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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003018 ID=TCONS_00003018|Name=TCONS_00003018|organism=Clytia hemisphaerica|type=transcript|length=1214bp AAATGGGTTGATTACGTTAAATCAAGATCTTGCTGCTGAAGATGTTTGGA AGATCAACCAGTACAGTGTAATAACCGGTTTCGTTGATCCAGGATGGAAG GACTTCAGAAAAAATgaCGGATTAAATTTTCGTGAGATCGATAATTTTGG TTCCACGTTTGACCTTTTGACTCTCCGAATGTTGAACGAAGCAGTATCCA AATATCTTGGTGAAGATGAACCATTTCATGGGACAGGTGGTCTGGTCATT ACTTTCAACAGTATAAACAAAATGGTATACCAAGTGGCGATCGTCTCCAA CTATACACAAACCTTTGTTGTGATGAATTTGCTGGAGCTAGGTCCGTACG GTTTCCACGGAGTATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTC ATTTCTCAATATGCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGG TGTCTCTGGACAATATGTGTATCCCCTGACAGACAGGTTGTGTATAGACC CATCTACGatcacaacaacaacaacaacaacaacaacaaccacgaCCACG ACCACGACCTTCAACACCTCTACTCATACTAATAAACCATCTTTAACTTC AACACTATCGCTTCACAACAATACTGTCCCACCTCAAACAACAGAGGACA AAGAAGAagataatcaccatggtaatgaTTCACTCGCAACAACACAAACG CCATTGCTGTATTCAACATTATCACCAACCACATCGGGCACCACTTCAAC CACGCCCTTCAAACGCCCTGGAAATGATGGTAATGGTGGTGAAAATCGAG TCAAAAGTAAACGAGAAAGTCAAGTATCATCTGAAACAACGTCGATCATT GGTTGGTCTGTTGGAGCTTTTTCTTTACTCATTTTCTGTATTATTGTGTA CGTCGTTTTGAAAAGAAGACCACGTGATCAGTTCGAACAAGCCTGATTGG TCAATGGATTCCACGTGATCATTTCGAACAAGCCTGATTGGTCAATGGAT TCCACGTGATCAGTTCGAACAAGCCTGATTGGTCAATGGATTCCACGTGA TCAGTTCGAACAAGCTTGATTGGTCAATGGATTCCACGTGATCAGTTCGA ACAAGCTTGATTGGTCAATGGATTCTAAGATTCCACTACTacttttcttg gattttttcgctttttaccCCAGTATAGCCGGCCGGCCGGCCGGAGATTG GAAAGGGTCTTTAT Run BLAST on NCBI protein sequence of TCONS_00003018-protein >TCONS_00003018-protein ID=TCONS_00003018-protein|Name=TCONS_00003018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
NGLITLNQDLAAEDVWKINQYSVITGFVDPGWKDFRKNDGLNFREIDNFG STFDLLTLRMLNEAVSKYLGEDEPFHGTGGLVITFNSINKMVYQVAIVSN YTQTFVVMNLLELGPYGFHGVSNPHCPYPMVNFISQYADVVALKDGSNNG VSGQYVYPLTDRLCIDPSTITTTTTTTTTTTTTTTTFNTSTHTNKPSLTS TLSLHNNTVPPQTTEDKEEDNHHGNDSLATTQTPLLYSTLSPTTSGTTST TPFKRPGNDGNGGENRVKSKRESQVSSETTSIIGWSVGAFSLLIFCIIVY VVLKRRPRDQFEQA Run BLAST on NCBI transcript from alignment at sc0000024:817498..820888- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003018 ID=TCONS_00003018|Name=TCONS_00003018|organism=Clytia hemisphaerica|type=transcript|length=3391bp|location=Sequence derived from alignment at sc0000024:817498..820888- (Clytia hemisphaerica) AAATGGGTTGATTACGTTAAATCAAGATCTTGCTGCTGAAGATGTTTGGA
AGATCAACCAGTACAGTGTAATAACCGGTTTCGTTGATCCAGGATGGAAG
GACTTCAGAAAAAATGTAAGAAGTAAATTTATGTCTTGAAGCTAACCTTT
CCCTTGCCTGTACCAGACGACCACGGCTTTTTCCCATAGATTTATAAGCC
GAAAGGGCTAGATGTCGGGCTTTAAAAATCCGCGAAGCTTCTGATTGGTC
AAGCGCTGAAATTCTATTGTAATGTCACGTGACTTAGGTAGGATTTCCTA
ACTAACCACGACACACATTCCAGCAAATGCTTGACATCTAGCCCTTCGGG
