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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003011 ID=TCONS_00003011|Name=TCONS_00003011|organism=Clytia hemisphaerica|type=transcript|length=1222bp AGTGCCATGGATAAGCTACCACATAGGCAAAGCCAAAATATCGAGTCGGC CAAATtacaccgggccacttatccgtgctatccagtctatcaaaaagccg GGATAGGTGAAAGACGGCAAAGAAAAGTTATAAATGCTAGATGTGTGTTT GTTTGCTGTCTCAATCTATTCCCAATCCGAGTCCCAATCAAGCCAGAAGC TCTGGAAGAAGGAGATATGACAAAGTGTAGTATCAGCATATTTTTATGTA TTATCATGTTATTATACCTGGTACCGTACGTTGGTTATAAgaatattgaa aatgtgtgaagccttcagatgctctaatttttgatattttaagcctaaaa tgctcttatttttcactattttgtgagtatttttgtgcgatGTTTGGtcc gtgaagccttaaaatgttcttgatttatttatttatataagaacaaatta tataagaacataaggcttcgtcGGCCAAAATCTTTAGAactagttaagaa cattttaagggttttgtgggctctaaaacgcctgttttcttaggaaaatg gtcaaaaatacttaaaaaatgctgaaaataagaaaatgttaagaacattt ttagacttgaaCCTCGAAAAGTTGCGCACATTTtgaatgctcttataaaa aaatgtgtgagagattttctataaaatttatatttgaaTACCACGTTGAC AACTGTTAACGTTTCTTAGTGCAAAACATGTTAATTTGAAAAGCATAAAA GTATTTAATTATGAAATGCTTGATATCTTTGTTAAATAAAATGGCTTTCA AACTGTTCGTTTGACTATTAGAAGCTGCTTGATTTATTTGGAAAACGCTT GAAATATGCTGAGATAATTGAGATTCTAAGTCGAAAGTTGCTTGTCGTGT TTTGGTATGATTTAATTAAGTGATATAAGGATTACGCAcccggggggagg ggtacttaggCGAATGAAGGGTACGGGTGCCGCCATTAATGGTGCTTTTT TGGGACTTTAAAGTCCATGTAAGGGttagaaaaaaacagaaaattagaTT TTAGTCCTACTAAGgttcggaaaaataggaaaaatttctactttttgctC AAATTAATCCCAATAAGGGTTGTAAAGATcgtaaaattttcctatttttt ctccCTTTTAGTCCCGTTAAGGGTCCGAGGTTCGAAAGTGTTGCGGCACT TACCCGTCAGCtcacaacccta Run BLAST on NCBI transcript from alignment at sc0000024:643728..645296- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003011 ID=TCONS_00003011|Name=TCONS_00003011|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at sc0000024:643728..645296- (Clytia hemisphaerica) AGTGCCATGGATAAGCTACCACATAGGCAAAGCCAAAATATCGAGTCGGC
CAAATTACACCGGGCCACTTATCCGTGCTATCCAGTCTATCAAAAAGCCG
GGATAGGTGAAAGACGGCAAAGAAAAGTGAGTGCAAAAATCTTTTTTATT
ATGTAATGTATTCTACATTTTTTGCGAGAAATTATAAAGAGACCCCGGAA
TTACTTTTACAGTAAAGTCAATTAAGTTATTGCATAATTTTATTCCCGCA
AGCCCACATCTATTTGAAACCAATTTTTGATGACGTCTTGCTTTATCTAT
TATTATATATATACAGTATCTGAAAATATATTTCTTTAAACTCAAAAAAA
ATGACGGCTTGTTGTGAGGTTTGGTGGCCATAAAGAAATATTTTTTTAAA
TATCTTTATGCGTTGAGCTTCTTGCTAATCAAAATTACTGGAAAGTTCTA
ACGAATGCTATTTTTGTTTAAAGGTTATAAATGCTAGATGTGTGTTTGTT
TGCTGTCTCAATCTATTCCCAATCCGAGTCCCAATCAAGCCAGAAGCTCT
GGAAGAAGGAGATATGACAAAGTGTAGTATCAGCATATTTTTATGTATTA
TCATGTTATTATACCTGGTACCGTACGTTGGTTATAAGAATATTGAAAAT
GTGTGAAGCCTTCAGATGCTCTAATTTTTGATATTTTAAGCCTAAAATGC
TCTTATTTTTCACTATTTTGTGAGTATTTTTGTGCGATGTTTGGTCCGTG
AAGCCTTAAAATGTTCTTGATTTATTTATTTATATAAGAACAAATTATAT
AAGAACATAAGGCTTCGTCGGCCAAAATCTTTAGAACTAGTTAAGAACAT
TTTAAGGGTTTTGTGGGCTCTAAAACGCCTGTTTTCTTAGGAAAATGGTC
AAAAATACTTAAAAAATGCTGAAAATAAGAAAATGTTAAGAACATTTTTA
GACTTGAACCTCGAAAAGTTGCGCACATTTTGAATGCTCTTATAAAAAAA
TGTGTGAGAGATTTTCTATAAAATTTATATTTGAATACCACGTTGACAAC
TGTTAACGTTTCTTAGTGCAAAACATGTTAATTTGAAAAGCATAAAAGTA
TTTAATTATGAAATGCTTGATATCTTTGTTAAATAAAATGGCTTTCAAAC
TGTTCGTTTGACTATTAGAAGCTGCTTGATTTATTTGGAAAACGCTTGAA
ATATGCTGAGATAATTGAGATTCTAAGTCGAAAGTTGCTTGTCGTGTTTT
GGTATGATTTAATTAAGTGATATAAGGATTACGCACCCGGGGGGAGGGGT
ACTTAGGCGAATGAAGGGTACGGGTGCCGCCATTAATGGTGCTTTTTTGG
GACTTTAAAGTCCATGTAAGGGTTAGAAAAAAACAGAAAATTAGATTTTA
GTCCTACTAAGGTTCGGAAAAATAGGAAAAATTTCTACTTTTTGCTCAAA
TTAATCCCAATAAGGGTTGTAAAGATCGTAAAATTTTCCTATTTTTTCTC
CCTTTTAGTCCCGTTAAGGGTCCGAGGTTCGAAAGTGTTGCGGCACTTAC
CCGTCAGCTCACAACCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003011-exon-sc0000024-1575043694:645171..645296 | TCONS_00003011-exon-sc0000024-1575043694:645171..645296 | Clytia hemisphaerica | exon |
TCONS_00003011-exon-sc0000024-1575043694:643728..644823 | TCONS_00003011-exon-sc0000024-1575043694:643728..644823 | Clytia hemisphaerica | exon |
TCONS_00003011-exon-sc0000024-1510915933:645171..645296 | TCONS_00003011-exon-sc0000024-1510915933:645171..645296 | Clytia hemisphaerica | exon |
TCONS_00003011-exon-sc0000024-1510915933:643728..644823 | TCONS_00003011-exon-sc0000024-1510915933:643728..644823 | Clytia hemisphaerica | exon |
TCONS_00003011-exon-sc0000024-1491911889:645171..645296 | TCONS_00003011-exon-sc0000024-1491911889:645171..645296 | Clytia hemisphaerica | exon |
TCONS_00003011-exon-sc0000024-1491911889:643728..644823 | TCONS_00003011-exon-sc0000024-1491911889:643728..644823 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000024 | supercontig | sc0000024:643728..645296 - |
Blast
The following BLAST results are available for this feature:
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