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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003605 ID=TCONS_00003605|Name=TCONS_00003605|organism=Clytia hemisphaerica|type=transcript|length=1552bp
gaaaaaataaagaatttttatcAAGTAAAGACATTGAGAAACCTGAAGGA
TTTGTACCAAGTGTAGACATCGGAAAACCTGATGTCATGGAGAATGATTG
TGGAAACCAAAAAATAGAAGGAGCGGAAAAAGTCGATGGTcgtcctgaaa
aaaagaaaagcaaatcaTTGAATActggaaacaaagaaaatgacaACATC
TTGAAAGCTGTTCGTGAATCCACTGATCCCGACTCTTACCCAAACAAACT
TCCCGGATATTTCCTTTTAATcaacaatgaaaattttttggAAATGGACA
AACGAACTGGCACAGATATTGACGCAAGGAGTATAACAGTTTTATTCCAA
GATATGGGTTTTACTATAGAAGAGCACAAAGATTTGTTATCTTATAAAAT
GAGACAAGTCTTGCAAGAAGCAGGCGAAAGGAGTTATGCGAAATATTCCT
GTCTTATCATTTGCATTTTAAGTCATGGCAAGGAAGGTGAAATATATGCT
GTTGATGAAACAATTCCTGTTAAAGAGATAACACTGTGTTTTCATGGATC
AAACCTAGGTGGGAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAAGGTA
GAGCTTTCATGAATACAGTTCAACCTCGTGAAATATTGGCATCAAATAGG
CCACCGGAGGACAATGATGAGCCACCACCAGAAGATAGGAATTCTGAAGA
TCTGAGCGAAAAACTCTCGTCAAAAGAAGAAAGTTCTCGTATCATAACAT
TGCCTTCTGAAGCTGATTTCTTGTATGCTTATTCAACTGCATTTGGCTTT
AGATCGTTTAGAGGCCCGAAATCTGGTTCATTCAATCCTTTTGTGAAATT
GTACGTAAGCAAGCTCTAACCATGGATGTTATCCGAATACTGACTCGAGT
CAATTTAATGATATGTAGTAAACAATCCAAAACAAAACGCCAGGTTGTCT
CAGTAGTTACTCAATTAAGGAAAGAATTCTTTTTACCAATCCACCTCGAA
AAGACTGCTGCGGATAGTATAACGTGTTGACGAATGGATGGTTAcgtaga
ctagcaagcgtctgtctttcctcgTACACAGGAACGTGGGAATgttgctt
ataataaagatttcttattaaaaatagaaattgccgcgggagagtggttt
ggaaagaCATTTGTATTCAGTGAAGATATAGACATAGAGCCCATTGCAtg
tttaatctgcagcgaaatacaacgacgtggtttactagtctaatgGTAAC
GAGgtttttcataaagtttttaaTGTCGTACTGGGTCTATTGCGCAAGTT
TTACGCGGGTTTTTGAGAAGTTACGGGCTAAAAGTCATGAAATCTCAGAC
ATGGGATTGTCGAAACGCAAGTCCTCGATATCGATTATTTTACATGATTG
AAATTTCTTGGCGAGGCCTAAAAATCTGTTCACCCCtggcgatatcactt
agtgcTTTACAAGGAAGGAGCTATTTATTTTTCTGTATTCGTTTTGTAAG
TAGTATATGCTCGTAAGTGTAATGTAGTTTCCCAAATTATGAAGAAAAGA
AG Run BLAST on NCBI transcript from alignment at sc0000030:254204..260975- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003605 ID=TCONS_00003605|Name=TCONS_00003605|organism=Clytia hemisphaerica|type=transcript|length=6772bp|location=Sequence derived from alignment at sc0000030:254204..260975- (Clytia hemisphaerica)
GAAAAAATAAAGAATTTTTATCAAGTAAAGACATTGAGAAACCTGAAGGA
TTTGTACCAAGTGTAGACATCGGAAAACCTGATGTCATGGAGAATGATTG
TGGAAACCAAAAAATAGAAGGAGGTAAAATAATTAAGGTTCACTGTGAAT
CGGAAATGCTATAGTGGGCCGTCAACATAGTACGTACGCACTAAAATGTC
GAAAATCGAGTACCCCTCTCCCCCTTAATGCGTACGTACTATGTGGACGG
CCCCTAGGTTAAATGATAGGTTGTAGTTCTGCAAGCTTCTTCATATATTC
ATGTTCCACCTATCAGTAAAGAGACATTCCTTGGGACCATTCTTTAATTT
CCTGAGTGGATTTTCTTTTGCTCATTCGATAAAGAAGAATGTCTTCAGGG
ACTAAATAAAGTGAAAATTACATATTATATATTTTAAGATATCAAAAGTT
AATCGTTTGGAAAACCTTTTTCGATAAGACTATTTTTACCACCAAAATAT