CTTTATAAATCTATGCTTTTTCCTCGACACCGTTCCGTATGTTTCATTTA
TCCCCTAGAGATCCTTTGGGGAATAAAAATACTCGGCTTCAAGCCAATGG
ACCGTAGCAAAAACTCTACCAATAAAATTTGTCACCGCGAATACTATTTT
AACCTTTCAAGTGAAATAACCTGTTAGTGAGCTAAGGGACTGGGTTCGAG
CTTAGTTGTTTGTTACTATTTGTTTTTTTAAGGACGGATTAAATTTTCGT
GAGATCGATAATTTTGGTTCCACGTTTGACCTTTTGACTCTCCGAATGTT
GAACGAAGCAGTATCCAAATATCTTGGTGAAGATGAACCATTTCATGGGA
CAGGTGGTCTGGTCATTACTTTCAACAGTATAAACAAAATGGTATACCAA
GTGGCGATCGTCTCCAACTATACACAAACCTTTGTTGTGATGAATTTGCT
GGAGCTAGGTAAAGGACAAAAGTTTGTGCTTTACACGGAGCTGTCTCCAA
CTATACACAAAGCTAACCAACGGGAAACCGTTATCAGGGTGCAATTAGTC
CTGATTACCAATAAAATCCATTTCGACTGTGAAGTAGCCTATGCTAAAAA
AAGCTACGCTCTACGACAGAGACATCCAGAGATTTGCGTAAAAATATCTT
GCAGACACCGAATGATGCCTAACCGTAACAAACAAACTTTGCGCTATATT
TTCAGTCAGCGAAGAAGAGTTTGGTATATGCTAACTGTAGCTTATTTCTC
TACCTTTTACACTGATACTTTTACCTCAGGTCCGTACGGTTTCCACGGAG
TATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTCATTTCTCAATAT
GCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGGTGTCTCTGGACA
ATATGTGTATCCCCTGACAGACAGGTTGTGTATAGGTATGTCAAGTTCTC
ATATCTCAATTAGTACAAAGTGTCGCTTCAACATTAATCTTTATATTTCC
CGTTTGTGAAATTTAAACTAACGTTAGAATAATGTCATGTGTGTCCTTTG
GTCGCTCTTTTACTTTTTTTTCTGGACGTGGCATCATCATACATTCAATT
CATGGCGAATTTTTCTTTTTTTTAGATTGTGTATTAGTCAAAAATTAATC
TGTTGCATAACCAAAGCTTAAGGTCTTGTTTTGAATATTATCCCTCAGTA
TACCAGCAGATTATTTATCATAAAGCTTCAAGACATTTCATATATATTAT
ACAGAACTTTCATATATCATTATTGTTGTTATTATTAGCTTATTATAAAC
ACTATTTCATTAAGACCCATCTACGATCACAACAACAACAACAACAACAA
CAACAACCACGACCACGACCACGACCTTCAACACCTCTACTCATACTAAT
AAACCATCTTTAACTTCAACACTATCGCTTCACAACAATACTGTCCCACC
TCAAACAACAGAGGACAAAGAAGAAGATAATCACCATGGTAATGATTCAC
TCGCAACAACACAAACGCCATTGCTGTATTCAACATTATCACCAACCACA
TCGGGCACCACTTCAACCACGCCCTTCAAACGCCCTGGAAATGATGGTAA
TGGTGGTGAAAATCGAGTCAAAAGTAAACGAGGTGAGCACACCACGTTGT
TTCAACGTTTATTCAATGCAATATTCACAACGTCCATATAACGTTAAGTG
AAACGTTGAAATATCGTTGTGTTCAACTTGGGTGACAATACAATTGCTTT
GTTACTTCAATCTTATCAGCACACTTTTAGAAGTAGGATAGCAGACTTTG
TGGTCTTTACATTGTTCATAAAAGGTACACAATTTCCACATAACTTTAGA
TGGACGTTTATACAATGTAGCCAGATGGAAGATATGATATTTCTTTGTAC
AATAGATAGGCACTGTGTGTTCACAGAACTCCCTTTCAAGTATGTTTGAC
TGTTAAGTCAGCTAGTTGTTTTAGCTTCACTAAATTTACGAAGTGACGGT
GACACCAGACATTTTTAGAACCTGAATGGTCAATGAAATGGTCAATTTTC
ACTCGCTGCTCTAGAGCAGCGTTGAAAAAAAGTGGCATTAGGTTCCCTCT
TTTTTCTTTCCCGGCACCATTATCAGCTACTCAATGAAAATATATTTTTA
GTCCATCCAGTTTCATTTGAATAATGTTTTTCAATGCATTTTATTTTCGT
TGATTTCGATAGTGAAAAAAATGGTTTGTTCTTAAACCATTAACTTTCAC
TAGCATCGTGTTACTTTCTTCGGTCCTGTACTAATACAGGCGCAGTAGTG
TAGTGGCCATCGTTCTTGACATCCGTGCTGGAGGTCAGGGCATGATTCCT
ACTGGAAAATTTAGCAAATATTTCGTCTCTGGTGGAAACATACCCTTGAA
TTTCAGCCCAACTGAGAAATCAACTTTCATTTTATCCCCACTCGAAATCC
AATATTCGAAAATTGTGCTCCGAAACCATTCCCACTGGATTCTTTAACCT
TAATCCCTATAGGGATTTCAATAGGAATTTTTATCCCCATTTGAGGAAAA
