TCONS_00003604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003604
Unique NameTCONS_00003604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003604 ID=TCONS_00003604|Name=TCONS_00003604|organism=Clytia hemisphaerica|type=transcript|length=1559bp
gaaaaaataaagaatttttatcAAGTAAAGACATTGAGAAACCTGAAGGA
TTTGTACCAAGTGTAGACATCGGAAAACCTGATGTCATGGAGAATGATTG
TGGAAACCAAAAAATAGAAGGAGCGGAAAAAGTCGATGGTcgtcctgaaa
aaaagaaaagcaaatcaTTGAATActggaaacaaagaaaatgacaACATC
TTGAAAGCTGTTCGTGAATCCACTGATCCCGACTCTTACCCAAACAAACT
TCCCGGATATTTCCTTTTAATcaacaatgaaaattttttggAAATGGACA
AACGAACTGGCACAGATATTGACGCAAGGAGTATAACAGTTTTATTCCAA
GATATGGGTTTTACTATAGAAGAGCACAAAGATTTGTTATCTTATAAAAT
GAGACAAGTCTTGCAAGAAGCAGGCGAAAGGAGTTATGCGAAATATTCCT
GTCTTATCATTTGCATTTTAAGTCATGGCAAGGAAGGTGAAATATATGCT
GTTGATGAAACAATTCCTGTTAAAGAGATAACACTGTGTTTTCATGGATC
AAACCTAGGTGGGAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAAGGTA
GAGCTTTCATGAATACAGTTCAACCTCGTGAAATATTGGCATCAAATAGG
CCACCGGAGGACAATGATGAGCCACCACCAGAAGATAGGAATTCTGAAGA
TCTGAGCGAAAAACTCTCGTCAAAAGAAGAAAGTTCTCGTATCATAACAT
TGCCTTCTGAAGCTGATTTCTTGTATGCTTATTCAACTGCATTTGGCTTT
AGATCGTTTAGAGGCCCGAAATCTGGTACTTGGTTCATTCAATCCTTTTG
TGAAATTGTACGTAAGCAAGCTCTAACCATGGATGTTATCCGAATACTGA
CTCGAGTCAATTTAATGATATGTAGTAAACAATCCAAAACAAAACGCCAG
GTTGTCTCAGTAGTTACTCAATTAAGGAAAGAATTCTTTTTACCAATCCA
CCTCGAAAAGACTGCTGCGGATAGTATAACGTGTTGACGAATGGATGGTT
AcgtagactagcaagcgtctgtctttcctcgTACACAGGAACGTGGGAAT
gttgcttataataaagatttcttattaaaaatagaaattgccgcgggaga
gtggtttggaaagaCATTTGTATTCAGTGAAGATATAGACATAGAGCCCA
TTGCAtgtttaatctgcagcgaaatacaacgacgtggtttactagtctaa
tgGTAACGAGgtttttcataaagtttttaaTGTCGTACTGGGTCTATTGC
GCAAGTTTTACGCGGGTTTTTGAGAAGTTACGGGCTAAAAGTCATGAAAT
CTCAGACATGGGATTGTCGAAACGCAAGTCCTCGATATCGATTATTTTAC
ATGATTGAAATTTCTTGGCGAGGCCTAAAAATCTGTTCACCCCtggcgat
atcacttagtgcTTTACAAGGAAGGAGCTATTTATTTTTCTGTATTCGTT
TTGTAAGTAGTATATGCTCGTAAGTGTAATGTAGTTTCCCAAATTATGAA
GAAAAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00003604-protein

>TCONS_00003604-protein ID=TCONS_00003604-protein|Name=TCONS_00003604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
KNKEFLSSKDIEKPEGFVPSVDIGKPDVMENDCGNQKIEGAEKVDGRPEK
KKSKSLNTGNKENDNILKAVRESTDPDSYPNKLPGYFLLINNENFLEMDK
RTGTDIDARSITVLFQDMGFTIEEHKDLLSYKMRQVLQEAGERSYAKYSC