ATATTACCTGTCTTAGTACTTTTAATTGACTGAAGTGGAAGTGGTGAAAC
AAATTCTTGTAGATTCAGGGAAATCAATGATTAAGTGACTTTTATCAATT
GCTTTTTAGCGGAAAAAGTCGATGGTCGTCCTGAAAAAAAGAAAAGCAAA
TCATTGAATACTGGAAACAAAGAAAATGACAACATCTTGAAAGCTGTTCG
TGAATCCACTGATCCCGACTCTTACCCAAACAAACTTCCCGGATATTTCC
TTTTAATCAACAATGAAAATTTTTTGGGTAAATATAACCTTTTTTTAGTT
CAGACTATTGGCAAATAAATCGTATTCAAAGCCAACACTTTTTAAATATC
TGTTGAGAGTGTTACAACCGTCCAAGAGCGCTTAGAACCTAAGAGATACA
GCACTACTTCCTTTAAGCTGAAAAGATCCGGTCCCTTTACTATAAAGTCT
ACTGCATTTTAAATCTTTCGAAATATTTTTTTTAACCTTTCCTCTATTCA
TAATTCTACAGAATTACAATCGAAATATATTGAGACTTTAGTGTACCTTA
AAGTTTTTCAGAATTTAAAGCTCGGGCCAGAATTGCTATTTTAGCACTTC
CACTTTCTTCCATTGAATATTTCGATTTTTGAGGGGTTCGGTGGCTTTTA
GGCTTTATTCCAAGCCTGATCGAAACAATTCTGAGCTTTTAAATCCTGAG
ATCCTGAGGTCCTAAGTCGTAAGTCACATGTTAAAACTCAGAGTTAGAAT
TCTACTTTCCAACTGTAGTTTAAGGCGCTTAAAAATCATTTGTGGTGTTT
AAAATTTAACAGGAAAATCCCCTTTGTCTCAAATATTTTACGTGGGATTG
TAGATAAACGAACTGACACTGATGACACTGTTAAGAGACTAGGGTTATGG
CTCTGAGTGACACTCCTCCCTTTAAGCTGGGCAGGTCTTTTTACCATAAG
GTTCCCATGCTATATTTTAAAGCCTGCTTTCGTGGTTTTAATTTATTTTC
AACCTTTCCTTTAATTACCCATCCTACAGAAATGGACAAACGAACTGGCA
CAGATATTGACGCAAGGAGTATAACAGTTTTATTCCAAGATATGGGTTTT
ACTATAGAAGAGCACAAAGATTTGTTATCTTATAAAATGAGACAAGTCTT
GCAAGAAGCAGGCGAAAGGAGTTATGCGAAATATTCCTGTCTTATCATTT
GCATTTTAAGTCATGGCAAGGAAGGTGAAATATATGCTGTTGATGAAACA
ATTCCTGTTAAAGAGATAACACTGTGTTTTCATGGATCAAACCTAGGTGG
GAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAAGGTATATCTCTTTGTC
TGTTATTTATTTTCTCCTTATTGAATAATAAACTTTCTTTCAAATTAAGG
CCTTTTCGATCATATTAATTTATTTATTTTCACCCAACTTATCCTCAAAT
CCACAAATTGAGGCTTAGATTTCGTTTCAAAGCCCTTGTCATTTGTCCCA
AATTTTTAAGTTTATTTATCATGATTTATGTAACAGACATGGCAATTTAA
AAAAGAACGCCAGGCTAACGAATTATACCACATTGACTTTCAAGCCCGCT
AGACACGAAACTCCTGGATGGGAAATGAAGTCACTTGTTTCCCATACTAA
ACACCTGACCCACGCGGTTTTCACACAAAAGCTACAATCATCGACAAAAT
ATTTGAGACAGCGGGGATTTCTAGGCGAACTTTTAAACACCACAAATAAT
TTTTAAGCGGAAAGTAGAGTTTTAACTCTGACTTTTAACATGAGACTTAA
GATAAAGGACTTTAAGATCTCAGGATTTAAAAGCTCAAATTTTCTCTGAT
AAGGCTTGGAATATAGATTAGAAGCCACTGAACACCTCTAAAATCGAAAT
ATTTAGTGAAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCACCGGAACT
TTAAATTCTGAAAAGCGTTAAAATACACTAAAATCTCATTATATCGCGAT
CAAGATTTCGAAAAATATGAAAACTAAGTTGTGCTAGATTCAATCCGTTA
TTCTAAATGCGAATCTTAATGCTTCACCATTTCTTGCTTGAGAAAGGTTG
GAAATTTATCTCTAGTAGTGGGGTCGTCTAGCATAATTTACGGGAAAACA
ATAAGATCTAGCTGAAACTTTCTCCAGACTTTCTCTATAGGATGGTTATG
CCTCAGGAAAAATTCCCCTAAAATCCCACTGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCATTATCAAGTATACCATTCGAAAGCTCTCGAAAAACTATATAG
AAGACTTTTAAACGGGTATAGCCGATTTCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTCGAGTTAGGTAAGGAAATCAGCTATAACCGTTTAAAAGTC
TTCTATATAGTTTTTCGAGAGCTTTCGAATGGTATACATGATTTTGTCTG
GAAATAAGTTTAAAATTTTCAAAAAATTACGCCCTTAGGATTTTGCCTGG
GGAAAATAGAAATGTCCCAAAAAAGGGATGTTCCACCAGTGGGATTTTAG
