCTATENNFKHVVTRVQLHVLGRDAVHAALFPPL 710

The following BLAST results are available for this feature:

BLAST of TCONS_00003803-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003803-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SEM3F	2.665e-23	24.62	Semaphorin-3F OS=Homo sapiens GN=SEMA3F PE=2 SV=2	[more]

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TCONS_00003803-protein (polypeptide) - C. hemisphaerica