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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003731 ID=TCONS_00003731|Name=TCONS_00003731|organism=Clytia hemisphaerica|type=transcript|length=2727bp
TTAGCTCCTGATCTACCAAATGTCGTTCTTTCATCAAATAGCACCTCAAA
AGCCTCCTGTTATGATCCTTGTCCAACCTACTGATCTCGTTGGACGGGCT
CCACAAGCCATCATCGCGCATTCCGCACCTACCTCTATCCAACCTCGCAT
CTCCCCACCGAAAGCCGTATCTCCCATAGGGGTAAACAACTGTTCAACCT
CGAAAAAATATTCTTCGTCCACCTCCCCCTCGCCAGCATCAGCAACCACC
AAGAGGGAGCTAGCATCCTCCCCTCCAGCAGGCATCACAAATCACAGTGC
TCCTACCCCTTGTATGGTAGCAGGTGGTCTTGGAAGTGGTGTTTTCCTAC
ATTTCGACAAAAAATTATCCGATTGTGTCAAACAGTATCCTTGTCTGTAT
GACAGTAAGACTGTTGGGTATAAAGATAAAAAGACAGCAATGAAAGCTTG
GGAACTGGTTGCCAAAGAAGTCGAAGTCGAGAATGgtgAGCACGCACAGA
AATTGTATTTCAATCTGAAAAAGCGATTCCACAAACGCAGAAATTTTCTC
AAACGTCTACAAAGGTCTGGTACCAATAATCACATATTGCTAAAAAAAGC
GCGAAGTGACGTCAGCGTATATGCGTTTCTTGATTGGTTGATTCCCTTCA
CACAAGTCAGACAGCCACGTGTACCTATCAAGCCTGAAGAGGCGAACTTA
CTAGAGGCTAAATATCTAGCTTCTGTTGAAAGTGAAGAATTTTTAGATGA
AAGACCATCTTTTGTTGATCTACATTACAATAATTCAGCTTCTAGTGAGA
GTTTTGAGCATGAAGGTGGCTTATATGTTAAACAGGAAGCCCCGGATGAT
GAGGAAGCAATGTATCTTGGAGATGAAGAGATCATTACAGTTCGTCCATC
AAGTCCAATGAATTCAGCACCAACTCCTCCGTCAAGTTTTGGTAACCATG
GTAATCATAAACAGGAGGAAGATCTACACTCCGATGAGAACCATAATGTC
CCTGAGAAGAGAATTTTGAAAACATCCATTGAAAACACTATTACAGCCAA
CAACCTAAATCACGATGAGTTCACCAGAAAACGTACCAGAGATTCCAGTT
TCACAGATCCTGCTCCATCCTTGACTACAACTCACCCAGAGAATTTAACC
AATAGTCACCACAGACACACACAAGAGCATATTAATAGCAAAAGATCAAA
ATTTACTCTAGAAAATCATGCAGCCGATTCGAAATATTCCGACTTAGAAA
ATGAAGATAATCTTTTTGGTCAAATGGTTGGAGCAGAACTTAAAGGGTTG
CCTTACAAAGAAAGATGTATtgctaaattgaaaattcaaaacatcttaTT
TGATATGCAAATGACTGCATTGAATAAAAGGAACGGTAAATCAGACAGAA
GAGAAAGTCACACTATTTGAATTGGAGAAGAAATGCGGAGAAATCttgaa
ttattgaaagtttaaaaagaagGCCTCCTATCCAGTGGTATGAGCGATTG
CGTGATTGGAATCTTTTCAGGCCGTGATGGAGTGATCAATGAAGTAAGTC
CGGAGAGCTATAAGCGAATCttgacctttctcaagcaagaaaaagtgaag
ccttcaAATATGCGTGGATTGAATCAGCGATTTCATCGTTTTCGGGtggt
atttttttcgaaatttagcggtaaattttagttttaatctggcatttgtg
taaaaactaggcGGTTTCGCGGGTCACGGGTCTANtgtttttgaaagttt
aaaaagaagGCCTCCTATCTAGTGGTATGAGCGATTGCGTGATTGGAATC
TTTTCAGGCCGTGATGGAGTGATCAATGAAGTAAGTCCGGAGAGCTATAA
GCGAATCttgacctttctcaagcaagaaaaagtgaagccttcaAATATGC
GTGGATTGAATCAGCGATTTCATCGTTTTCGGGtggtatttttttcgaaa