AGTTCCACCGGGTCTGTGAGGTAGGGATGTGAGACTGGGCATACTTCAGG
ACAAAGTTTTTTACATTCTCTTTTCTTAACTTTCGATTTTAGAAAGTCAA
GTATCATCTGAAACAACGTCGATCATTGGTTGGTCTGTTGGAGCTTTTTC
TTTACTCATTTTCTGTATTATTGTGTACGTCGTTTTGAAAAGAAGACCAC
GTGATCAGTTCGAACAAGCCTGATTGGTCAATGGATTCCACGTGATCATT
TCGAACAAGCCTGATTGGTCAATGGATTCCACGTGATCAGTTCGAACAAG
CCTGATTGGTCAATGGATTCCACGTGATCAGTTCGAACAAGCTTGATTGG
TCAATGGATTCCACGTGATCAGTTCGAACAAGCTTGATTGGTCAATGGAT
TCTAAGATTCCACTACTACTTTTCTTGGATTTTTTCGCTTTTTACCCCAG
TATAGCCGGCCGGCCGGCCGGAGATTGGAAAGGGTCTTTAT Coding sequence (CDS) from alignment at sc0000024:817498..820888- >TCONS_00003018 ID=TCONS_00003018|Name=TCONS_00003018|organism=Clytia hemisphaerica|type=CDS|length=4725bp|location=Sequence derived from alignment at sc0000024:817498..820888- (Clytia hemisphaerica) AAAGTCAAGTATCATCTGAAACAACGTCGATCATTGGTTGGTCTGTTGGA GCTTTTTCTTTACTCATTTTCTGTATTATTGTGTACGTCGTTTTGAAAAG AAGACCACGTGATCAGTTCGAACAAGCCTGAACCCATCTACGATCACAAC AACAACAACAACAACAACAACAACCACGACCACGACCACGACCTTCAACA CCTCTACTCATACTAATAAACCATCTTTAACTTCAACACTATCGCTTCAC AACAATACTGTCCCACCTCAAACAACAGAGGACAAAGAAGAAGATAATCA CCATGGTAATGATTCACTCGCAACAACACAAACGCCATTGCTGTATTCAA CATTATCACCAACCACATCGGGCACCACTTCAACCACGCCCTTCAAACGC CCTGGAAATGATGGTAATGGTGGTGAAAATCGAGTCAAAAGTAAACGAGG TCCGTACGGTTTCCACGGAGTATCAAATCCGCATTGTCCTTACCCCATGG TGAATTTCATTTCTCAATATGCAGACGTAGTGGCTTTGAAAGATGGCTCA AATAATGGTGTCTCTGGACAATATGTGTATCCCCTGACAGACAGGTTGTG TATAGGACGGATTAAATTTTCGTGAGATCGATAATTTTGGTTCCACGTTT GACCTTTTGACTCTCCGAATGTTGAACGAAGCAGTATCCAAATATCTTGG TGAAGATGAACCATTTCATGGGACAGGTGGTCTGGTCATTACTTTCAACA GTATAAACAAAATGGTATACCAAGTGGCGATCGTCTCCAACTATACACAA ACCTTTGTTGTGATGAATTTGCTGGAGCTAGAATGGGTTGATTACGTTAA ATCAAGATCTTGCTGCTGAAGATGTTTGGAAGATCAACCAGTACAGTGTA ATAACCGGTTTCGTTGATCCAGGATGGAAGGACTTCAGAAAAAATAAAGT CAAGTATCATCTGAAACAACGTCGATCATTGGTTGGTCTGTTGGAGCTTT TTCTTTACTCATTTTCTGTATTATTGTGTACGTCGTTTTGAAAAGAAGAC CACGTGATCAGTTCGAACAAGCCTGAACCCATCTACGATCACAACAACAA CAACAACAACAACAACAACCACGACCACGACCACGACCTTCAACACCTCT ACTCATACTAATAAACCATCTTTAACTTCAACACTATCGCTTCACAACAA TACTGTCCCACCTCAAACAACAGAGGACAAAGAAGAAGATAATCACCATG GTAATGATTCACTCGCAACAACACAAACGCCATTGCTGTATTCAACATTA TCACCAACCACATCGGGCACCACTTCAACCACGCCCTTCAAACGCCCTGG AAATGATGGTAATGGTGGTGAAAATCGAGTCAAAAGTAAACGAGGTCCGT ACGGTTTCCACGGAGTATCAAATCCGCATTGTCCTTACCCCATGGTGAAT TTCATTTCTCAATATGCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAA TGGTGTCTCTGGACAATATGTGTATCCCCTGACAGACAGGTTGTGTATAG GACGGATTAAATTTTCGTGAGATCGATAATTTTGGTTCCACGTTTGACCT TTTGACTCTCCGAATGTTGAACGAAGCAGTATCCAAATATCTTGGTGAAG ATGAACCATTTCATGGGACAGGTGGTCTGGTCATTACTTTCAACAGTATA AACAAAATGGTATACCAAGTGGCGATCGTCTCCAACTATACACAAACCTT TGTTGTGATGAATTTGCTGGAGCTAGAATGGGTTGATTACGTTAAATCAA GATCTTGCTGCTGAAGATGTTTGGAAGATCAACCAGTACAGTGTAATAAC