GGGAATTTTTCCTGAGGTATAAGCATCCTATAGAGAAGGTCTGGAGGAAG
TTTCAGCTAGATCTTATTTTTTTCCTACAAACAGCCTGTATTTTTGTAAC
ACGACCACACTATAGCCCCTTCGGGGCTTTAAAACTCAATGCGATAACAC
TACCTGATAAAAAAAAAACATCTCCAATATAGAAGACCTCTTCTCACACA
ATTCACCATTTTCTCTCTTAACCAGGTAGAGCTTTCATGAATACAGTTCA
ACCTCGTGAAATATTGGCATCAAATAGGCCACCGGAGGACAATGATGAGC
CACCACCAGAAGATAGGAATTCTGAAGATCTGAGCGAAAAACTCTCGTCA
AAAGAAGAAAGTTCTCGTATCATAACATTGCCTTCTGAAGCTGATTTCTT
GTATGCTTATTCAACTGCATTTGGCTTTAGATCGTTTAGAGGCCCGAAAT
CTGGTACTTGGTAAGAAAAAACTAATTTTCCTTTTGTTGTTATAAAGTGA
TAAATTTATTATCAAAGCTTTTTTTTCTGAAATCGACTACATTTGGTTCT
AAAGTCTGTCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAACTT
TTGATAGTCAAATATGATTATGGAAATTTTTTTTGCTTGTTTTAGAGAAT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAACACTAAACACAGTGGTCATGTTCA
GACCAAGGTTTAAAGCAATTAGGTCTACATGTTTCTTTTATATTCCTTTT
GTATTCAACGGCACGCTTCTCATTAGTTAAACCAAAGTTTAAAAAGGAAT
CACCCTCTGGTTTAAAAAAAAAGTTTTTACGATTTTGTTACAGTTTTCTG
AATATAGACGAAATCAGAATTTGCGAGTGAAAAGCATGCTCCTTTTGTAA
ATGAAGAAAAAAGAACGTGACATTTATGACTTAGAGACGCTTGGAGCATC
TCTAGCAGTAATGGCTTCAACGAACACGAATTAGTGTTTTGCAGAGGGAT
TCCCTGAAATCTTTTTTGTTTCAAAGTATCTCAAGAGAGAAAATGACATG
ATTTCAAGTTAGGAAAGGAGATTCCTCGAGATCGCCAATCGATGATGACA
AAAGAAAAGTGATTATAATTGAATTCCCATACCAACAAAGTACTACTTAA
ACCTTAAACTTAAACTTTCAGGTCTGAACACGACCAGTTTGGCTATGAGG
TCATTAAAGAGATCGTAAAATGTGTTATGATCGAAAAACTGTTTTATCAT
ATCACTACCCCCGTTTTTAGTAATANAATTTCATGGGAAAAGAGTATCTA
GTCAAATTGGGTACATGTTTGGGGTTACAAGAATCAATCTTCTCAGCAAT
AGATAATTTGAAGAAGATTTTCAAAAATGATTTCTCCATTTTCAGGTTCA
TTCAATCCTTTTGTGAAATTGTACGTAAGCAAGCTCTAACCATGGATGTT
ATCCGAATACTGACTCGAGTCAATTTAATGATATGTAGTAAACAATCCAA
AACAAAACGCCAGGTTGTCTCAGTAGTTACTCAATTAAGGAAAGAATTCT
TTTTACCAATCCACCTCGAAAAGACTGCTGCGGATAGTATAACGTGTTGA
CGAATGGATGGTTACGTAGACTAGCAAGCGTCTGTCTTTCCTCGTACACA
GGAACGTGGGAATGTTGCTTATAATAAAGATTTCTTATTAAAAATAGAAA
TTGCCGCGGGAGAGTGGTTTGGAAAGACATTTGTATTCAGTGAAGATATA
GACATAGAGCCCATTGCATGTTTAATCTGCAGCGAAATACAACGACGTGG
TTTACTAGTCTAATGGTAACGAGGTTTTTCATAAAGTTTTTAATGTCGTA
CTGGGTCTATTGCGCAAGTTTTACGCGGGTTTTTGAGAAGTTACGGGCTA
AAAGTCATGAAATCTCAGACATGGGATTGTCGAAACGCAAGTCCTCGATA
TCGATTATTTTACATGATTGAAATTTCTTGGCGAGGCCTAAAAATCTGTT
CACCCCTGGCGATATCACTTAGTGCTTTACAAGGAAGGAGCTATTTATTT
TTCTGTATTCGTTTTGTAAGTAGTATATGCTCGTAAGTGTAATGTAGTTT
CCCAAATTATGAAGAAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00003605-exon-sc0000030-1575043694:260853..260975 | TCONS_00003605-exon-sc0000030-1575043694:260853..260975 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1575043694:260199..260366 | TCONS_00003605-exon-sc0000030-1575043694:260199..260366 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1575043694:259141..259446 | TCONS_00003605-exon-sc0000030-1575043694:259141..259446 