LIICILSHGKEGEIYAVDETIPVKEITLCFHGSNLGGKPKIFLLQACQGR
AFMNTVQPREILASNRPPEDNDEPPPEDRNSEDLSEKLSSKEESSRIITL
PSEADFLYAYSTAFGFRSFRGPKSGTWFIQSFCEIVRKQALTMDVIRILT
RVNLMICSKQSKTKRQVVSVVTQLRKEFFLPIHLEKTAADSITC
Run BLAST on NCBI

transcript from alignment at sc0000030:254204..260975-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003604 ID=TCONS_00003604|Name=TCONS_00003604|organism=Clytia hemisphaerica|type=transcript|length=6772bp|location=Sequence derived from alignment at sc0000030:254204..260975- (Clytia hemisphaerica)
GAAAAAATAAAGAATTTTTATCAAGTAAAGACATTGAGAAACCTGAAGGA
TTTGTACCAAGTGTAGACATCGGAAAACCTGATGTCATGGAGAATGATTG
TGGAAACCAAAAAATAGAAGGAGGTAAAATAATTAAGGTTCACTGTGAAT
CGGAAATGCTATAGTGGGCCGTCAACATAGTACGTACGCACTAAAATGTC
GAAAATCGAGTACCCCTCTCCCCCTTAATGCGTACGTACTATGTGGACGG
CCCCTAGGTTAAATGATAGGTTGTAGTTCTGCAAGCTTCTTCATATATTC
ATGTTCCACCTATCAGTAAAGAGACATTCCTTGGGACCATTCTTTAATTT
CCTGAGTGGATTTTCTTTTGCTCATTCGATAAAGAAGAATGTCTTCAGGG
ACTAAATAAAGTGAAAATTACATATTATATATTTTAAGATATCAAAAGTT
AATCGTTTGGAAAACCTTTTTCGATAAGACTATTTTTACCACCAAAATAT
ATATTACCTGTCTTAGTACTTTTAATTGACTGAAGTGGAAGTGGTGAAAC
AAATTCTTGTAGATTCAGGGAAATCAATGATTAAGTGACTTTTATCAATT
GCTTTTTAGCGGAAAAAGTCGATGGTCGTCCTGAAAAAAAGAAAAGCAAA
TCATTGAATACTGGAAACAAAGAAAATGACAACATCTTGAAAGCTGTTCG
TGAATCCACTGATCCCGACTCTTACCCAAACAAACTTCCCGGATATTTCC
TTTTAATCAACAATGAAAATTTTTTGGGTAAATATAACCTTTTTTTAGTT
CAGACTATTGGCAAATAAATCGTATTCAAAGCCAACACTTTTTAAATATC
TGTTGAGAGTGTTACAACCGTCCAAGAGCGCTTAGAACCTAAGAGATACA
GCACTACTTCCTTTAAGCTGAAAAGATCCGGTCCCTTTACTATAAAGTCT
ACTGCATTTTAAATCTTTCGAAATATTTTTTTTAACCTTTCCTCTATTCA
TAATTCTACAGAATTACAATCGAAATATATTGAGACTTTAGTGTACCTTA
AAGTTTTTCAGAATTTAAAGCTCGGGCCAGAATTGCTATTTTAGCACTTC
CACTTTCTTCCATTGAATATTTCGATTTTTGAGGGGTTCGGTGGCTTTTA
GGCTTTATTCCAAGCCTGATCGAAACAATTCTGAGCTTTTAAATCCTGAG
ATCCTGAGGTCCTAAGTCGTAAGTCACATGTTAAAACTCAGAGTTAGAAT
TCTACTTTCCAACTGTAGTTTAAGGCGCTTAAAAATCATTTGTGGTGTTT
AAAATTTAACAGGAAAATCCCCTTTGTCTCAAATATTTTACGTGGGATTG
TAGATAAACGAACTGACACTGATGACACTGTTAAGAGACTAGGGTTATGG
CTCTGAGTGACACTCCTCCCTTTAAGCTGGGCAGGTCTTTTTACCATAAG
GTTCCCATGCTATATTTTAAAGCCTGCTTTCGTGGTTTTAATTTATTTTC
AACCTTTCCTTTAATTACCCATCCTACAGAAATGGACAAACGAACTGGCA
CAGATATTGACGCAAGGAGTATAACAGTTTTATTCCAAGATATGGGTTTT
ACTATAGAAGAGCACAAAGATTTGTTATCTTATAAAATGAGACAAGTCTT
GCAAGAAGCAGGCGAAAGGAGTTATGCGAAATATTCCTGTCTTATCATTT
