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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003401 ID=TCONS_00003401|Name=TCONS_00003401|organism=Clytia hemisphaerica|type=transcript|length=1157bp
TTCCAATAAAAATTTCTCTTTGGGATAAGAACACACGGCGTGTGAAGGCT
GAGGGTGCGTGTCCGTATTACGACTATCTaacgcaaaattaaaaaattca
aattggaTTAAAAAAATAGCTATACTTACATCTCTGTGTCCCTTCTGTAG
GTCTACCTTTGTGCTTCGAAAACTGCAAGTAATTGTGATTATTAATACAT
TTATAGGCAATGACTGTTCTGTATTTACtaatgttgtttttcttttattg
ttcagGTAGCCGACGAAACGAAGGCAACGACTAATGTCCATTTTCGTTGG
AGTGTGGTGCAGTCATATAAATCACCTAATTCTCTGGGCCCCAACCTCGT
TGCAGACCCCAACGTGAACAGCATTATAAAAATTAAGACCGTGATGATAG
AGTTAGAAATTGGAAGTTAGAATGGTTCTCGTTCTCTGGTTCCTTAACGA
CGATCGTGTTCAGGCTTTCTTTTCGAGTTTTTTNGGTTCCTTAACGACGA
TCATGTTCAGGCTTTCTTTTCGAGTTCTTTTATTTTCTCCTTCTTTCTTT
TCCTTAGCTTTGGCCTTATTAgccttcttttgttttgttctgCGATTGAA
GTCTACAATGAGGTTTGGGTCTAAAATATTTTCACTAGGCTCCCAAGTAG
CCTGCGACAAGGGATATCCTTGCCACTTCACAAGATAACTCGTGATTCCA
GATCGTTTTCTGGATTTCAGAATTCTTTCCACCCTATAAACCAGGTCTTC
CTGTTCGATTTCCACTGTCGGATCGGGGACGTGCGGCATAGAATCTAAGG
GGATGCAATCCAACGGGACGTCACAAAATTCGTCCTCTCCTTCGACCTCA
TTGTCCGGTCTTTCCCTGGGGTGTACTTCTTTATTCTGGAGGCATGGACA
TTTACTGGGACTCTCCTCCCCTCTATTTCGAGTTTAAAATTGACAGGCGA
AATTTGCTCAACAATACGATATGGTCCATGTCAACGGAATCTCAGTTTAT
TAGAAAGGCCCTTGATAGAGTCCGGCACATGTAGCCATATCAAGTCTCCT
ACAAGAAAAGGCGCGTCCACTGgtgtttttctttcttcgttCGCTTGCTG
GGATCGTTGCATATTTTCTTTCGCGGTCTCTTGGGCCAAACGAAGGGAGG
TTATCAN Run BLAST on NCBI protein sequence of TCONS_00003401-protein >TCONS_00003401-protein ID=TCONS_00003401-protein|Name=TCONS_00003401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MPHVPDPTVEIEQEDLVYRVERILKSRKRSGITSYLVKWQGYPLSQATWE
PSENILDPNLIVDFNRRTKQKKANKAKAKEKKEGENKRTRKESLNMIVVK
EXKKLEKKA Run BLAST on NCBI transcript from alignment at sc0000026:661565..662721 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003401 ID=TCONS_00003401|Name=TCONS_00003401|organism=Clytia hemisphaerica|type=transcript|length=1157bp|location=Sequence derived from alignment at sc0000026:661565..662721 (Clytia hemisphaerica)
NTGATAACCTCCCTTCGTTTGGCCCAAGAGACCGCGAAAGAAAATATGCA
ACGATCCCAGCAAGCGaacgaagaaagaaaaacacCAGTGGACGCGCCTT
TTCTTGTAGGAGACTTGATATGGCTACATGTGCCGGACTCTATCAAGGGC
CTTTCTAATAAACTGAGATTCCGTTGACATGGACCATATCGTATTGTTGA
GCAAATTTCGCCTGTCAATTTTAAACTCGAAATAGAGGGGAGGAGAGTCC
CAGTAAATGTCCATGCCTCCAGAATAAAGAAGTACACCCCAGGGAAAGAC
CGGACAATGAGGTCGAAGGAGAGGACGAATTTTGTGACGTCCCGTTGGAT
TGCATCCCCTTAGATTCTATGCCGCACGTCCCCGATCCGACAGTGGAAAT
CGAACAGGAAGACCTGGTTTATAGGGTGGAAAGAATTCTGAAATCCAGAA
AACGATCTGGAATCACGAGTTATCTTGTGAAGTGGCAAGGATATCCCTTG
TCGCAGGCTACTTGGGAGCCTAGTGAAAATATTTTAGACCCAAACCTCAT
TGTAGACTTCAATCGcagaacaaaacaaaagaaggcTAATAAGGCCAAAG
CTAAGGAAAAGAAAGAAGGAGAAAATAAAAGAACTCGAAAAGAAAGCCTG
AACATGATCGTCGTTAAGGAACCNAAAAAACTCGAAAAGAAAGCCTGAAC
ACGATCGTCGTTAAGGAACCAGAGAACGAGAACCATTCTAACTTCCAATT
TCTAACTCTATCATCACGGTCTTAATTTTTATAATGCTGTTCACGTTGGG
GTCTGCAACGAGGTTGGGGCCCAGAGAATTAGGTGATTTATATGACTGCA
CCACACTCCAACGAAAATGGACATTAGTCGTTGCCTTCGTTTCGTCGGCT
ACctgaacaataaaagaaaaacaacattaGTAAATACAGAACAGTCATTG
CCTATAAATGTATTAATAATCACAATTACTTGCAGTTTTCGAAGCACAAA
GGTAGACCTACAGAAGGGACACAGAGATGTAAGTATAGCTATTTTTTTAA
tccaatttgaattttttaattttgcgttAGATAGTCGTAATACGGACACG
CACCCTCAGCCTTCACACGCCGTGTGTTCTTATCCCAAAGAGAAATTTTT
ATTGGAA Coding sequence (CDS) from alignment at sc0000026:661565..662721 >TCONS_00003401 ID=TCONS_00003401|Name=TCONS_00003401|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000026:661565..662721 (Clytia hemisphaerica)
ATGCCGCACGTCCCCGATCCGACAGTGGAAATCGAACAGGAAGACCTGGT
TTATAGGGTGGAAAGAATTCTGAAATCCAGAAAACGATCTGGAATCACGA
GTTATCTTGTGAAGTGGCAAGGATATCCCTTGTCGCAGGCTACTTGGGAG
CCTAGTGAAAATATTTTAGACCCAAACCTCATTGTAGACTTCAATCGcag
aacaaaacaaaagaaggcTAATAAGGCCAAAGCTAAGGAAAAGAAAGAAG
GAGAAAATAAAAGAACTCGAAAAGAAAGCCTGAACATGATCGTCGTTAAG
GAACCNAAAAAACTCGAAAAGAAAGCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003401-exon-sc0000026-1491911889:661565..662721 | TCONS_00003401-exon-sc0000026-1491911889:661565..662721 | Clytia hemisphaerica | exon |
| TCONS_00003401-exon-sc0000026-1510915933:661565..662721 | TCONS_00003401-exon-sc0000026-1510915933:661565..662721 | Clytia hemisphaerica | exon |
| TCONS_00003401-exon-sc0000026-1575043694:661565..662721 | TCONS_00003401-exon-sc0000026-1575043694:661565..662721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000026 | supercontig | sc0000026:661565..662721 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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