tttagcggtaaattttagttttaatctggcatttgtgtaaaaactaggcG
GTTTCGCGGGTCACGGGTCTACCATTACCAAGGAGATttgcttctagccc
ttcgggcttatacttcattagGTGTGATCAAATCATAGACTAAAAGTGAA
AATGTATTGGGTTGTAGGTTTTTGAGTATACTTGCTGGACAAGATTTGCT
GGGTATTAGACCAGCAGGTAACAGATTTACGGTAACGGATGATATATgta
ttttgtaaacaaaaggAAGCCGTATATATTTAGTgacaaaaattgtattt
ttgtctGGTAACATTAATTTAACAGGGTATAATGGCTTTATTGAGCTGAG
AACAAGGAAACCTTTCAAATAACTTTGATTAAGGGGGAATTAGGTGATCA
CATTGAAAAACTAcagcattatttttcttttaatgatAATGCCATCTAAA
CAATATTTTACAACACAGCTGTTACTTAGAGGCAAACTTATTAATCCCGT
TTGTACTGGCCGAGGGAAAataatgtatgtggagtaatttgttattcaat
ggACCGTCGTGTTTGACTAAAGATAAATAGAGTCTGAAGCTTTACTATTA
AGGAAAAAATGATTTACAAGAGTCAGACTTCAATTTAATACACTCAgatt
tatctttccaatggagaaaactttttgattaggaaaattgtttttttgca
aaGGCGCATTTTTTATTTAGGTTTTGTACATATCAAGAGGAAAAGTAAGA
GGTATTTTTTAAACACTAACCCAAGGG Run BLAST on NCBI transcript from alignment at sc0000031:342608..346536+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003731 ID=TCONS_00003731|Name=TCONS_00003731|organism=Clytia hemisphaerica|type=transcript|length=3929bp|location=Sequence derived from alignment at sc0000031:342608..346536+ (Clytia hemisphaerica)
TTAGCTCCTGATCTACCAAATGTCGTTCTTTCATCAAATGTAggttattt
ggaaaattttggttATCAGTTGCACTTGCTCTACCGGGTGACCaatcaaa
accatttttaaactttgtttAAGAAGTTTTTTGTGAATCACCtttttata
caccttttcgaccgtagccgccaattgccgcgcgggcattttttgtccgt
tttaccaccctaaaaccgtcccagcctttttttcgcacctaaagacaata
ggaattatattatgctgatataagcttCTTTCTGAACAATCTTGCTCTAC
ATACGTGTCAACCCattgtgaaaaagcttgtaaattacaAGTGAtgtaag
caaacaatatcactttcatttaaaaaaaaacctttagaCAAAGAATGCAG
TGAGATTACgtaatattatttttctttacacTTTAGAGCACCTCAAAAGC
CTCCTGTTATGATCCTTGTCCAACCTACTGATCTCGTTGGACGGGCTCCA
CAAGCCATCATCGCGCATTCCGCACCTACCTCTATCCAACCTCGCATCTC
CCCACCGAAAGCCGTATCTCCCATAGGGGTAAACAACTGTTCAACCTCGA
AAAAATATTCTTCGTCCACCTCCCCCTCGCCAGCATCAGCAACCACCAAG
AGGGAGCTAGCATCCTCCCCTCCAGCAGGCATCACAAATCACAGTGCTCC
TACCCCTTGTATGGTAGCAGGTGGTCTTGGAAGTGGTGTTTTCCTACATT
TCGACAAAAAATTATCCGATTGTGTCAAACAGTATCCTTGTCTGTATGAC
AGTAAGACTGTTGGGTATAAAGATAAAAAGACAGCAATGAAAGCTTGGGA
ACTGGTTGCCAAAGAAGTCGAAGTCGAGAATGGTGAGCACACATTGTTTC
TATAACAGCCTCAAAGTGAAATTTAGTCAAAACCTGAAAGTAAATTAAGC
TGGTGGCACTGACCTTGAcagccgacggggacgtgctgctgaagtttaaa
aaataaacCCTATACACATCTTAAAAATTTAGTACATTTGGGAcgctgtc
