TCONS_00003291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003291
Unique NameTCONS_00003291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003291 ID=TCONS_00003291|Name=TCONS_00003291|organism=Clytia hemisphaerica|type=transcript|length=2144bp
cttgGCCAAACAACGGTGTGAAAAACACTTCAAAACAATGTGGACATACG
CATACTTGGTCATTGGTGCACTTTGGCATGTGACGTCATTGAAGGGTGTC
ATTTCTACAGaatgTAACACCGCACTCGGTATGGAAAGCGGCGCCATCAA
AGATGCCCAAATCACCGCCTCACATTGGCTATACAAAGACCAACCCTCAA
GACACTATGACCCAACTAACGCCCGTCTAAATTCCAAAACGCCCGCGGGC
GCGTGGTGTTCTGATGGAATCGAAGAGAACTTGGACCAATACATACAGAT
TGATCTATTGAAGGATACCAAAGTGACTGGTATTGCAACACAAGGGAGAA
CAAAATATAAAGAATATATCGAAAAATTTCAATTACTTTATCAACGAGAC
GGGGATTCACAATTTAGAATGTATAACGAGTCTGGCACATGGAAGGAATT
CCCAGCCAACAAAGATAATGATAACACGGCGCACAATTACTTTATACGAC
CAGTCATAGCGCGGCGTTTACGCATTTATCCACGTGGCGAGGAGTTTGCT
ATCTATTGCACACGACTTGAAATTTATGGATGCAAATGGAGCCATCAATT
ATcCGCACTTCAATCGTATTCTGGACCTTTCGGCTCTCAAAAGAACGGCG
TCGTCATGGAAGACTCAACGTACGACGGACTCAAAACAAACAACTTCGTT
TCTGACGGACTCGGAAAACTCACAGATGCCGTTTACGGAGAGAAGAATAG
TTTGCTAGGAAGTTCAGGTTCACCCTGGGTTGCCTACAATACTCAAAATC
CTGAAATCACATTCCATTTCTCTGAAAAGAAAGTCATCAAGCAAGTCATG
ATTCACGTTAACAACAACGGAAACGATATCAAAGTATTCCAACATCTCGA
CGTCGCCATAAGCAGTGACGGCAAATCATTCTCAAACGTCAAACGATACA
GTACAGACGACGCTCAACGACAAAAGATCGATGCATACCCGGTAGTTTGT
AATCTAGGCGAAGTAGTCGCCAAACATTTGAGATTAAGATTCACTAAAGA
CGGCGACTGGTTATTGATTAGTGAAGTTGTTTTCATGACGGATACTTATC
CACCAAAGCCAGTCATTCCGGACCGCACCACGGATAATACGGACAGAGGT
GATAAGAATACGGACGACAAAGATGGTGGAAATCAACCTTTTTTCACGTT
TGCACCAGAAATAGTGACTCCAAGAGGAGAGCCAGAGAAAAGCACAAAAG
ATAAAGATTCCAAAGGATTGAGTTTTCCGATTATTTTAACAATCGCTTTG
GTGACCATCGTACTCGCCATCATTGTCGGTGTTATTATCTTCAAATCGta
caacaaaaagaaaaacaaaaaacacgaGCGATGTAACACCTCACAACCTG
CTCACATTCAGAACAATCATAAGcaagataatttatccttaTTAGCGGGT
GGTGATGAACGTTATATGCCAGCTTATCATCCACAGCCGATGAAAACGCC
CCAAAATACCGCCCTTATACCACAGAATGGGATGTATTTTCAACCACCCG
CCATGCACCAGGGCGGATACAACACTAAAATTATGATGAGCTGAGGTGTA
TAAATCTGCTGACAGTAGAAAAGCATGGAGTAGTTTTAGAGAGCTGTTTT
AAGCCATGTCTCTTCAAAGTTAGTCATGGATATCGAGATTACTCAGGAAG
AGACTCTTCATTCCTTTTATGTCATATTTGGAAGACAACTGACGTAGGTA
CTTTGTCCCCTGGACATTGAATACATCGTACATGTGGAAGTTTTCTCATA
GAATGGAGTTTATTGGCTATGGGTCAAACATACAAAATTACTACTTATCC
TGCTTTTAACAATGAACACTGAAGTCCATTCGCTTAAAGTATGCTCTCTT
TcttgttttcatgtggaaaccactctcaagggaatTAGTCTAATTATGCC
TGACCTAGTTTCCACGTGGCAAAACAGTGCACACTAAAATCGAATGGACT
TTAACAGAGCTGTTTAGGTATGGACggcattaaaaaaaaaaaacagaagt
aCATACATTACAACTTGCGAAAAAGACAAATTTTTATCCCTTTTTTGTTT
ATGATTTAGTTTATAATATTGACGCGTTTTCTTAACGTCTTCTC
Run BLAST on NCBI

protein sequence of TCONS_00003291-protein