CGGTTTCGTTGATCCAGGATGGAAGGACTTCAGAAAAAATAAAGTCAAGT ATCATCTGAAACAACGTCGATCATTGGTTGGTCTGTTGGAGCTTTTTCTT TACTCATTTTCTGTATTATTGTGTACGTCGTTTTGAAAAGAAGACCACGT GATCAGTTCGAACAAGCCTGAACCCATCTACGATCACAACAACAACAACA ACAACAACAACAACCACGACCACGACCACGACCTTCAACACCTCTACTCA TACTAATAAACCATCTTTAACTTCAACACTATCGCTTCACAACAATACTG TCCCACCTCAAACAACAGAGGACAAAGAAGAAGATAATCACCATGGTAAT GATTCACTCGCAACAACACAAACGCCATTGCTGTATTCAACATTATCACC AACCACATCGGGCACCACTTCAACCACGCCCTTCAAACGCCCTGGAAATG ATGGTAATGGTGGTGAAAATCGAGTCAAAAGTAAACGAGGTCCGTACGGT TTCCACGGAGTATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTCAT TTCTCAATATGCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGGTG TCTCTGGACAATATGTGTATCCCCTGACAGACAGGTTGTGTATAGGACGG ATTAAATTTTCGTGAGATCGATAATTTTGGTTCCACGTTTGACCTTTTGA CTCTCCGAATGTTGAACGAAGCAGTATCCAAATATCTTGGTGAAGATGAA CCATTTCATGGGACAGGTGGTCTGGTCATTACTTTCAACAGTATAAACAA AATGGTATACCAAGTGGCGATCGTCTCCAACTATACACAAACCTTTGTTG TGATGAATTTGCTGGAGCTAGAATGGGTTGATTACGTTAAATCAAGATCT TGCTGCTGAAGATGTTTGGAAGATCAACCAGTACAGTGTAATAACCGGTT TCGTTGATCCAGGATGGAAGGACTTCAGAAAAAATAAAGTCAAGTATCAT CTGAAACAACGTCGATCATTGGTTGGTCTGTTGGAGCTTTTTCTTTACTC ATTTTCTGTATTATTGTGTACGTCGTTTTGAAAAGAAGACCACGTGATCA GTTCGAACAAGCCTGAACCCATCTACGATCACAACAACAACAACAACAAC AACAACAACCACGACCACGACCACGACCTTCAACACCTCTACTCATACTA ATAAACCATCTTTAACTTCAACACTATCGCTTCACAACAATACTGTCCCA CCTCAAACAACAGAGGACAAAGAAGAAGATAATCACCATGGTAATGATTC ACTCGCAACAACACAAACGCCATTGCTGTATTCAACATTATCACCAACCA CATCGGGCACCACTTCAACCACGCCCTTCAAACGCCCTGGAAATGATGGT AATGGTGGTGAAAATCGAGTCAAAAGTAAACGAGGTCCGTACGGTTTCCA CGGAGTATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTCATTTCTC AATATGCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGGTGTCTCT GGACAATATGTGTATCCCCTGACAGACAGGTTGTGTATAGGACGGATTAA ATTTTCGTGAGATCGATAATTTTGGTTCCACGTTTGACCTTTTGACTCTC CGAATGTTGAACGAAGCAGTATCCAAATATCTTGGTGAAGATGAACCATT TCATGGGACAGGTGGTCTGGTCATTACTTTCAACAGTATAAACAAAATGG TATACCAAGTGGCGATCGTCTCCAACTATACACAAACCTTTGTTGTGATG AATTTGCTGGAGCTAGAATGGGTTGATTACGTTAAATCAAGATCTTGCTG CTGAAGATGTTTGGAAGATCAACCAGTACAGTGTAATAACCGGTTTCGTT GATCCAGGATGGAAGGACTTCAGAAAAAATAAAGTCAAGTATCATCTGAA ACAACGTCGATCATTGGTTGGTCTGTTGGAGCTTTTTCTTTACTCATTTT CTGTATTATTGTGTACGTCGTTTTGAAAAGAAGACCACGTGATCAGTTCG AACAAGCCTGAACCCATCTACGATCACAACAACAACAACAACAACAACAA CAACCACGACCACGACCACGACCTTCAACACCTCTACTCATACTAATAAA CCATCTTTAACTTCAACACTATCGCTTCACAACAATACTGTCCCACCTCA AACAACAGAGGACAAAGAAGAAGATAATCACCATGGTAATGATTCACTCG CAACAACACAAACGCCATTGCTGTATTCAACATTATCACCAACCACATCG GGCACCACTTCAACCACGCCCTTCAAACGCCCTGGAAATGATGGTAATGG TGGTGAAAATCGAGTCAAAAGTAAACGAGGTCCGTACGGTTTCCACGGAG TATCAAATCCGCATTGTCCTTACCCCATGGTGAATTTCATTTCTCAATAT GCAGACGTAGTGGCTTTGAAAGATGGCTCAAATAATGGTGTCTCTGGACA