GCATTTTAAGTCATGGCAAGGAAGGTGAAATATATGCTGTTGATGAAACA
ATTCCTGTTAAAGAGATAACACTGTGTTTTCATGGATCAAACCTAGGTGG
GAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAAGGTATATCTCTTTGTC
TGTTATTTATTTTCTCCTTATTGAATAATAAACTTTCTTTCAAATTAAGG
CCTTTTCGATCATATTAATTTATTTATTTTCACCCAACTTATCCTCAAAT
CCACAAATTGAGGCTTAGATTTCGTTTCAAAGCCCTTGTCATTTGTCCCA
AATTTTTAAGTTTATTTATCATGATTTATGTAACAGACATGGCAATTTAA
AAAAGAACGCCAGGCTAACGAATTATACCACATTGACTTTCAAGCCCGCT
AGACACGAAACTCCTGGATGGGAAATGAAGTCACTTGTTTCCCATACTAA
ACACCTGACCCACGCGGTTTTCACACAAAAGCTACAATCATCGACAAAAT
ATTTGAGACAGCGGGGATTTCTAGGCGAACTTTTAAACACCACAAATAAT
TTTTAAGCGGAAAGTAGAGTTTTAACTCTGACTTTTAACATGAGACTTAA
GATAAAGGACTTTAAGATCTCAGGATTTAAAAGCTCAAATTTTCTCTGAT
AAGGCTTGGAATATAGATTAGAAGCCACTGAACACCTCTAAAATCGAAAT
ATTTAGTGAAAGAAAGTGGAAGTGCTAAAATAGCAATTCTCACCGGAACT
TTAAATTCTGAAAAGCGTTAAAATACACTAAAATCTCATTATATCGCGAT
CAAGATTTCGAAAAATATGAAAACTAAGTTGTGCTAGATTCAATCCGTTA
TTCTAAATGCGAATCTTAATGCTTCACCATTTCTTGCTTGAGAAAGGTTG
GAAATTTATCTCTAGTAGTGGGGTCGTCTAGCATAATTTACGGGAAAACA
ATAAGATCTAGCTGAAACTTTCTCCAGACTTTCTCTATAGGATGGTTATG
CCTCAGGAAAAATTCCCCTAAAATCCCACTGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCATTATCAAGTATACCATTCGAAAGCTCTCGAAAAACTATATAG
AAGACTTTTAAACGGGTATAGCCGATTTCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTCGAGTTAGGTAAGGAAATCAGCTATAACCGTTTAAAAGTC
TTCTATATAGTTTTTCGAGAGCTTTCGAATGGTATACATGATTTTGTCTG
GAAATAAGTTTAAAATTTTCAAAAAATTACGCCCTTAGGATTTTGCCTGG
GGAAAATAGAAATGTCCCAAAAAAGGGATGTTCCACCAGTGGGATTTTAG
GGGAATTTTTCCTGAGGTATAAGCATCCTATAGAGAAGGTCTGGAGGAAG
TTTCAGCTAGATCTTATTTTTTTCCTACAAACAGCCTGTATTTTTGTAAC
ACGACCACACTATAGCCCCTTCGGGGCTTTAAAACTCAATGCGATAACAC
TACCTGATAAAAAAAAAACATCTCCAATATAGAAGACCTCTTCTCACACA
ATTCACCATTTTCTCTCTTAACCAGGTAGAGCTTTCATGAATACAGTTCA
ACCTCGTGAAATATTGGCATCAAATAGGCCACCGGAGGACAATGATGAGC
CACCACCAGAAGATAGGAATTCTGAAGATCTGAGCGAAAAACTCTCGTCA
AAAGAAGAAAGTTCTCGTATCATAACATTGCCTTCTGAAGCTGATTTCTT
GTATGCTTATTCAACTGCATTTGGCTTTAGATCGTTTAGAGGCCCGAAAT
CTGGTACTTGGTAAGAAAAAACTAATTTTCCTTTTGTTGTTATAAAGTGA
TAAATTTATTATCAAAGCTTTTTTTTCTGAAATCGACTACATTTGGTTCT
AAAGTCTGTCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAACTT
TTGATAGTCAAATATGATTATGGAAATTTTTTTTGCTTGTTTTAGAGAAT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAACACTAAACACAGTGGTCATGTTCA
