T-box transcription factor 2-3 (polypeptide) - C. hemisphaerica

Overview


Name	T-box transcription factor 2-3
Unique Name	TCONS_00003610-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	643

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003610-protein ID=TCONS_00003610-protein|Name=T-box transcription factor 2-3|organism=Clytia hemisphaerica|type=polypeptide|length=643bp
VDSWLRWIEGFCVKIRGVKMEPNYGENFEQQQNKFEEKKIGPTTELQDDP
SKEEYYIPPPPPPPPSTTPTTGQYQLNVIQSSVGLPQPVPPTQQTHPECS
PPPQNLWNQPSNNSIPNYSYYPPTAPSFYSAPGTGPATQDLPPPPQFNNQ
SSEYNMYYPALSPSTGPSTFGPGGAMPPAQYLDYGKHCNVDDDDENRPVV
TLENKSLWQEFHEVGTEMIITKTGRRMFPPIKFRISNLEPKTKYILIMDI
IPADDCRYKFSRGAWLIAGKADPPMPKRMFIHPDGPNTGNQWMSKSISFN
KMKVTNCVQGKNGYPILNSMHKYQPRFHIAKVADFYKMNMSNLKTFVFRE
TEFLAVTAYQNEKVTKLKIKYNPFAKGFREDGAAGKRISRIENNESDGEE
EKSTSHQNKKTKFSPTPNELKGKHKLDESPESGISSLNSTPSKMRFKDTI
SPPTHISSYESHIKSRRFLSPTAMFTSSRDQFFSSRDFSPRDEFRYHYNP
AASPSPSPSFENYLPQNTSANSVLPMVLPGSIYSSGNPQNTVNTPGTEYN
NGASFHDHVGAGKSLKKQLQLNTELLSSTSSQWQNFGSYTTPTTNVGSPY
TQNNYFSSTPNYGRYGSTPLCRHGLAHCAVCSYSSSILNSANL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002012	XLOC_002012	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003610	TCONS_00003610	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001699	TF_T-box
IPR018186	TF_T-box_CS
IPR008967	p53-like_TF_DNA-bd

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001699	Transcription factor, T-box	PRINTS	PR00937	TBOX	coord: 280..293 score: 57.3 coord: 215..239 score: 60.35 coord: 372..380 score: 82.61 coord: 316..330 score: 72.46 coord: 351..364 score: 68.94 coord: 297..306 score: 58.48
IPR001699	Transcription factor, T-box	SMART	SM00425	tbox5	coord: 197..385 e-value: 1.2E-105 score: 367.0
IPR001699	Transcription factor, T-box	PFAM	PF00907	T-box	coord: 200..380 e-value: 4.2E-77 score: 258.4
IPR001699	Transcription factor, T-box	GENE3D	2.60.40.820		coord: 194..386 e-value: 2.6E-87 score: 291.0
IPR001699	Transcription factor, T-box	PROSITE	PS50252	TBOX_3	coord: 202..380 score: 72.611
IPR001699	Transcription factor, T-box	CDD	cd00182	TBOX	coord: 200..382 e-value: 7.79742E-108 score: 325.311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..453
IPR018186	Transcription factor, T-box, conserved site	PROSITE	PS01283	TBOX_1	coord: 207..226
IPR018186	Transcription factor, T-box, conserved site	PROSITE	PS01264	TBOX_2	coord: 281..299
IPR008967	p53-like transcription factor, DNA-binding	SUPERFAMILY	49417	p53-like transcription factors	coord: 200..380

Blast

[Close]

BLAST of T-box transcription factor 2-3 vs. Swiss-Prot (Human)
Match: TBX2 (T-box transcription factor TBX2 OS=Homo sapiens GN=TBX2 PE=1 SV=3)

HSP 1 Score: 289.271 bits (739), Expect = 4.156e-88
Identity = 142/285 (49.82%), Postives = 185/285 (64.91%), Query Frame = 0

Query:  107 WNQPSNNSIPNYSYYPPTAPSFYSAPGTGPATQDLP-PPPQFNNQSSEYNMYYPALSPSTGPSTFGPGGAMPPAQYLDYGKHCNVDDDDENRPVVTLENKSLWQEFHEVGTEMIITKTGRRMFPPIKFRISNLEPKTKYILIMDIIPADDCRYKFSRGAWLIAGKADPPMPKRMFIHPDGPNTGNQWMSKSISFNKMKVTNCVQGKNGYPILNSMHKYQPRFHIAKVADFYKMNMSNLKTFVFRETEFLAVTAYQNEKVTKLKIKYNPFAKGFREDGAAGKRISR 390
            ++ P     P  ++     PSF+ A    P     P P P     ++       A       S  GP    PPA +L   K    +D+ E+ P VTLE K LW +FH++GTEM+ITK+GRRMFPP K R+S L+ K KYIL+MDI+ ADDCRYKF    W++AGKADP MPKRM+IHPD P TG QWM+K ++F+K+K+TN +  K+G+ ILNSMHKYQPRFHI +  D  K+  S  +T+VF ET+F+AVTAYQN+K+T+LKI  NPFAKGFR+ G  G+R  R
Sbjct:   16 FHAPRPADFPMSAFLAAAQPSFFPALALPPGALAKPLPDPGLAGAAAAAAAAAAAAEAGLHVSALGP---HPPAAHLRSLKSLEPEDEVEDDPKVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTG-NGRREKR 296

The following BLAST results are available for this feature:

BLAST of T-box transcription factor 2-3 vs. Swiss-Prot (Human)

BLAST of T-box transcription factor 2-3 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBX2	4.156e-88	49.82	T-box transcription factor TBX2 OS=Homo sapiens GN...	[more]

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T-box transcription factor 2-3 (polypeptide) - C. hemisphaerica