TCONS_00003576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003576
Unique NameTCONS_00003576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003576 ID=TCONS_00003576|Name=TCONS_00003576|organism=Clytia hemisphaerica|type=transcript|length=1903bp
GGAAGATCTCTTATCCTTTGTTTAACACAGCATTTAAGTCTTGGCACTTA
TTATTGCAAGACTTTGATAAGCTTTTTTTTACTACGCGCTTATAAAGAGA
GTATAACTATATAATATTTGTAAAAACGTTACAATTACGGAAGAACGACA
TGGACACATTgaagatgattttgattttgacttcaTTAATGACGTCATAC
TCCAATGCCTTCCCAACAGTTATGAGGAAGAACAAACCAAATTTTGCTGG
AATTCCATCACTGGCTGTAGATATAATAGACGAAAGCCTTTGCATAGATG
ACGCTAGTTGTAAGACTGAAGGTTATAAGTGCAACAAAGCATTGCCCACT
TGGCAATGTCAACAACCATGCAATAACAGACGTGACTGTCGTTATGGAAT
GACTTGTGATGTGGAACAAGGTTTTTGTGGTGCTCCGAAAACATTTGACG
ATATTTTGAATAAACAAGGTTGTCCGAAAATTCATAAACAACCATGCGCC
ACTAATACTGATTGTGCATGCGCAGATGCTGAGTATGTCTGTGAGAAGGA
ATTGTTCAGCACGAAGAAAGAGTGCGTCTCCAAGAAACCAATAcatgaac
aaaagaaaaaacaagaggGAGAGACATGTCGTAAAAACTCAGACTGTGAA
GAATTATTTTACGCATGCGTTGATGGTACCTGTCAAGTAGATTTCTCATC
TTTTGGCGAAGATAGCAGCTTTATGGAAAACTTGTTTGGAAAGAATGCAg
tcaagaaagaaaaacagaaaagttgagATTCTTCAATCGTTGGAAAACAC
ATTCGAATGTTAAACGAATTTCTCAGATGACTCATTAAGCATGGTACGAT
TGACATTTATGGATGATCAAGGAGGGACAACAAAAGAAGGACATCAAACC
TTCTTAAACAAAACATtgacgaaaaaaagaaataaaaatcattCATTACT
GGAATCAAATTCCAGATTTGACGACACATGTCTTGACAAATTCGCAAACA
GATTCTAAATGAACTGAAACTCGATAATGAAATTATGACATCAAATTACC
gcaaattcaaggaaaagccaCCCACTGACGTGATGAGTGGTGCTAATTTG
gcgaatcaaatcaaaatttaatgacaTTTATTGAATGCGCAAAACAAAGA
ACAAAACAAATCGATTTCAATTTCATCCATTGTTGTCATGACAACACTGC
AATCAAAATTATGATTGGTAAAGCACTTTTGAATTACGTCACTCATCGAA
GTTGCCCATTTTTGGTGGTGTTAATTAGCTACAGAGTATCATATGTCGAG
AGTTTGGAGTTTGATTTTAGCGAGCTACAGACCAAAAAATAGAACATTAG
TATTTTTATATCATGATAATAAATGCAAGtcgtttaaaggttttattttt
acacaagtgttcccgtttcatatcagccacatatttcatatcaggacagt
gtctgcttaTTGTTCCATTATGCTGAtagaagcaaaaaatgtttttcttt
tcttctttttggccaatcttgctccatattcgtgtcaatccaatatgaaa
aagcttgtgcattaaaattgacgagtaagcaaaagatatcactcttattt
aaaaacaaaacctttaacttgtTCATATTTAATTAATTTACAAGACAATT
ATTGAAACACTGAATATATTTTGATGAATTCAACGATTTACAGATGTGAT
TTAGTGCGAATTACACGACTTATTTTTCTTTCCATATTTTATAGTGTATa
tttattgaaaacaaaattgatgaaaaagggaaatttaTAATAAAAGATAT
AAATATTGTGAGACTGtaaatattatattttaaaaactaaaagatttatt
tattttcaaattataaagttTTAGTAAAAAGATATATATTGTGTACAAAA
AAA
Run BLAST on NCBI

transcript from alignment at sc0000030:825026..828605+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003576 ID=TCONS_00003576|Name=TCONS_00003576|organism=Clytia hemisphaerica|type=transcript|length=3580bp|location=Sequence derived from alignment at sc0000030:825026..828605+ (Clytia hemisphaerica)
GGAAGATCTCTTATCCTTTGTTTAACACAGCATTTAAGTCTTGGCACTTA
TTATTGCAAGACTTTGATAAGCTTTTTTTTACTACGCGCTTATAAAGAGA
GTATAACTATATAATATTTGTAAAGTAAGTGTATTTATTTTTATGCATTC
GAATTTTCAAGGACTTTAAAATTTGAGGATCTGGACTGATTTCGACTGAT
TGATAAAATTTgaccaatatttttttctcgttaTTTTTGTAGAACGTTAC
AATTACGGAAGAACGACATGGACACATTgaagatgattttgattttgact
tcaTTAATGACGTCATACTCCAATGCCTTCCCAACAGTTATGGTGAGTTC
TGATTGGTCGAATACAGTATTATTGAATCTCTTACTCTTCAAATGCGAAT
CTGCTGGTTTCAAACTTGAAAGTGTGGCTGTTTGTTTCCCAGCTGgtaac
aacgttgtttcaacgttcatctaaccttatatggacgttgtgaacattag