GACCAAGGTTTAAAGCAATTAGGTCTACATGTTTCTTTTATATTCCTTTT
GTATTCAACGGCACGCTTCTCATTAGTTAAACCAAAGTTTAAAAAGGAAT
CACCCTCTGGTTTAAAAAAAAAGTTTTTACGATTTTGTTACAGTTTTCTG
AATATAGACGAAATCAGAATTTGCGAGTGAAAAGCATGCTCCTTTTGTAA
ATGAAGAAAAAAGAACGTGACATTTATGACTTAGAGACGCTTGGAGCATC
TCTAGCAGTAATGGCTTCAACGAACACGAATTAGTGTTTTGCAGAGGGAT
TCCCTGAAATCTTTTTTGTTTCAAAGTATCTCAAGAGAGAAAATGACATG
ATTTCAAGTTAGGAAAGGAGATTCCTCGAGATCGCCAATCGATGATGACA
AAAGAAAAGTGATTATAATTGAATTCCCATACCAACAAAGTACTACTTAA
ACCTTAAACTTAAACTTTCAGGTCTGAACACGACCAGTTTGGCTATGAGG
TCATTAAAGAGATCGTAAAATGTGTTATGATCGAAAAACTGTTTTATCAT
ATCACTACCCCCGTTTTTAGTAATANAATTTCATGGGAAAAGAGTATCTA
GTCAAATTGGGTACATGTTTGGGGTTACAAGAATCAATCTTCTCAGCAAT
AGATAATTTGAAGAAGATTTTCAAAAATGATTTCTCCATTTTCAGGTTCA
TTCAATCCTTTTGTGAAATTGTACGTAAGCAAGCTCTAACCATGGATGTT
ATCCGAATACTGACTCGAGTCAATTTAATGATATGTAGTAAACAATCCAA
AACAAAACGCCAGGTTGTCTCAGTAGTTACTCAATTAAGGAAAGAATTCT
TTTTACCAATCCACCTCGAAAAGACTGCTGCGGATAGTATAACGTGTTGA
CGAATGGATGGTTACGTAGACTAGCAAGCGTCTGTCTTTCCTCGTACACA
GGAACGTGGGAATGTTGCTTATAATAAAGATTTCTTATTAAAAATAGAAA
TTGCCGCGGGAGAGTGGTTTGGAAAGACATTTGTATTCAGTGAAGATATA
GACATAGAGCCCATTGCATGTTTAATCTGCAGCGAAATACAACGACGTGG
TTTACTAGTCTAATGGTAACGAGGTTTTTCATAAAGTTTTTAATGTCGTA
CTGGGTCTATTGCGCAAGTTTTACGCGGGTTTTTGAGAAGTTACGGGCTA
AAAGTCATGAAATCTCAGACATGGGATTGTCGAAACGCAAGTCCTCGATA
TCGATTATTTTACATGATTGAAATTTCTTGGCGAGGCCTAAAAATCTGTT
CACCCCTGGCGATATCACTTAGTGCTTTACAAGGAAGGAGCTATTTATTT
TTCTGTATTCGTTTTGTAAGTAGTATATGCTCGTAAGTGTAATGTAGTTT
CCCAAATTATGAAGAAAAGAAG

Coding sequence (CDS) from alignment at sc0000030:254204..260975-

>TCONS_00003604 ID=TCONS_00003604|Name=TCONS_00003604|organism=Clytia hemisphaerica|type=CDS|length=5175bp|location=Sequence derived from alignment at sc0000030:254204..260975- (Clytia hemisphaerica)
GTTCATTCAATCCTTTTGTGAAATTGTACGTAAGCAAGCTCTAACCATGG
ATGTTATCCGAATACTGACTCGAGTCAATTTAATGATATGTAGTAAACAA
TCCAAAACAAAACGCCAGGTTGTCTCAGTAGTTACTCAATTAAGGAAAGA
ATTCTTTTTACCAATCCACCTCGAAAAGACTGCTGCGGATAGTATAACGT
GTTGAGTAGAGCTTTCATGAATACAGTTCAACCTCGTGAAATATTGGCAT
CAAATAGGCCACCGGAGGACAATGATGAGCCACCACCAGAAGATAGGAAT
TCTGAAGATCTGAGCGAAAAACTCTCGTCAAAAGAAGAAAGTTCTCGTAT
CATAACATTGCCTTCTGAAGCTGATTTCTTGTATGCTTATTCAACTGCAT
TTGGCTTTAGATCGTTTAGAGGCCCGAAATCTGGTACTTGAAATGGACAA
ACGAACTGGCACAGATATTGACGCAAGGAGTATAACAGTTTTATTCCAAG
