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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003636 ID=TCONS_00003636|Name=TCONS_00003636|organism=Clytia hemisphaerica|type=transcript|length=2923bpRun BLAST on NCBI protein sequence of TCONS_00003636-protein >TCONS_00003636-protein ID=TCONS_00003636-protein|Name=TCONS_00003636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp MMEEHKETESLLQNENVNDDDIEPKGDDYTIEEAIERIGFGKFQLKLLAMRun BLAST on NCBI transcript from alignment at sc0000030:420233..436176- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003636 ID=TCONS_00003636|Name=TCONS_00003636|organism=Clytia hemisphaerica|type=transcript|length=15944bp|location=Sequence derived from alignment at sc0000030:420233..436176- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:420233..436176- >TCONS_00003636 ID=TCONS_00003636|Name=TCONS_00003636|organism=Clytia hemisphaerica|type=CDS|length=21126bp|location=Sequence derived from alignment at sc0000030:420233..436176- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003636 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1) HSP 1 Score: 325.865 bits (834), Expect = 3.117e-99 Identity = 197/483 (40.79%), Postives = 279/483 (57.76%), Query Frame = 3
Query: 81 ETESLLQNENVNDDDIEPKGDDYTIEEAIERIGFGKFQLKLLAMVGFAWSADSLEMALLAILAPAVRCEWHLSHYHEAMLTTIVFIGMLIFSYFWGWASDTYGRRKVLIWSTTGVFVFGLVSAFSHTYVMILLLRGGVGASMAGTVQGTTLIVEYLPVAARGLSINVSGIFWSAGTCFEVLSAMYIMPRHGWRVLLFWSAWPCLIFVVATLLSKQPPESVRFLVSKGRQKEAEEILHXXXXXXXXXXXLQGNLITLEKEQSEYKHGSFSGLFKRGYWRQTLLLWVMWFASHFNIYGXXXXXXXXXXXXXXCYGEPAAKKHETE---NCKPLTQADYLHFFYVLAADFPAILVTAILTDTVGRKWLQAIGFFVMGIFFTLLLLCTSSRNWTTFFLFGVRCFAAVADVGGYIYTPEVYPTEIRGIALGSCSAISRIGAMLTPFVSQVLTHTNLSLSLSIYIGFSIIGGVCSLLLPIETKGKGLEE 1520
E L V + P D + +E+A+E IGFGKFQ KL + G AW AD++EM +L+ILAP + CEW L + A+LT++VF+GM+ S WG SD YGR+ L S +G++SAF+ Y IL+LRG VG + G Q TL E+LP+ AR I + +FW+ GT FEV+ A+++MP GWR LL SA P L+F V L PES R+ V G Q++A L + A EN L G LI +E G LF + TLLLW +WF++ F+ YGL LLTT LF + C K E + C+ L++ DY+ + ++FP +LVT + D +GRK A+ F + F +LLL RN T LF R F + Y+YTPEVYPT R + LG+CS ++R+GA++TPF++QV+ +++ L+L++Y G ++ + S LPIETKG+GL+E
Sbjct: 46 EAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAV---LCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPL-GKLIISRQED----RGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFS-FCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519 The following BLAST results are available for this feature:
BLAST of TCONS_00003636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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