>TCONS_00003291-protein ID=TCONS_00003291-protein|Name=TCONS_00003291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp
LAKQRCEKHFKTMWTYAYLVIGALWHVTSLKGVISTECNTALGMESGAIK
DAQITASHWLYKDQPSRHYDPTNARLNSKTPAGAWCSDGIEENLDQYIQI
DLLKDTKVTGIATQGRTKYKEYIEKFQLLYQRDGDSQFRMYNESGTWKEF
PANKDNDNTAHNYFIRPVIARRLRIYPRGEEFAIYCTRLEIYGCKWSHQL
SALQSYSGPFGSQKNGVVMEDSTYDGLKTNNFVSDGLGKLTDAVYGEKNS
LLGSSGSPWVAYNTQNPEITFHFSEKKVIKQVMIHVNNNGNDIKVFQHLD
VAISSDGKSFSNVKRYSTDDAQRQKIDAYPVVCNLGEVVAKHLRLRFTKD
GDWLLISEVVFMTDTYPPKPVIPDRTTDNTDRGDKNTDDKDGGNQPFFTF
APEIVTPRGEPEKSTKDKDSKGLSFPIILTIALVTIVLAIIVGVIIFKSY
NKKKNKKHERCNTSQPAHIQNNHKQDNLSLLAGGDERYMPAYHPQPMKTP
QNTALIPQNGMYFQPPAMHQGGYNTKIMMS
Run BLAST on NCBI

transcript from alignment at sc0000026:827448..831554+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003291 ID=TCONS_00003291|Name=TCONS_00003291|organism=Clytia hemisphaerica|type=transcript|length=4107bp|location=Sequence derived from alignment at sc0000026:827448..831554+ (Clytia hemisphaerica)
cttgGCCAAACAACGGTGTGAAAAACACTTCAAAACAATGTGGACATACG
CATACTTGGTCATTGGTGCACTTTGGCATGTGACGTCATTGAAGGGTGTC
ATTTCTACAGGTAGAAAGAAagattcattttatttgtaatttCTTCTTTG
TAATCAATGAAATTCAAACCTTATCATAGCTTGAAACACCCACAATACGC
CCAAAACGGCCATAAAAGTACTTTTTTTTAACCTCCACCAGTGTTTAGTG
ACAATACTAAGTACAGATGGATCCTAATAATTCATACACGAGCACTGCCG
CCCCAATCTCCTGATACCGAACAGAAGtcttttaattcttttaatATTTG
TCTcaaggcagttagtcacactagcgtcctgccgaaatgcgtatcaaaga
ttaatgctgcgaaagcgctatatcattTACTTGNATCAATGAAattcaaa
gattaatgctgcgaaagtgCTATATCATTTACTAAATTTGCAAGCAAAag
atgcgccgcaaaacttctaaagggattcatgaaaaaataacccggcgctt
tttaatgaaattaacatttttaaaaactatgagaaattgcctaaaatttg
agccatagattaaaaaatttgagccaagccaaccttgaaaactaatttga
agatcaacttcccaaagaaaaaaatctacggaggagacggaacccaccta
gatccgcgcaccgccggataggctattttccagaaattttgccggacctc
aaacacagGCCCATTTACATGTGAGGAATTacttttactttagcgtataa
acaaggccttaaaaattgaagcactgcttcgggaattgaatgacaaaatt
tggttggtacATATTCTGGCTGgctgcacgttcgcaatcgGTGATTTTGT
Ctcttttaagttttcaagttttaattaattgtcttgggaacttgaacttg
attcaggtaactctcatccttgttgttgcaaatacatcctgtagatgact
gatgttgttttttctgaaagcttgatttcctagtgtgactaactgcaaGG
GGCTTCAAAAGAGGTATCTATTATTTTATATAGACTGACTAACAAAACCT
CTAAACTAaatggaaattttcaaattttagaatgTAACACCGCACTCGGT
ATGGAAAGCGGCGCCATCAAAGATGCCCAAATCACCGCCTCACATTGGCT
ATACAAAGACCAACCCTCAAGACACTATGACCCAACTAACGCCCGTCTAA
ATTCCAAAACGCCCGCGGGCGCGTGGTGTTCTGATGGAATCGAAGAGAAC
TTGGACCAATACATACAGATTGATCTATTGAAGGATACCAAAGTGACTGG
TATTGCAACACAAGGGAGAACAAAATATAAAGAATATATCGAAAAATTTC
AATTACTTTATCAACGAGACGGGGATTCACAATTTAGAATGTATAACGAG
TCTGGCACATGGAAGGTTAGTTTACACCGGAAAAAAATATAACTCAAAAT
ACAACAAGTACACAGGGTAAAACTAAGATTTCACTACATCAAAAAGTTAC