ATATGGGTTTTACTATAGAAGAGCACAAAGATTTGTTATCTTATAAAATG
AGACAAGTCTTGCAAGAAGCAGGCGAAAGGAGTTATGCGAAATATTCCTG
TCTTATCATTTGCATTTTAAGTCATGGCAAGGAAGGTGAAATATATGCTG
TTGATGAAACAATTCCTGTTAAAGAGATAACACTGTGTTTTCATGGATCA
AACCTAGGTGGGAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAAGCGGA
AAAAGTCGATGGTCGTCCTGAAAAAAAGAAAAGCAAATCATTGAATACTG
GAAACAAAGAAAATGACAACATCTTGAAAGCTGTTCGTGAATCCACTGAT
CCCGACTCTTACCCAAACAAACTTCCCGGATATTTCCTTTTAATCAACAA
TGAAAATTTTTTGGAAAAATAAAGAATTTTTATCAAGTAAAGACATTGAG
AAACCTGAAGGATTTGTACCAAGTGTAGACATCGGAAAACCTGATGTCAT
GGAGAATGATTGTGGAAACCAAAAAATAGAAGGAGGTTCATTCAATCCTT
TTGTGAAATTGTACGTAAGCAAGCTCTAACCATGGATGTTATCCGAATAC
TGACTCGAGTCAATTTAATGATATGTAGTAAACAATCCAAAACAAAACGC
CAGGTTGTCTCAGTAGTTACTCAATTAAGGAAAGAATTCTTTTTACCAAT
CCACCTCGAAAAGACTGCTGCGGATAGTATAACGTGTTGAGTAGAGCTTT
CATGAATACAGTTCAACCTCGTGAAATATTGGCATCAAATAGGCCACCGG
AGGACAATGATGAGCCACCACCAGAAGATAGGAATTCTGAAGATCTGAGC
GAAAAACTCTCGTCAAAAGAAGAAAGTTCTCGTATCATAACATTGCCTTC
TGAAGCTGATTTCTTGTATGCTTATTCAACTGCATTTGGCTTTAGATCGT
TTAGAGGCCCGAAATCTGGTACTTGAAATGGACAAACGAACTGGCACAGA
TATTGACGCAAGGAGTATAACAGTTTTATTCCAAGATATGGGTTTTACTA
TAGAAGAGCACAAAGATTTGTTATCTTATAAAATGAGACAAGTCTTGCAA
GAAGCAGGCGAAAGGAGTTATGCGAAATATTCCTGTCTTATCATTTGCAT
TTTAAGTCATGGCAAGGAAGGTGAAATATATGCTGTTGATGAAACAATTC
CTGTTAAAGAGATAACACTGTGTTTTCATGGATCAAACCTAGGTGGGAAA
CCGAAGATCTTCCTTCTCCAAGCTTGCCAAGCGGAAAAAGTCGATGGTCG
TCCTGAAAAAAAGAAAAGCAAATCATTGAATACTGGAAACAAAGAAAATG
ACAACATCTTGAAAGCTGTTCGTGAATCCACTGATCCCGACTCTTACCCA
AACAAACTTCCCGGATATTTCCTTTTAATCAACAATGAAAATTTTTTGGA
AAAATAAAGAATTTTTATCAAGTAAAGACATTGAGAAACCTGAAGGATTT
GTACCAAGTGTAGACATCGGAAAACCTGATGTCATGGAGAATGATTGTGG
AAACCAAAAAATAGAAGGAGGTTCATTCAATCCTTTTGTGAAATTGTACG
TAAGCAAGCTCTAACCATGGATGTTATCCGAATACTGACTCGAGTCAATT
TAATGATATGTAGTAAACAATCCAAAACAAAACGCCAGGTTGTCTCAGTA
GTTACTCAATTAAGGAAAGAATTCTTTTTACCAATCCACCTCGAAAAGAC
TGCTGCGGATAGTATAACGTGTTGAGTAGAGCTTTCATGAATACAGTTCA
ACCTCGTGAAATATTGGCATCAAATAGGCCACCGGAGGACAATGATGAGC
CACCACCAGAAGATAGGAATTCTGAAGATCTGAGCGAAAAACTCTCGTCA
AAAGAAGAAAGTTCTCGTATCATAACATTGCCTTCTGAAGCTGATTTCTT
GTATGCTTATTCAACTGCATTTGGCTTTAGATCGTTTAGAGGCCCGAAAT
CTGGTACTTGAAATGGACAAACGAACTGGCACAGATATTGACGCAAGGAG
TATAACAGTTTTATTCCAAGATATGGGTTTTACTATAGAAGAGCACAAAG
ATTTGTTATCTTATAAAATGAGACAAGTCTTGCAAGAAGCAGGCGAAAGG
AGTTATGCGAAATATTCCTGTCTTATCATTTGCATTTTAAGTCATGGCAA
