TCONS_00003570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003570
Unique NameTCONS_00003570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003570 ID=TCONS_00003570|Name=TCONS_00003570|organism=Clytia hemisphaerica|type=transcript|length=506bp
AAGTCGATTGATCACAAAAAATCATGGCTTTCTTTCTCTTACGGGATAGC
TGTCCGAAAACTATTTCAAATCGATGACATCTTTGAATAAACGTACCAGT
CTGCAAGTTGGACCATTTTCATGTTTCCTCCAGCAATGAAGGAGTTAATG
AGGAAACAACGTGTCCTCAGCAAACTGGAATATTACCTACATTTACTAAA
GACAGATCCTTGGTGCAGATATTGCCGTTACATGTCAATCCTTTGGCACA
ATCACTGTTGTAGATACATTCCTCGTTCCGCTGGAAGTGAAGAATTTGGC
TTTAGGCATGACATCTAGAGCGACGCATTTATGGGTTGCTTGCATGCAGC
CATGGTTTTGTGGACACCCATCGCTACCAGAACAACTCTGATGAAAGAAA
AAGCAGATATGGAATATTGCAATCTGAATGTTGTCGGCACATCACTGGCA
TCGGCTGCAAAGTTATATAATGAAATAATCAGTAGAAAGTCAGGTGTATT
TTTCAA
Run BLAST on NCBI

transcript from alignment at sc0000030:768339..772468+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003570 ID=TCONS_00003570|Name=TCONS_00003570|organism=Clytia hemisphaerica|type=transcript|length=4130bp|location=Sequence derived from alignment at sc0000030:768339..772468+ (Clytia hemisphaerica)
AAGTCGATTGATCACAAAAAATCATGGGTAAATATTTGTGATATTCGTGg
agtaatgttttatacggaagcacccaaaaagaCTGGCTGATTGCCACttg
ttttaaatttaaataatCTAACTAGTGGCAAACACCCGGGCTaatttggg
tgcttccgtatatagcaaactctctctctaattcgaacctctattcttcg
aatctttctataattcgaactaaaatatttgtcCCCTTAGCAAGAAATTA
GCATctaactttccatttgcctatggcctagattaggggtagaaaccaat
TAAGTTGTCGGACGGCtgagaagtaagtgtgagtcggTACTTATGTTTGG
CATAATtttatggctaatcctcgaatagtaagttttggggaaaatttgtc
ccgataaatacaatattagtataaataagtgaggatcgcctacaaccata
actgcagggagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTCAGTTGGCGGAGGGCGGCCACCCA
GCCATTCGAATACTGTATGTggcgcttatcaaataaaagttaaaccgcga
tttaacctgtgttaaatccaaataaaatactttctgtaattcgattattt
cattttgaagaaagtTCTTGGTCACGGGTCaagaagatcgaattagagag
agtcaattataaaacattacgtcatgaataaaCATGGATTTCTTTGACTT
ACAGAATACGAATCTGTTAATAAGTGTAGCTGTGATAACGTTTCTGCTTC
TCTACAATGTCCTCTCTTACTGCAGTACTGAGGTATTTGACAGTCTGAAT
GTTTCGTACAAGTCTAAAATGGAAATTGAAAACATGtatgataaaaaata
ttttgcaaaaatattgaaatgtcTTATCTATTCTTCTCATTCAGCTTTCT
TTCTCTTACGGGATAGCTGTCCGAAAACTATTTCAAATCGATGACATCTT
TGAATAAACGTACCAGTCTGCAAGTTGGACCATTTTCATGGTGAgaaaaa
ttaattctttcagtACAGCTAAATTTCCTTCATAATTATGAACGAATCTT
TCGGTTGCCGGTAATTTCGATTGAGAATATTATCGAAAAAATAAGCATGC
TTAACAGATAGATCtcgaaaagagctttccaacgaaccCAAACACATGAC
ATATTTAACTAAAGCCAAAGCTGAGAAAATTGCATTTGAAGATGACGTAT
CGTTGTTTTGAAAGAATCCTTAAATTTCAGTTTCCTCCAGCAATGAAGGA
GTTAATGAGGAAACAACGTGTCCTCAGCAAACTGGAATATTACCTACATT
TACTAAAGACAGATCCTTGGTGCAGATATTGCCGTTACATGTCAATCCTT
TGGCACAATCACTGTTGTAGATACATTCCTCGTTCCGCTGGAAGTGAAGG
TATGGAATGTAAAGTTTAGAGTTTAGATGTATTATGGTTGGAAGAGACAC
TATAGAGCACCACACGAGAATGatcttttccagaaaaatttaaatatggG
GGTTAGAGGATATAatagtttttggaaatttaacCCCCGGACCTTGTGAC
TTTTAAGCCCCGGAAATTAGGTCTAACCCACCagacaagcattagttgac
ccctggacattcaaaattaccctcaaacagagcaagtttaccccccggac
aagtcaaggtaaattttgtaaatttttcactaccccccggacactatatc
ctccatccccatgtaggaacattttctggaagagcccaattcatgatatg
caccattgcaNgacactatatcctccacccccacgtacgaacattttctg
gaagagcccaatagtGTCTTCAATTCAGTATttcagttgacgctctctaa
ttcgacgcaTACACTACttttcgataggctcccttattcgatcaaattga
aagtcgccgtcaacaagaaactcttaaaTTCGACACATACACTACttttc
gataggctcccttattcgatcaaattgaaagtcgccgtcaacaagaaact
cttaaaTTCGACGCATACACTACttttcgataggctcccttattcgatca
aattgaaagtcacgtcaacaagaaactcttaaaTTCGACGCATACACTAC
ttttcgataggctcccttattcgatcaaattgaaagtcgccgtcaacaag
aaactcttaaaTTCGACGCATAGACTACttttcgataggctcccttattc
gatcaaattgaaagtCGCCGTCAACAAAAAACTCTTAAATTCGACGCATA
CACTACttttcgataggctcccttattcgatcaaattgaaagtcgccgtc
aacaagaaactcttaaaTTCGACGCATACActacttttcaaaaagttcca
ttttttgatcaaattgaaagtcgctgtcaacaagaaactctcgaAAACGA
TgctctattgtttttttttcgattgaAAACCAATTCCCCTTGACAAATcg