actAACGTTGGAACAACGTTGTTTGCCAGGTTGGTTATAGGGGTTGTAGG
GTATCGAAGTAGTTTTGGCTGGGGTATTTTGTATGCTTTAGTCTTTTGAG
TTTAATGGTCGATTCATTATAGcgtaacatttttttaaatttattcttat
aGAGGAAGAACAAACCAAATTTTGCTGGAATTCCATCACTGGCTGTAGAT
ATAATAGTAAGTTGAAAAACAACGAAATTGACATCTGATTAAAAATGTGA
TTATGTATTCATTAAATCTAATGAGTATAACGGCATTCCATTTCAACGAC
TAGCTTCCTTTTGTTTATAAACAGTTATGATTGGAATCTTAAAAAAACAT
ATTCTGTGTCTcgtcattctattggttaaaatcTAGGTGGAAAATATTGA
TTATAAAAAAGATTACAAGAACAGCCTTAACAATTTTCAAAGTTCTTTGC
CCCCCCCTATTGGTTGAATTGTAGGGTCAAAGAAACATTATATGTACGGA
ACAGAGATTCTTTCGGCTAGGCCTTTCGGAATGTTTCGCGCTTAAGAAAA
GATTATACAATTAGCATCTCCaaatattcaaaaatcaaattttttcctaa
attgctacattttcttatttctttagGACGAAAGCCTTTGCATAGATGAC
GCTAGTTGTAAGACTGAAGGTTATAAGTGCAACAAAGCATTGCCCACTTG
GCAATGTCAACAACCATGCAATAACAGACGTGACTGTCGTTATGGAATGA
CTTGTGATGTGGAACAAGGTTTTTGTGGTGCTCCGAAAACATTTGACGAT
ATTTTGAATAAACAAGGTTGTCCGAAAATTCATAAACAACCATGCGCCAC
TAATACTGATTGTGCATGCGCAGATGCTGAGTATGTCTGTGAGAAGGAAT
TGTTCAGCACGAAGAAAGAGTGCGTCTCCAAGAAACCAATAcatgaacaa
aagaaaaaacaagaggGAGAGACATGTCGTAAAAACTCAGACTGTGAAGA
ATTATTTTACGCATGCGTTGATGGTACCTGTCAAGTAGATTTCTCATCTT
TTGGCGAAGATAGCAGCTTTATGGAAAACTTGTTTGGAAAGAATGCAgtc
aagaaagaaaaacagaaaagttgagATTCTTCAATCGTTGGAAAACACAT
TCGAATGTTAAACGTAAGTCATTTATATTCTACACATACATTCAAAAGTG
AAAATTGCATTGCTAAAAATGTCTAGATCCGACTTATAATAAGTTATATT
AGGCTCTATAAGCAAGCAAGCGAGGGATTAAGGAGTATTAAATTGATATC
TGCTGGATTCTCGCCACGAGCCTCATTGAAAAGAGATTAATTGGAAGCTA
AATTTAGGTCAAATTTTAAGGTTAAGCCTAATCCGTGGATCTCTGAAACG
AACGGAGGTACCAACACCAGCCAAAGGTTTCTTCTCGATTTCAAGATATC
ATTTCGTTTGGATCTATAAGGATTTAAGGGAACTATAGGGCAAATATGTG
AGGTATTTTTGAGGTATTTTCAACACAAAAGCTCTCACTACAGGACATCT
GTGTCAATGCAAATCTATATAAAATAAATCTGTGTCTTACGTAGAAAGTA
TAGAGTGCTCTTAGCTTGAAACACAGTTGGGGTACTAAAAAATCTGCAAT
ATGTATAATCTATGTTGCTATCTCAAAAAAAAGGTATTGGGTTTGTTATT
TAATCTttaatatttctttactttttcttaatctttacAGGAATTTCTCA
GATGACTCATTAAGCATGGTACGATTGACATTTATGGATGATCAAGGAGG
GACAACAAAAGAAGGACATCAAACCTTCTTAAACAAAACATtgacgaaaa
aaagaaataaaaatcattCATTACTGGAATCAAATTCCAGgtaaattttc
atttctttattcttaaaattttaataattcTTCCCTAAATCTAATTCATt
aataatacacccctgtctcacagccctggtgacatttcttcccacagtgg
ggatgaaaattggTATCGAAATCTCAATGCgaatagaaaatctattgttc
ttaGGTCCAGTGGTTCTTAAACTCAATATTTGTATTGTTGTGAACCATAA
AAGTTTTGCTTTAATcctaaattttcattattttctcaTTAGATTTGACG
ACACATGTCTTGACAAATTCGCAAACAGATTCTAAATGAACTGAAACTCG
ATAATGAAATTATGACATCAAATTACCgcaaattcaaggaaaagccaCCC
ACTGACGTGATGAGTGGTGCTAATTTGgcgaatcaaatcaaaatttaatg
acaTTTATTGAATGCGCAAAACAAAGAACAAAACAAATCGATTTCAATTT
CATCCATTGTTGTCATGACAACACTGCAATCAAAATTATGATTGGTAAAG
CACTTTTGAATTACGTCACTCATCGAAGTTGCCCATTTTTGGTGGTGTTA
ATTAGCTACAGAGTATCATATGTCGAGAGTTTGGAGTTTGATTTTAGCGA
GCTACAGACCAAAAAATAGAACATTAGTATTTTTATATCATGATAATAAA
TGCAAGtcgtttaaaggttttatttttacacaagtgttcccgtttcatat
cagccacatatttcatatcaggacagtgtctgcttaTTGTTCCATTATGC
TGAtagaagcaaaaaatgtttttcttttcttctttttggccaatcttgct
ccatattcgtgtcaatccaatatgaaaaagcttgtgcattaaaattgacg
agtaagcaaaagatatcactcttatttaaaaacaaaacctttaacttgtT
CATATTTAATTAATTTACAAGACAATTATTGAAACACTGAATATATTTTG
ATGAATTCAACGATTTACAGATGTGATTTAGTGCGAATTACACGACTTAT
TTTTCTTTCCATATTTTATAGTGTATatttattgaaaacaaaattgatga
aaaagggaaatttaTAATAAAAGATATAAATATTGTGAGACTGtaaatat