GGAAGGTGAAATATATGCTGTTGATGAAACAATTCCTGTTAAAGAGATAA
CACTGTGTTTTCATGGATCAAACCTAGGTGGGAAACCGAAGATCTTCCTT
CTCCAAGCTTGCCAAGCGGAAAAAGTCGATGGTCGTCCTGAAAAAAAGAA
AAGCAAATCATTGAATACTGGAAACAAAGAAAATGACAACATCTTGAAAG
CTGTTCGTGAATCCACTGATCCCGACTCTTACCCAAACAAACTTCCCGGA
TATTTCCTTTTAATCAACAATGAAAATTTTTTGGAAAAATAAAGAATTTT
TATCAAGTAAAGACATTGAGAAACCTGAAGGATTTGTACCAAGTGTAGAC
ATCGGAAAACCTGATGTCATGGAGAATGATTGTGGAAACCAAAAAATAGA
AGGAGGTTCATTCAATCCTTTTGTGAAATTGTACGTAAGCAAGCTCTAAC
CATGGATGTTATCCGAATACTGACTCGAGTCAATTTAATGATATGTAGTA
AACAATCCAAAACAAAACGCCAGGTTGTCTCAGTAGTTACTCAATTAAGG
AAAGAATTCTTTTTACCAATCCACCTCGAAAAGACTGCTGCGGATAGTAT
AACGTGTTGAGTAGAGCTTTCATGAATACAGTTCAACCTCGTGAAATATT
GGCATCAAATAGGCCACCGGAGGACAATGATGAGCCACCACCAGAAGATA
GGAATTCTGAAGATCTGAGCGAAAAACTCTCGTCAAAAGAAGAAAGTTCT
CGTATCATAACATTGCCTTCTGAAGCTGATTTCTTGTATGCTTATTCAAC
TGCATTTGGCTTTAGATCGTTTAGAGGCCCGAAATCTGGTACTTGAAATG
GACAAACGAACTGGCACAGATATTGACGCAAGGAGTATAACAGTTTTATT
CCAAGATATGGGTTTTACTATAGAAGAGCACAAAGATTTGTTATCTTATA
AAATGAGACAAGTCTTGCAAGAAGCAGGCGAAAGGAGTTATGCGAAATAT
TCCTGTCTTATCATTTGCATTTTAAGTCATGGCAAGGAAGGTGAAATATA
TGCTGTTGATGAAACAATTCCTGTTAAAGAGATAACACTGTGTTTTCATG
GATCAAACCTAGGTGGGAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAA
GCGGAAAAAGTCGATGGTCGTCCTGAAAAAAAGAAAAGCAAATCATTGAA
TACTGGAAACAAAGAAAATGACAACATCTTGAAAGCTGTTCGTGAATCCA
CTGATCCCGACTCTTACCCAAACAAACTTCCCGGATATTTCCTTTTAATC
AACAATGAAAATTTTTTGGAAAAATAAAGAATTTTTATCAAGTAAAGACA
TTGAGAAACCTGAAGGATTTGTACCAAGTGTAGACATCGGAAAACCTGAT
GTCATGGAGAATGATTGTGGAAACCAAAAAATAGAAGGAGGTTCATTCAA
TCCTTTTGTGAAATTGTACGTAAGCAAGCTCTAACCATGGATGTTATCCG
AATACTGACTCGAGTCAATTTAATGATATGTAGTAAACAATCCAAAACAA
AACGCCAGGTTGTCTCAGTAGTTACTCAATTAAGGAAAGAATTCTTTTTA
CCAATCCACCTCGAAAAGACTGCTGCGGATAGTATAACGTGTTGAGTAGA
GCTTTCATGAATACAGTTCAACCTCGTGAAATATTGGCATCAAATAGGCC
ACCGGAGGACAATGATGAGCCACCACCAGAAGATAGGAATTCTGAAGATC
TGAGCGAAAAACTCTCGTCAAAAGAAGAAAGTTCTCGTATCATAACATTG
CCTTCTGAAGCTGATTTCTTGTATGCTTATTCAACTGCATTTGGCTTTAG
ATCGTTTAGAGGCCCGAAATCTGGTACTTGAAATGGACAAACGAACTGGC
ACAGATATTGACGCAAGGAGTATAACAGTTTTATTCCAAGATATGGGTTT
TACTATAGAAGAGCACAAAGATTTGTTATCTTATAAAATGAGACAAGTCT
TGCAAGAAGCAGGCGAAAGGAGTTATGCGAAATATTCCTGTCTTATCATT
TGCATTTTAAGTCATGGCAAGGAAGGTGAAATATATGCTGTTGATGAAAC
AATTCCTGTTAAAGAGATAACACTGTGTTTTCATGGATCAAACCTAGGTG
GGAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAAGCGGAAAAAGTCGAT
GGTCGTCCTGAAAAAAAGAAAAGCAAATCATTGAATACTGGAAACAAAGA
AAATGACAACATCTTGAAAGCTGTTCGTGAATCCACTGATCCCGACTCTT
ACCCAAACAAACTTCCCGGATATTTCCTTTTAATCAACAATGAAAATTTT
TTGGAAAAATAAAGAATTTTTATCAAGTAAAGACATTGAGAAACCTGAAG
GATTTGTACCAAGTGTAGACATCGGAAAACCTGATGTCATGGAGAATGAT
TGTGGAAACCAAAAAATAGAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002011XLOC_002011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003604-exon-sc0000030-1575043694:260853..260975TCONS_00003604-exon-sc0000030-1575043694:260853..260975Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1575043694:260199..260366TCONS_00003604-exon-sc0000030-1575043694:260199..260366Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1575043694:259141..259446TCONS_00003604-exon-sc0000030-1575043694:259141..259446Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1575043694:257066..257300TCONS_00003604-exon-sc0000030-1575043694:257066..257300Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1575043694:254204..254930TCONS_00003604-exon-sc0000030-1575043694:254204..254930Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1510915933:260853..260975TCONS_00003604-exon-sc0000030-1510915933:260853..260975Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1510915933:260199..260366TCONS_00003604-exon-sc0000030-1510915933:260199..260366Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1510915933:259141..259446TCONS_00003604-exon-sc0000030-1510915933:259141..259446Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1510915933:257066..257300TCONS_00003604-exon-sc0000030-1510915933:257066..257300Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1510915933:254204..254930TCONS_00003604-exon-sc0000030-1510915933:254204..254930Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1491911889:260853..260975TCONS_00003604-exon-sc0000030-1491911889:260853..260975Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1491911889:260199..260366TCONS_00003604-exon-sc0000030-1491911889:260199..260366Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1491911889:259141..259446TCONS_00003604-exon-sc0000030-1491911889:259141..259446Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1491911889:257066..257300TCONS_00003604-exon-sc0000030-1491911889:257066..257300Clytia hemisphaericaexon