ATATGTGTATCCCCTGACAGACAGGTTGTGTATAGGACGGATTAAATTTT CGTGAGATCGATAATTTTGGTTCCACGTTTGACCTTTTGACTCTCCGAAT GTTGAACGAAGCAGTATCCAAATATCTTGGTGAAGATGAACCATTTCATG GGACAGGTGGTCTGGTCATTACTTTCAACAGTATAAACAAAATGGTATAC CAAGTGGCGATCGTCTCCAACTATACACAAACCTTTGTTGTGATGAATTT GCTGGAGCTAGAATGGGTTGATTACGTTAAATCAAGATCTTGCTGCTGAA GATGTTTGGAAGATCAACCAGTACAGTGTAATAACCGGTTTCGTTGATCC AGGATGGAAGGACTTCAGAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003018-exon-sc0000024-1575043694:820774..820888 | TCONS_00003018-exon-sc0000024-1575043694:820774..820888 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1575043694:820081..820306 | TCONS_00003018-exon-sc0000024-1575043694:820081..820306 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1575043694:819604..819759 | TCONS_00003018-exon-sc0000024-1575043694:819604..819759 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1575043694:818907..819224 | TCONS_00003018-exon-sc0000024-1575043694:818907..819224 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1575043694:817498..817896 | TCONS_00003018-exon-sc0000024-1575043694:817498..817896 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1510915933:820774..820888 | TCONS_00003018-exon-sc0000024-1510915933:820774..820888 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1510915933:820081..820306 | TCONS_00003018-exon-sc0000024-1510915933:820081..820306 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1510915933:819604..819759 | TCONS_00003018-exon-sc0000024-1510915933:819604..819759 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1510915933:818907..819224 | TCONS_00003018-exon-sc0000024-1510915933:818907..819224 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1510915933:817498..817896 | TCONS_00003018-exon-sc0000024-1510915933:817498..817896 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1491911889:820774..820888 | TCONS_00003018-exon-sc0000024-1491911889:820774..820888 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1491911889:820081..820306 | TCONS_00003018-exon-sc0000024-1491911889:820081..820306 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1491911889:819604..819759 | TCONS_00003018-exon-sc0000024-1491911889:819604..819759 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1491911889:818907..819224 | TCONS_00003018-exon-sc0000024-1491911889:818907..819224 | Clytia hemisphaerica | exon |
TCONS_00003018-exon-sc0000024-1491911889:817498..817896 | TCONS_00003018-exon-sc0000024-1491911889:817498..817896 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000024 | supercontig | sc0000024:817498..820888 - |
Blast
The following BLAST results are available for this feature:
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