GGTAATTATTTTCGGCGATTCTCCCTCCAGATTTTggtataaaaatttga
aattgtagTAGAAAGTTGTGTTTAACATAACGAATTCACTATCAACCATT
CTAAGGAATATAGAATTGACCTCTTTTTAAAGTCTTGCGGAACTTTAGAT
TCTAGAGGTTCCTGCGGACTGATTTTTTACTGAAATACCTAGATAGACAG
TTCTCGACTTGCTCATCTTTAcgtagactatgttatagtctaagacgaat
cactatctaagaaaaaagcccaaagccgaagaaaattcgcaaacggtttt
tttttgccgaaaagagttaacagtcggtagagaaactctcccgccgattt
tttccgtataccgccataacgccatagtGCCATtgtttcccgcctttact
atcactgtaacggacgataacatcgtctaatcTTTACGTAGATTCCAAAC
AGTTGATTATAAAATTAAGAAATTACAATTTTTATTTAGGAATTCCCAGC
CAACAAAGATAATGATAACACGGCGCACAATTACTTTATACGACCAGTCA
TAGCGCGGCGTTTACGCATTTATCCACGTGGCGAGGAGTTTGCTATCTAT
TGCACACGACTTGAAATTTATGGATGCAAATGGAGCCATCAATTATGTAA
GTTAAtattaatacacccctgtgtcacagacccggtgagaCACCCGCCCC
AGCCAAATTTCGTTCTCGGTGAGAAAATAATCTGAATGTGATTTCATACC
CAACTGAGattcaattgaaaaaaaatcacataagtttttgttgttgtttt
ttcagcCGCACTTCAATCGTATTCTGGACCTTTCGGCTCTCAAAAGAACG
GCGTCGTCATGGAAGACTCAACGTACGACGGACTCAAAACAAACAACTTC
GTTTCTGACGGACTCGGAAAACTCACAGATGCCGTTTACGGAGAGAAGAA
TAGTTTGCTAGGAAGTTCAGGTTCACCCTGGGTTGCCTACAATACTCAAA
ATCCTGAAATCACATTCCATTTCTCTGAAAAGAAAGTCATCAAGCAAGTC
ATGATTCACGTTAACAACAACGGAAACGATATCAAAGTATTCCAACATCT
CGACGTCGCCATAAGCAGTGACGGCAAATCATTCTCAAACGTCAAACGAT
ACAGTACAGACGACGCTCAACGACAAAAGATCGATGCATACCCGGTAGTT
TGTAATCTAGGCGAAGTAGTCGCCAAACATTTGAGATTAAGATTCACTAA
AGACGGCGACTGGTTATTGATTAGTGAAGTTGTTTTCATGACGGATACTT
ATCCACCAAAGCCAGTCATTCCGGACCGCACCACGGATAATACGGACAGA
GGTGATAAGAATACGGACGACAAAGATGGTGGAAATCAACCTTTTTTCAC
GTTTGCACCAGAAATAGTGACTCCAAGAGGAGAGCCAGAGAAAAGCACAA
AAGATAAAGGTAAAATTTATTGATTTgccatttttgtaaaaaacattGAT
CACTGAGTAGTGGTACAATTAAAGCAccgaatttaaaaaaactccgATTA
TAGGTACCATATTATAAATCTAAAGATAATTCAGGTATCAAAAGAGATCA
GTGCAACTACCTTATCATCTACATAACTTCATGGCTCAATGTACTTTTTC
TCTGTTCAATTTATTTTAGATTCCAAAGGATTGAGTTTTCCGATTATTTT
AACAATCGCTTTGGTGACCATCGTACTCGCCATCATTGTCGGTGTTATTA
TCTTCAAATCGtacaacaaaaagaaaaacaaaaaacacgaGCGATGTAAC
ACCTCACAACCTGCTCACATTCAGAACAATCATAAGcaagataatttatc
cttaTTAGCGGGTGGTGATGAACGTTATATGCCAGCTTATCATCCACAGC
CGATGAAAACGCCCCAAAATACCGCCCTTATACCACAGAATGGGATGTAT
TTTCAACCACCCGCCATGCACCAGGGCGGATACAACACTAAAATTATGAT
GAGCTGAGGTGTATAAATCTGCTGACAGTAGAAAAGCATGGAGTAGTTTT
AGAGAGCTGTTTTAAGCCATGTCTCTTCAAAGTTAGTCATGGATATCGAG
ATTACTCAGGAAGAGACTCTTCATTCCTTTTATGTCATATTTGGAAGACA
ACTGACGTAGGTACTTTGTCCCCTGGACATTGAATACATCGTACATGTGG
AAGTTTTCTCATAGAATGGAGTTTATTGGCTATGGGTCAAACATACAAAA
TTACTACTTATCCTGCTTTTAACAATGAACACTGAAGTCCATTCGCTTAA
AGTATGCTCTCTTTcttgttttcatgtggaaaccactctcaagggaatTA
GTCTAATTATGCCTGACCTAGTTTCCACGTGGCAAAACAGTGCACACTAA
AATCGAATGGACTTTAACAGAGCTGTTTAGGTATGGACggcattaaaaaa
aaaaaacagaagtaCATACATTACAACTTGCGAAAAAGACAAATTTTTAT