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1575043694:257073..257300 | TCONS_00003605-exon-sc0000030-1575043694:257073..257300 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1575043694:254204..254930 | TCONS_00003605-exon-sc0000030-1575043694:254204..254930 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1510915933:260853..260975 | TCONS_00003605-exon-sc0000030-1510915933:260853..260975 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1510915933:260199..260366 | TCONS_00003605-exon-sc0000030-1510915933:260199..260366 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1510915933:259141..259446 | TCONS_00003605-exon-sc0000030-1510915933:259141..259446 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1510915933:257073..257300 | TCONS_00003605-exon-sc0000030-1510915933:257073..257300 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1510915933:254204..254930 | TCONS_00003605-exon-sc0000030-1510915933:254204..254930 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1491911889:260853..260975 | TCONS_00003605-exon-sc0000030-1491911889:260853..260975 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1491911889:260199..260366 | TCONS_00003605-exon-sc0000030-1491911889:260199..260366 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1491911889:259141..259446 | TCONS_00003605-exon-sc0000030-1491911889:259141..259446 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1491911889:257073..257300 | TCONS_00003605-exon-sc0000030-1491911889:257073..257300 | Clytia hemisphaerica | exon |
| TCONS_00003605-exon-sc0000030-1491911889:254204..254930 | TCONS_00003605-exon-sc0000030-1491911889:254204..254930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:254204..260975 - |
Blast
BLAST of TCONS_00003605 vs. Swiss-Prot (Human)
Match: CASP7 (Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.721e-23 Identity = 76/258 (29.46%), Postives = 121/258 (46.90%), Query Frame = 3
Query: 126 EKVDGRPEKKK-SKSLNTGNKENDNI--LKAVRESTDPDSYPNKLP--GYFLLINNENFLE---MDKRTGTDIDARSITVLFQDMGFTIEEHKDLLSYKMRQVLQEAGERSYAKYSCLIICILSHGKEGEIYAVDETIPVKEITLCFHGS---NLGGKPKIFLLQACQGRAFMNTVQPREILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIITLPSEADFLYAYSTAFGFRSFRGPKSGSFNPFVKLYVSKL 866
+ VD +P++ SL + K+N + +K R+ Y G ++INN+NF + M R GTD DA ++ F+ +GF + + D KM+ +L++A E + +C +LSHG+E IY D P+K++T F G L KPK+F +QAC+G + +Q + +++ +P EADFL+AYST G+ S+R P GS+ FV+ S L
Sbjct: 20 DSVDAKPDRSSFVPSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQ--------------------------ADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSW--FVQALCSIL 249
The following BLAST results are available for this feature:
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