aagtacatgttttttataagcaagtgtctgtccctatatcaggctcgcat
tgtGCTAAGCATTCTATTATTCTTAAGCAGTAGAACCATTGtataggtac
caaaaactgagcctgcatatgcttataaacgttatgcttataaaaaaaac
atgtagagaGCGTCAACCGTAGATCATAAACTAAAAACATTTGAACTCAT
AAATTTCGCACCACTAATACGCTTCTCTACCGACTGCATTCATGAAATCG
TTTGAAACAGCATAAAATTTTGGAACACTTCAGTAACTCTTTTTAGCAAA
TACGAAATACCGGAACTATGCTAGTTCTAATTGAGAACTGGTGAAGTTAT
TGTTCTTACCTTATAGAATTTGGCTTTAGGCATGACATCTAGAGCGACGC
ATTTATGGGTTGCTTGCATGCAGCCATGGTTTTGTGGACACCCATCGCTA
CCAGAACAACTCTGATGAAAGAAAAAGCAGGTAGAgatatttttgttgaa
attctaCAATTAACTTATGGATAGTTGATCTAACATAATCTAAAAAACCG
GTTACTGCCTCGCTAGCAGAATTACGTTAAAATGGAAAAGACATTGAATT
GAAATTCATGCttcaacaaaattttgagaCAGCAATGTGTAATTTTTTGC
CGTTTGAAAATTCCCCGGGAGCTATTTAGGCAAAAATACGTAATTGGTAT
GTGTGAACAATAAGAGTCGGTTTTTGACCTTCCCAAAAGTCTTTGCAAAT
GttagaaaaagaacaaaaagaccAAAAGACAAAAAGACTAAAGGTCGCAA
TTTTCCCCATTTGGGTTTCTTTAAGTGTCGCTTTTGCGCCAATTTTGTCG
TTCCAAGGAAAGCTTTTCGCACAAATTTAGCCTCTCGAAGGGTTGGTCCG
CGCATACCCGAAATTTTCCAACCCTATTACCCCCAGGGTCGGAAACACTC
TTAACCCTTAACCCAGTTATCTCAATACAACCTGAGACTCCATGGATTTT
TCACCTACATCATAAGCGGCCGTTAATATCATAAGCTCTTCGAAACTCTT
GGCTTCTTTACATTTGTTCTCTTTACATAGATATGGAATATTGCAATCTG
AATGTTGTCGGCACATCACTGGCATCGGCTGCAAAGTTATATAATGAAAT
AATCAGTAGAAAGTCAGGTGTATTTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001993XLOC_001993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003570-exon-sc0000030-1491911889:768339..768365TCONS_00003570-exon-sc0000030-1491911889:768339..768365Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1510915933:768339..768365TCONS_00003570-exon-sc0000030-1510915933:768339..768365Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1575043694:768339..768365TCONS_00003570-exon-sc0000030-1575043694:768339..768365Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1491911889:769733..769828TCONS_00003570-exon-sc0000030-1491911889:769733..769828Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1510915933:769733..769828TCONS_00003570-exon-sc0000030-1510915933:769733..769828Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1575043694:769733..769828TCONS_00003570-exon-sc0000030-1575043694:769733..769828Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1491911889:770069..770237TCONS_00003570-exon-sc0000030-1491911889:770069..770237Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1510915933:770069..770237TCONS_00003570-exon-sc0000030-1510915933:770069..770237Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1575043694:770069..770237TCONS_00003570-exon-sc0000030-1575043694:770069..770237Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1491911889:771655..771768TCONS_00003570-exon-sc0000030-1491911889:771655..771768Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1510915933:771655..771768TCONS_00003570-exon-sc0000030-1510915933:771655..771768Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1575043694:771655..771768TCONS_00003570-exon-sc0000030-1575043694:771655..771768Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1491911889:772369..772468TCONS_00003570-exon-sc0000030-1491911889:772369..772468Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1510915933:772369..772468TCONS_00003570-exon-sc0000030-1510915933:772369..772468Clytia hemisphaericaexon
TCONS_00003570-exon-sc0000030-1575043694:772369..772468TCONS_00003570-exon-sc0000030-1575043694:772369..772468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:768339..772468 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.685242	0	0	0.408252	0.413679	0	0	0.369363	0.382555	0	0	1.31406	1.33419	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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