CCCTTTTTTGTTTATGATTTAGTTTATAATATTGACGCGTTTTCTTAACG
TCTTCTC

Coding sequence (CDS) from alignment at sc0000026:827448..831554+

>TCONS_00003291 ID=TCONS_00003291|Name=TCONS_00003291|organism=Clytia hemisphaerica|type=CDS|length=7965bp|location=Sequence derived from alignment at sc0000026:827448..831554+ (Clytia hemisphaerica)
ttgGCCAAACAACGGTGTGAAAAACACTTCAAAACAATGTGGACATACGC
ATACTTGGTCATTGGTGCACTTTGGCATGTGACGTCATTGAAGGGTGTCA
TTTCTACAGaatgTAACACCGCACTCGGTATGGAAAGCGGCGCCATCAAA
GATGCCCAAATCACCGCCTCACATTGGCTATACAAAGACCAACCCTCAAG
ACACTATGACCCAACTAACGCCCGTCTAAATTCCAAAACGCCCGCGGGCG
CGTGGTGTTCTGATGGAATCGAAGAGAACTTGGACCAATACATACAGATT
GATCTATTGAAGGATACCAAAGTGACTGGTATTGCAACACAAGGGAGAAC
AAAATATAAAGAATATATCGAAAAATTTCAATTACTTTATCAACGAGACG
GGGATTCACAATTTAGAATGTATAACGAGTCTGGCACATGGAAGGAATTC
CCAGCCAACAAAGATAATGATAACACGGCGCACAATTACTTTATACGACC
AGTCATAGCGCGGCGTTTACGCATTTATCCACGTGGCGAGGAGTTTGCTA
TCTATTGCACACGACTTGAAATTTATGGATGCAAATGGAGCCATCAATTA
TcCGCACTTCAATCGTATTCTGGACCTTTCGGCTCTCAAAAGAACGGCGT
CGTCATGGAAGACTCAACGTACGACGGACTCAAAACAAACAACTTCGTTT
CTGACGGACTCGGAAAACTCACAGATGCCGTTTACGGAGAGAAGAATAGT
TTGCTAGGAAGTTCAGGTTCACCCTGGGTTGCCTACAATACTCAAAATCC
TGAAATCACATTCCATTTCTCTGAAAAGAAAGTCATCAAGCAAGTCATGA
TTCACGTTAACAACAACGGAAACGATATCAAAGTATTCCAACATCTCGAC
GTCGCCATAAGCAGTGACGGCAAATCATTCTCAAACGTCAAACGATACAG
TACAGACGACGCTCAACGACAAAAGATCGATGCATACCCGGTAGTTTGTA
ATCTAGGCGAAGTAGTCGCCAAACATTTGAGATTAAGATTCACTAAAGAC
GGCGACTGGTTATTGATTAGTGAAGTTGTTTTCATGACGGATACTTATCC
ACCAAAGCCAGTCATTCCGGACCGCACCACGGATAATACGGACAGAGGTG
ATAAGAATACGGACGACAAAGATGGTGGAAATCAACCTTTTTTCACGTTT
GCACCAGAAATAGTGACTCCAAGAGGAGAGCCAGAGAAAAGCACAAAAGA
TAAAGATTCCAAAGGATTGAGTTTTCCGATTATTTTAACAATCGCTTTGG
TGACCATCGTACTCGCCATCATTGTCGGTGTTATTATCTTCAAATCGtac
aacaaaaagaaaaacaaaaaacacgaGCGATGTAACACCTCACAACCTGC
TCACATTCAGAACAATCATAAGcaagataatttatccttaTTAGCGGGTG
GTGATGAACGTTATATGCCAGCTTATCATCCACAGCCGATGAAAACGCCC
CAAAATACCGCCCTTATACCACAGAATGGGATGTATTTTCAACCACCCGC
CATGCACCAGGGCGGATACAACACTAAAATTATGATGAGCTGAttgGCCA
AACAACGGTGTGAAAAACACTTCAAAACAATGTGGACATACGCATACTTG
GTCATTGGTGCACTTTGGCATGTGACGTCATTGAAGGGTGTCATTTCTAC
AGaatgTAACACCGCACTCGGTATGGAAAGCGGCGCCATCAAAGATGCCC
AAATCACCGCCTCACATTGGCTATACAAAGACCAACCCTCAAGACACTAT
GACCCAACTAACGCCCGTCTAAATTCCAAAACGCCCGCGGGCGCGTGGTG
TTCTGATGGAATCGAAGAGAACTTGGACCAATACATACAGATTGATCTAT
TGAAGGATACCAAAGTGACTGGTATTGCAACACAAGGGAGAACAAAATAT
AAAGAATATATCGAAAAATTTCAATTACTTTATCAACGAGACGGGGATTC
ACAATTTAGAATGTATAACGAGTCTGGCACATGGAAGGAATTCCCAGCCA
ACAAAGATAATGATAACACGGCGCACAATTACTTTATACGACCAGTCATA
GCGCGGCGTTTACGCATTTATCCACGTGGCGAGGAGTTTGCTATCTATTG
CACACGACTTGAAATTTATGGATGCAAATGGAGCCATCAATTATcCGCAC
