|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003610 ID=TCONS_00003610|Name=TCONS_00003610|organism=Clytia hemisphaerica|type=transcript|length=3205bpRun BLAST on NCBI protein sequence of T-box transcription factor 2-3 >TCONS_00003610-protein ID=TCONS_00003610-protein|Name=T-box transcription factor 2-3|organism=Clytia hemisphaerica|type=polypeptide|length=643bp VDSWLRWIEGFCVKIRGVKMEPNYGENFEQQQNKFEEKKIGPTTELQDDPRun BLAST on NCBI transcript from alignment at sc0000030:264251..274476- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003610 ID=TCONS_00003610|Name=TCONS_00003610|organism=Clytia hemisphaerica|type=transcript|length=10226bp|location=Sequence derived from alignment at sc0000030:264251..274476- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:264251..274476- >TCONS_00003610 ID=TCONS_00003610|Name=TCONS_00003610|organism=Clytia hemisphaerica|type=CDS|length=17388bp|location=Sequence derived from alignment at sc0000030:264251..274476- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003610 vs. Swiss-Prot (Human)
Match: TBX2 (T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3) HSP 1 Score: 287.345 bits (734), Expect = 4.645e-83 Identity = 128/214 (59.81%), Postives = 164/214 (76.64%), Query Frame = 3
Query: 531 PPAQYLDYGKHCNVDDDDENRPVVTLENKSLWQEFHEVGTEMIITKTGRRMFPPIKFRISNLEPKTKYILIMDIIPADDCRYKFSRGAWLIAGKADPPMPKRMFIHPDGPNTGNQWMSKSISFNKMKVTNCVQGKNGYPILNSMHKYQPRFHIAKVADFYKMNMSNLKTFVFRETEFLAVTAYQNEKVTKLKIKYNPFAKGFREDGAAGKRISR 1172
PPA +L K +D+ E+ P VTLE K LW +FH++GTEM+ITK+GRRMFPP K R+S L+ K KYIL+MDI+ ADDCRYKF W++AGKADP MPKRM+IHPD P TG QWM+K ++F+K+K+TN + K+G+ ILNSMHKYQPRFHI + D K+ S +T+VF ET+F+AVTAYQN+K+T+LKI NPFAKGFR+ G G+R R
Sbjct: 84 PPAAHLRSLKSLEPEDEVEDDPKVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTG-NGRREKR 296 The following BLAST results are available for this feature:
BLAST of TCONS_00003610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.