tatattttaaaaactaaaagatttatttattttcaaattataaagttTTA
GTAAAAAGATATATATTGTGTACAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001995XLOC_001995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003576-exon-sc0000030-1491911889:825026..825149TCONS_00003576-exon-sc0000030-1491911889:825026..825149Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1510915933:825026..825149TCONS_00003576-exon-sc0000030-1510915933:825026..825149Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1575043694:825026..825149TCONS_00003576-exon-sc0000030-1575043694:825026..825149Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1491911889:825268..825367TCONS_00003576-exon-sc0000030-1491911889:825268..825367Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1510915933:825268..825367TCONS_00003576-exon-sc0000030-1510915933:825268..825367Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1575043694:825268..825367TCONS_00003576-exon-sc0000030-1575043694:825268..825367Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1491911889:825678..825731TCONS_00003576-exon-sc0000030-1491911889:825678..825731Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1510915933:825678..825731TCONS_00003576-exon-sc0000030-1510915933:825678..825731Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1575043694:825678..825731TCONS_00003576-exon-sc0000030-1575043694:825678..825731Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1491911889:826152..826688TCONS_00003576-exon-sc0000030-1491911889:826152..826688Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1510915933:826152..826688TCONS_00003576-exon-sc0000030-1510915933:826152..826688Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1575043694:826152..826688TCONS_00003576-exon-sc0000030-1575043694:826152..826688Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1491911889:827266..827415TCONS_00003576-exon-sc0000030-1491911889:827266..827415Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1510915933:827266..827415TCONS_00003576-exon-sc0000030-1510915933:827266..827415Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1575043694:827266..827415TCONS_00003576-exon-sc0000030-1575043694:827266..827415Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1491911889:827668..828605TCONS_00003576-exon-sc0000030-1491911889:827668..828605Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1510915933:827668..828605TCONS_00003576-exon-sc0000030-1510915933:827668..828605Clytia hemisphaericaexon
TCONS_00003576-exon-sc0000030-1575043694:827668..828605TCONS_00003576-exon-sc0000030-1575043694:827668..828605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:825026..828605 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52885	1.12649	0	0.327217	1.17039e-05	3.44866e-06	1.06645e-05	3.64397e-10	0.718433	1.00224	1.12418	2.47894e-10	4.81048	2.44204	4.20496	4.35307	1.37154	4.51145	0	0.416247	0	2.12835e-06	2.30593	2.3118	8.10706e-10	0	6.48907	3.55556	0	0.995178
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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