agatatcttcagagcttaaaaaagggaccctgaccagcggcacgtctcTT
TAACCGATTTTGTCAAAGCGTCCCCTCGGTCTGAGCCTCAGacttgaaag
tttcaaaaaatcgattgtaagtttcactttcactttcatttttaggtgAG
CACGCACAGAAATTGTATTTCAATCTGAAAAAGCGATTCCACAAACGCAG
AAATTTTCTCAAACGTCTACAAAGGTCTGGTACCAATAATCACATATTGC
TAAAAAAAGCNAAGATAAAAAGACAGCAATGAAAGCTTGGGAACTGGTTG
CCAAAGAAGTCGAAGTCGAGAATGGTGAGCACACATTGTTTCTATAACAG
CCTCAAAGTGAAATTTAGTCAAAACCTGAAAGCAAATTAAGCCGGTGGCA
CTGACCTTGAcagccgacggggacgtgctgctgaagtttaaaaaataaac
CCTATACACATCTTAAAaatttagtaaatttgggacgctgtcagatatct
tcagagcttaaaaaagggaccctgaccagcggcacgtctcTTTAACCAAT
TTTGTCAAAGTGTCCCCTCGGTCTGAGCCTCAGacttgaaagtttcaaaa
aatcgattgtaagtttcactttcactttcatttttaggtgAGCACGCACA
GAAATTGTATTTCAATCTGAAAAAGCGATTCCACAAACGCAGAAATTTTC
TCAAACGTCTACAAAGGTCTGGTACCAATAATCACATATTGCTAAAAAAA
GCGCGAAGTGACGTCAGCGTATATGCGTTTCTTGATTGGTTGATTCCCTT
CACACAAGTCAGACAGCCACGTGTACCTATCAAGCCTGAAGAGGCGAACT
TACTAGAGGCTAAATATCTAGCTTCTGTTGAAAGTGAAGAATTTTTAGAT
GAAAGACCATCTTTTGTTGATCTACATTACAATAATTCAGCTTCTAGTGA
GAGTTTTGAGCATGAAGGTGGCTTATATGTTAAACAGGAAGCCCCGGATG
ATGAGGAAGCAATGTATCTTGGAGATGAAGAGATCATTACAGTTCGTCCA
TCAAGTCCAATGAATTCAGCACCAACTCCTCCGTCAAGTTTTGGTAACCA
TGGTAATCATAAACAGGAGGAAGATCTACACTCCGATGAGAACCATAATG
TCCCTGAGAAGAGAATTTTGAAAACATCCATTGAAAACACTATTACAGCC
AACAACCTAAATCACGATGAGTTCACCAGAAAACGTACCAGAGATTCCAG
TTTCACAGATCCTGCTCCATCCTTGACTACAACTCACCCAGAGAATTTAA
CCAATAGTCACCACAGACACACACAAGAGCATATTAATAGCAAAAGATCA
AAATTTACTCTAGAAAATCATGCAGCCGATTCGAAATATTCCGACTTAGA
AAATGAAGATAATCTTTTTGGTCAAATGGTTGGAGCAGAACTTAAAGGGT
TGCCTTACAAAGAAAGATGTATtgctaaattgaaaattcaaaacatctta
TTTGATATGCAAATGACTGCATTGAATAAAAGGAACGGTAAATCAGACAG
AAGAGAAAGTCACACTATTTGAATTGGAGAAGAAATGCGGAGAAATCttg
aattattgaaagtttaaaaagaagGCCTCCTATCCAGTGGTATGAGCGAT
TGCGTGATTGGAATCTTTTCAGGCCGTGATGGAGTGATCAATGAAGTAAG
TCCGGAGAGCTATAAGCGAATCttgacctttctcaagcaagaaaaagtga
agccttcaAATATGCGTGGATTGAATCAGCGATTTCATCGTTTTCGGGtg
gtatttttttcgaaatttagcggtaaattttagttttaatctggcatttg
tgtaaaaactaggcGGTTTCGCGGGTCACGGGTCTANtgtttttgaaagt
ttaaaaagaagGCCTCCTATCTAGTGGTATGAGCGATTGCGTGATTGGAA
TCTTTTCAGGCCGTGATGGAGTGATCAATGAAGTAAGTCCGGAGAGCTAT
AAGCGAATCttgacctttctcaagcaagaaaaagtgaagccttcaAATAT
GCGTGGATTGAATCAGCGATTTCATCGTTTTCGGGtggtatttttttcga
aatttagcggtaaattttagttttaatctggcatttgtgtaaaaactagg