TTCAATCGTATTCTGGACCTTTCGGCTCTCAAAAGAACGGCGTCGTCATG
GAAGACTCAACGTACGACGGACTCAAAACAAACAACTTCGTTTCTGACGG
ACTCGGAAAACTCACAGATGCCGTTTACGGAGAGAAGAATAGTTTGCTAG
GAAGTTCAGGTTCACCCTGGGTTGCCTACAATACTCAAAATCCTGAAATC
ACATTCCATTTCTCTGAAAAGAAAGTCATCAAGCAAGTCATGATTCACGT
TAACAACAACGGAAACGATATCAAAGTATTCCAACATCTCGACGTCGCCA
TAAGCAGTGACGGCAAATCATTCTCAAACGTCAAACGATACAGTACAGAC
GACGCTCAACGACAAAAGATCGATGCATACCCGGTAGTTTGTAATCTAGG
CGAAGTAGTCGCCAAACATTTGAGATTAAGATTCACTAAAGACGGCGACT
GGTTATTGATTAGTGAAGTTGTTTTCATGACGGATACTTATCCACCAAAG
CCAGTCATTCCGGACCGCACCACGGATAATACGGACAGAGGTGATAAGAA
TACGGACGACAAAGATGGTGGAAATCAACCTTTTTTCACGTTTGCACCAG
AAATAGTGACTCCAAGAGGAGAGCCAGAGAAAAGCACAAAAGATAAAGAT
TCCAAAGGATTGAGTTTTCCGATTATTTTAACAATCGCTTTGGTGACCAT
CGTACTCGCCATCATTGTCGGTGTTATTATCTTCAAATCGtacaacaaaa
agaaaaacaaaaaacacgaGCGATGTAACACCTCACAACCTGCTCACATT
CAGAACAATCATAAGcaagataatttatccttaTTAGCGGGTGGTGATGA
ACGTTATATGCCAGCTTATCATCCACAGCCGATGAAAACGCCCCAAAATA
CCGCCCTTATACCACAGAATGGGATGTATTTTCAACCACCCGCCATGCAC
CAGGGCGGATACAACACTAAAATTATGATGAGCTGAttgGCCAAACAACG
GTGTGAAAAACACTTCAAAACAATGTGGACATACGCATACTTGGTCATTG
GTGCACTTTGGCATGTGACGTCATTGAAGGGTGTCATTTCTACAGaatgT
AACACCGCACTCGGTATGGAAAGCGGCGCCATCAAAGATGCCCAAATCAC
CGCCTCACATTGGCTATACAAAGACCAACCCTCAAGACACTATGACCCAA
CTAACGCCCGTCTAAATTCCAAAACGCCCGCGGGCGCGTGGTGTTCTGAT
GGAATCGAAGAGAACTTGGACCAATACATACAGATTGATCTATTGAAGGA
TACCAAAGTGACTGGTATTGCAACACAAGGGAGAACAAAATATAAAGAAT
ATATCGAAAAATTTCAATTACTTTATCAACGAGACGGGGATTCACAATTT
AGAATGTATAACGAGTCTGGCACATGGAAGGAATTCCCAGCCAACAAAGA
TAATGATAACACGGCGCACAATTACTTTATACGACCAGTCATAGCGCGGC
GTTTACGCATTTATCCACGTGGCGAGGAGTTTGCTATCTATTGCACACGA
CTTGAAATTTATGGATGCAAATGGAGCCATCAATTATcCGCACTTCAATC
GTATTCTGGACCTTTCGGCTCTCAAAAGAACGGCGTCGTCATGGAAGACT
CAACGTACGACGGACTCAAAACAAACAACTTCGTTTCTGACGGACTCGGA
AAACTCACAGATGCCGTTTACGGAGAGAAGAATAGTTTGCTAGGAAGTTC
AGGTTCACCCTGGGTTGCCTACAATACTCAAAATCCTGAAATCACATTCC
ATTTCTCTGAAAAGAAAGTCATCAAGCAAGTCATGATTCACGTTAACAAC
AACGGAAACGATATCAAAGTATTCCAACATCTCGACGTCGCCATAAGCAG
TGACGGCAAATCATTCTCAAACGTCAAACGATACAGTACAGACGACGCTC
AACGACAAAAGATCGATGCATACCCGGTAGTTTGTAATCTAGGCGAAGTA
GTCGCCAAACATTTGAGATTAAGATTCACTAAAGACGGCGACTGGTTATT
GATTAGTGAAGTTGTTTTCATGACGGATACTTATCCACCAAAGCCAGTCA
TTCCGGACCGCACCACGGATAATACGGACAGAGGTGATAAGAATACGGAC
GACAAAGATGGTGGAAATCAACCTTTTTTCACGTTTGCACCAGAAATAGT
GACTCCAAGAGGAGAGCCAGAGAAAAGCACAAAAGATAAAGATTCCAAAG
GATTGAGTTTTCCGATTATTTTAACAATCGCTTTGGTGACCATCGTACTC
GCCATCATTGTCGGTGTTATTATCTTCAAATCGtacaacaaaaagaaaaa
caaaaaacacgaGCGATGTAACACCTCACAACCTGCTCACATTCAGAACA
ATCATAAGcaagataatttatccttaTTAGCGGGTGGTGATGAACGTTAT
ATGCCAGCTTATCATCCACAGCCGATGAAAACGCCCCAAAATACCGCCCT