TCONS_00003604-exon-sc0000030-1491911889:254204..254930TCONS_00003604-exon-sc0000030-1491911889:254204..254930Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003604-proteinTCONS_00003604-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:254204..260975 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000552704	0.538166	0.297568	0	0	0.000961188	2.29293	0.00119722	2.64517e-08	6.38756	2.75943	2.46177	4.01798	2.52702	6.7552	8.17788	6.11245	5.08604	6.92029	8.88862	2.91479	1.3954	3.67186	5.04276	8.48857	8.91229	11.6406	12.246	6.14433	2.87365
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015917Pept_C14A
IPR033139Caspase_cys_AS
IPR001309Pept_C14_p20
IPR002138Pept_C14_p10
IPR029030Caspase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0004197cysteine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00003604 vs. Swiss-Prot (Human)
Match: CASP7 (Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.234e-35
Identity = 91/308 (29.55%), Postives = 149/308 (48.38%), Query Frame = 3 
Query:  126 EKVDGRPEKKK-SKSLNTGNKENDNI--LKAVRESTDPDSYPNKLP--GYFLLINNENFLE---MDKRTGTDIDARSITVLFQDMGFTIEEHKDLLSYKMRQVLQEAGERSYAKYSCLIICILSHGKEGEIYAVDETIPVKEITLCFHGS---NLGGKPKIFLLQACQGRAFMNTVQPREILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIITLPSEADFLYAYSTAFGFRSFRGPKSGTWFIQSFCEIVRKQALTMDVIRILTRVNLMIC---SKQS-----KTKRQVVSVVTQLRKEFFL 992
            + VD +P++     SL +  K+N  +  +K  R+      Y       G  ++INN+NF +   M  R GTD DA ++   F+ +GF +  + D    KM+ +L++A E  +   +C    +LSHG+E  IY  D   P+K++T  F G     L  KPK+F +QAC+G    + +Q                                +  +++    +P EADFL+AYST  G+ S+R P  G+WF+Q+ C I+ +    +++++ILTRVN  +      QS       K+Q+  VV+ L KE + 
Sbjct:   20 DSVDAKPDRSSFVPSLFSKKKKNVTMRSIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQ--------------------------ADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYF 301
The following BLAST results are available for this feature:
BLAST of TCONS_00003604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASP75.234e-3529.55Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1[more]
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