cGGTTTCGCGGGTCACGGGTCTACCATTACCAAGGAGATttgcttctagc
ccttcgggcttatacttcattagGTGTGATCAAATCATAGACTAAAAGTG
AAAATGTATTGGGTTGTAGGTTTTTGAGTATACTTGCTGGACAAGATTTG
CTGGGTATTAGACCAGCAGGTAACAGATTTACGGTAACGGATGATATATg
tattttgtaaacaaaaggAAGCCGTATATATTTAGTgacaaaaattgtat
ttttgtctGGTAACATTAATTTAACAGGGTATAATGGCTTTATTGAGCTG
AGAACAAGGAAACCTTTCAAATAACTTTGATTAAGGGGGAATTAGGTGAT
CACATTGAAAAACTAcagcattatttttcttttaatgatAATGCCATCTA
AACAATATTTTACAACACAGCTGTTACTTAGAGGCAAACTTATTAATCCC
GTTTGTACTGGCCGAGGGAAAataatgtatgtggagtaatttgttattca
atggACCGTCGTGTTTGACTAAAGATAAATAGAGTCTGAAGCTTTACTAT
TAAGGAAAAAATGATTTACAAGAGTCAGACTTCAATTTAATACACTCAga
tttatctttccaatggagaaaactttttgattaggaaaattgtttttttg
caaaGGCGCATTTTTTATTTAGGTTTTGTACATATCAAGAGGAAAAGTAA
GAGGTATTTTTTAAACACTAACCCAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003731-exon-sc0000031-1491911889:342608..342646 | TCONS_00003731-exon-sc0000031-1491911889:342608..342646 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1510915933:342608..342646 | TCONS_00003731-exon-sc0000031-1510915933:342608..342646 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1575043694:342608..342646 | TCONS_00003731-exon-sc0000031-1575043694:342608..342646 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1491911889:343044..343489 | TCONS_00003731-exon-sc0000031-1491911889:343044..343489 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1510915933:343044..343489 | TCONS_00003731-exon-sc0000031-1510915933:343044..343489 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1575043694:343044..343489 | TCONS_00003731-exon-sc0000031-1575043694:343044..343489 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1491911889:344295..346536 | TCONS_00003731-exon-sc0000031-1491911889:344295..346536 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1510915933:344295..346536 | TCONS_00003731-exon-sc0000031-1510915933:344295..346536 | Clytia hemisphaerica | exon |
| TCONS_00003731-exon-sc0000031-1575043694:344295..346536 | TCONS_00003731-exon-sc0000031-1575043694:344295..346536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:342608..346536 + |
Blast
The following BLAST results are available for this feature:
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