TATACCACAGAATGGGATGTATTTTCAACCACCCGCCATGCACCAGGGCG
GATACAACACTAAAATTATGATGAGCTGAttgGCCAAACAACGGTGTGAA
AAACACTTCAAAACAATGTGGACATACGCATACTTGGTCATTGGTGCACT
TTGGCATGTGACGTCATTGAAGGGTGTCATTTCTACAGaatgTAACACCG
CACTCGGTATGGAAAGCGGCGCCATCAAAGATGCCCAAATCACCGCCTCA
CATTGGCTATACAAAGACCAACCCTCAAGACACTATGACCCAACTAACGC
CCGTCTAAATTCCAAAACGCCCGCGGGCGCGTGGTGTTCTGATGGAATCG
AAGAGAACTTGGACCAATACATACAGATTGATCTATTGAAGGATACCAAA
GTGACTGGTATTGCAACACAAGGGAGAACAAAATATAAAGAATATATCGA
AAAATTTCAATTACTTTATCAACGAGACGGGGATTCACAATTTAGAATGT
ATAACGAGTCTGGCACATGGAAGGAATTCCCAGCCAACAAAGATAATGAT
AACACGGCGCACAATTACTTTATACGACCAGTCATAGCGCGGCGTTTACG
CATTTATCCACGTGGCGAGGAGTTTGCTATCTATTGCACACGACTTGAAA
TTTATGGATGCAAATGGAGCCATCAATTATcCGCACTTCAATCGTATTCT
GGACCTTTCGGCTCTCAAAAGAACGGCGTCGTCATGGAAGACTCAACGTA
CGACGGACTCAAAACAAACAACTTCGTTTCTGACGGACTCGGAAAACTCA
CAGATGCCGTTTACGGAGAGAAGAATAGTTTGCTAGGAAGTTCAGGTTCA
CCCTGGGTTGCCTACAATACTCAAAATCCTGAAATCACATTCCATTTCTC
TGAAAAGAAAGTCATCAAGCAAGTCATGATTCACGTTAACAACAACGGAA
ACGATATCAAAGTATTCCAACATCTCGACGTCGCCATAAGCAGTGACGGC
AAATCATTCTCAAACGTCAAACGATACAGTACAGACGACGCTCAACGACA
AAAGATCGATGCATACCCGGTAGTTTGTAATCTAGGCGAAGTAGTCGCCA
AACATTTGAGATTAAGATTCACTAAAGACGGCGACTGGTTATTGATTAGT
GAAGTTGTTTTCATGACGGATACTTATCCACCAAAGCCAGTCATTCCGGA
CCGCACCACGGATAATACGGACAGAGGTGATAAGAATACGGACGACAAAG
ATGGTGGAAATCAACCTTTTTTCACGTTTGCACCAGAAATAGTGACTCCA
AGAGGAGAGCCAGAGAAAAGCACAAAAGATAAAGATTCCAAAGGATTGAG
TTTTCCGATTATTTTAACAATCGCTTTGGTGACCATCGTACTCGCCATCA
TTGTCGGTGTTATTATCTTCAAATCGtacaacaaaaagaaaaacaaaaaa
cacgaGCGATGTAACACCTCACAACCTGCTCACATTCAGAACAATCATAA
GcaagataatttatccttaTTAGCGGGTGGTGATGAACGTTATATGCCAG
CTTATCATCCACAGCCGATGAAAACGCCCCAAAATACCGCCCTTATACCA
CAGAATGGGATGTATTTTCAACCACCCGCCATGCACCAGGGCGGATACAA
CACTAAAATTATGATGAGCTGAttgGCCAAACAACGGTGTGAAAAACACT
TCAAAACAATGTGGACATACGCATACTTGGTCATTGGTGCACTTTGGCAT
GTGACGTCATTGAAGGGTGTCATTTCTACAGaatgTAACACCGCACTCGG
TATGGAAAGCGGCGCCATCAAAGATGCCCAAATCACCGCCTCACATTGGC
TATACAAAGACCAACCCTCAAGACACTATGACCCAACTAACGCCCGTCTA
AATTCCAAAACGCCCGCGGGCGCGTGGTGTTCTGATGGAATCGAAGAGAA
CTTGGACCAATACATACAGATTGATCTATTGAAGGATACCAAAGTGACTG
GTATTGCAACACAAGGGAGAACAAAATATAAAGAATATATCGAAAAATTT
CAATTACTTTATCAACGAGACGGGGATTCACAATTTAGAATGTATAACGA
GTCTGGCACATGGAAGGAATTCCCAGCCAACAAAGATAATGATAACACGG
CGCACAATTACTTTATACGACCAGTCATAGCGCGGCGTTTACGCATTTAT
CCACGTGGCGAGGAGTTTGCTATCTATTGCACACGACTTGAAATTTATGG
ATGCAAATGGAGCCATCAATTATcCGCACTTCAATCGTATTCTGGACCTT
TCGGCTCTCAAAAGAACGGCGTCGTCATGGAAGACTCAACGTACGACGGA
CTCAAAACAAACAACTTCGTTTCTGACGGACTCGGAAAACTCACAGATGC
CGTTTACGGAGAGAAGAATAGTTTGCTAGGAAGTTCAGGTTCACCCTGGG
TTGCCTACAATACTCAAAATCCTGAAATCACATTCCATTTCTCTGAAAAG
