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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003624 ID=TCONS_00003624|Name=TCONS_00003624|organism=Clytia hemisphaerica|type=transcript|length=1557bpRun BLAST on NCBI protein sequence of TCONS_00003624-protein >TCONS_00003624-protein ID=TCONS_00003624-protein|Name=TCONS_00003624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp QEKPLQPLWLSGRLKITHDMKMSNNKKKNNASLMHKEQEFKDLNAALEEKRun BLAST on NCBI transcript from alignment at sc0000030:345020..358756- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003624 ID=TCONS_00003624|Name=TCONS_00003624|organism=Clytia hemisphaerica|type=transcript|length=13737bp|location=Sequence derived from alignment at sc0000030:345020..358756- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:345020..358756- >TCONS_00003624 ID=TCONS_00003624|Name=TCONS_00003624|organism=Clytia hemisphaerica|type=CDS|length=16674bp|location=Sequence derived from alignment at sc0000030:345020..358756- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003624 vs. Swiss-Prot (Human)
Match: TEX9 (Testis-expressed protein 9 OS=Homo sapiens GN=TEX9 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 9.271e-52 Identity = 140/399 (35.09%), Postives = 215/399 (53.88%), Query Frame = 2
Query: 98 LMHKEQEFKDLNAALEEKTASLINDVESVLRGQELFFNDLHSTEKDLSDMSLGTQSIDGTEANTTEDSLXXXXXXXXXXXXXXXXXGPVTGAKKREMKQNGRPKTSINTIHGKETSPLNLVSDRAAFADR---------INTLEMEAADDLYTP----------------SHLNEGVLPE--------AANELSSDATIRFLKAKLRVMQEELENVANECRQKASKVTELQSEMK---ESNMQQTNLLKKNEQLQKTIEXXXXXXXXXXXXNSDLESDVTSLKKELDGTKRSNKQSSANRNTLEVRLNRALEEVEKYKQALKKSKESTKAVNDTDRKCLDQLQNENKRLESQKNDLMIAFKKQLKLIDILKRQKMHIEAAKMLEFTEEEFIRALDWNNT 1186
L+ E+E+K LNA L+ KTA ++ + ++R ++ + ST+ +S D + + L P G + +PKT K P+N V ++ A++ + +++ ADD+ P L E LPE +N++ ++A IRFLKAKL VMQEEL+NV EC +K ++ L+S++K E M+Q + N Q Q +EK K L + K L+ ++S+++EL+ +R KQ++++++ EVRLNRALEE EKYK L K +++ K + + + K ++ L++ENK+LE QK +LMI FKKQLKLID+LKRQKMHIEAAKML FTEEEF++AL+W N+
Sbjct: 32 LLALEEEYKRLNAELQAKTADVVQQAKEIIRDRQEVRSRPVSTQ---------MKSCDDEDDYSLRGLL------------------PSEGI--VHLHSETKPKT-------KNIDPVNKVQNKLHSANKGRKTNSSVKLKYSDVQTADDVAIPEDFSDFSLAKTISKIEGQLEEEGLPEYIDDIFSGVSNDIGTEAQIRFLKAKLHVMQEELDNVVCECNKKEDEIQNLKSQVKNFEEDFMRQQRTI--NMQ-QSQVEKYKTLFEEANKKYDGLQQQLSSVERELENKRRLQKQAASSQSATEVRLNRALEEAEKYKLELSKLRQNNKDIANEEHKKIEVLKSENKKLEKQKGELMIGFKKQLKLIDVLKRQKMHIEAAKMLSFTEEEFMKALEWGNS 391 The following BLAST results are available for this feature:
BLAST of TCONS_00003624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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