AAAGTCATCAAGCAAGTCATGATTCACGTTAACAACAACGGAAACGATAT
CAAAGTATTCCAACATCTCGACGTCGCCATAAGCAGTGACGGCAAATCAT
TCTCAAACGTCAAACGATACAGTACAGACGACGCTCAACGACAAAAGATC
GATGCATACCCGGTAGTTTGTAATCTAGGCGAAGTAGTCGCCAAACATTT
GAGATTAAGATTCACTAAAGACGGCGACTGGTTATTGATTAGTGAAGTTG
TTTTCATGACGGATACTTATCCACCAAAGCCAGTCATTCCGGACCGCACC
ACGGATAATACGGACAGAGGTGATAAGAATACGGACGACAAAGATGGTGG
AAATCAACCTTTTTTCACGTTTGCACCAGAAATAGTGACTCCAAGAGGAG
AGCCAGAGAAAAGCACAAAAGATAAAGATTCCAAAGGATTGAGTTTTCCG
ATTATTTTAACAATCGCTTTGGTGACCATCGTACTCGCCATCATTGTCGG
TGTTATTATCTTCAAATCGtacaacaaaaagaaaaacaaaaaacacgaGC
GATGTAACACCTCACAACCTGCTCACATTCAGAACAATCATAAGcaagat
aatttatccttaTTAGCGGGTGGTGATGAACGTTATATGCCAGCTTATCA
TCCACAGCCGATGAAAACGCCCCAAAATACCGCCCTTATACCACAGAATG
GGATGTATTTTCAACCACCCGCCATGCACCAGGGCGGATACAACACTAAA
ATTATGATGAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001829XLOC_001829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003291-exon-sc0000026-1491911889:827448..827557TCONS_00003291-exon-sc0000026-1491911889:827448..827557Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1510915933:827448..827557TCONS_00003291-exon-sc0000026-1510915933:827448..827557Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1575043694:827448..827557TCONS_00003291-exon-sc0000026-1575043694:827448..827557Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1491911889:828578..828912TCONS_00003291-exon-sc0000026-1491911889:828578..828912Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1510915933:828578..828912TCONS_00003291-exon-sc0000026-1510915933:828578..828912Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1575043694:828578..828912TCONS_00003291-exon-sc0000026-1575043694:828578..828912Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1491911889:829487..829643TCONS_00003291-exon-sc0000026-1491911889:829487..829643Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1510915933:829487..829643TCONS_00003291-exon-sc0000026-1510915933:829487..829643Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1575043694:829487..829643TCONS_00003291-exon-sc0000026-1575043694:829487..829643Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1491911889:829803..830456TCONS_00003291-exon-sc0000026-1491911889:829803..830456Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1510915933:829803..830456TCONS_00003291-exon-sc0000026-1510915933:829803..830456Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1575043694:829803..830456TCONS_00003291-exon-sc0000026-1575043694:829803..830456Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1491911889:830667..831554TCONS_00003291-exon-sc0000026-1491911889:830667..831554Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1510915933:830667..831554TCONS_00003291-exon-sc0000026-1510915933:830667..831554Clytia hemisphaericaexon
TCONS_00003291-exon-sc0000026-1575043694:830667..831554TCONS_00003291-exon-sc0000026-1575043694:830667..831554Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003291-proteinTCONS_00003291-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:827448..831554 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129251	0.362373	0.233774	0.36558	6.05659	5.35351	8.50957	9.75407	6.60623	7.24155	5.31261	5.74635	17.9554	20.777	8.32081	8.89366	49.412	47.2782	26.1414	31.9593	38.6313	36.4072	19.713	25.6026	43.5953	46.6592	13.4452	8.1297	0.325602	0.353405
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000421FA58C
IPR008979Galactose-bd-like
Blast
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BLAST of TCONS_00003291 vs. Swiss-Prot (Human)
Match: DDR1 (Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens GN=DDR1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.756e-25
Identity = 100/354 (28.25%), Postives = 151/354 (42.66%), Query Frame = 2 
Query:  107 TECNTALGMESGAIKDAQITASHWLYKDQPSRHYDPTNARLNSKTPAGAWCSDG-IEENLDQYIQIDLLKDTKVTGIATQGRTKY---KEYIEKFQLLYQRDGDSQFRMYNESGTWKEFPANKDNDNTAHNYFIRPVIARRLRIYPRGEEFAIYCTRLEIYGCKWSHQLSALQSYSGPFGSQ---KNGVVMEDSTYDGLKTNNFVSDGLGKLTDAVYGEKNSLLGSSGSPWVAYN----------TQNPEITFHFSEKKVIKQVMIHVNNN-------GNDIKVFQHLDVAISSDGKSFSNVKRYSTDDAQRQKIDAYPVVCNLGEVVAKHLRLRFTKDGDWLLISEVVFMTDT 1096
             +C  ALGM+   I D+ I+AS        +RH     +RL S    GAWC  G +    ++Y+Q+DL +   V  + TQGR      KE+   ++L Y RDG       +  G  +    N+D +         P++AR +R YPR +     C R+E+YGC W      L SY+ P G        V + DSTYDG         GLG+L D V G  +         W  Y+          +   E+ F F   +  + + +H NN           ++       A++ +G+   +    +  D +     A  V   LG  VA+ L+ RF   G WLL SE+ F++D 
Sbjct:   29 AKCRYALGMQDRTIPDSDISASSSWSDSTAARH-----SRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGRRWMGWKDRWGQ-EVISGNEDPEGVVLKDLGPPMVARLVRFYPRADRVMSVCLRVELYGCLWR---DGLLSYTAPVGQTMYLSEAVYLNDSTYDGHTVGGLQYGGLGQLADGVVGLDDFRKSQELRVWPGYDYVGWSNHSFSSGYVEMEFEFDRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPR-----ARAVSVPLGGRVARFLQCRFLFAGPWLLFSEISFISDV 368
The following BLAST results are available for this feature:
BLAST of TCONS_00003291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDR15.756e-2528.25Epithelial discoidin domain-containing receptor 1 ... [more]
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