TCONS_00003011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003011
Unique NameTCONS_00003011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003011 ID=TCONS_00003011|Name=TCONS_00003011|organism=Clytia hemisphaerica|type=transcript|length=1222bp
AGTGCCATGGATAAGCTACCACATAGGCAAAGCCAAAATATCGAGTCGGC
CAAATtacaccgggccacttatccgtgctatccagtctatcaaaaagccg
GGATAGGTGAAAGACGGCAAAGAAAAGTTATAAATGCTAGATGTGTGTTT
GTTTGCTGTCTCAATCTATTCCCAATCCGAGTCCCAATCAAGCCAGAAGC
TCTGGAAGAAGGAGATATGACAAAGTGTAGTATCAGCATATTTTTATGTA
TTATCATGTTATTATACCTGGTACCGTACGTTGGTTATAAgaatattgaa
aatgtgtgaagccttcagatgctctaatttttgatattttaagcctaaaa
tgctcttatttttcactattttgtgagtatttttgtgcgatGTTTGGtcc
gtgaagccttaaaatgttcttgatttatttatttatataagaacaaatta
tataagaacataaggcttcgtcGGCCAAAATCTTTAGAactagttaagaa
cattttaagggttttgtgggctctaaaacgcctgttttcttaggaaaatg
gtcaaaaatacttaaaaaatgctgaaaataagaaaatgttaagaacattt
ttagacttgaaCCTCGAAAAGTTGCGCACATTTtgaatgctcttataaaa
aaatgtgtgagagattttctataaaatttatatttgaaTACCACGTTGAC
AACTGTTAACGTTTCTTAGTGCAAAACATGTTAATTTGAAAAGCATAAAA
GTATTTAATTATGAAATGCTTGATATCTTTGTTAAATAAAATGGCTTTCA
AACTGTTCGTTTGACTATTAGAAGCTGCTTGATTTATTTGGAAAACGCTT
GAAATATGCTGAGATAATTGAGATTCTAAGTCGAAAGTTGCTTGTCGTGT
TTTGGTATGATTTAATTAAGTGATATAAGGATTACGCAcccggggggagg
ggtacttaggCGAATGAAGGGTACGGGTGCCGCCATTAATGGTGCTTTTT
TGGGACTTTAAAGTCCATGTAAGGGttagaaaaaaacagaaaattagaTT
TTAGTCCTACTAAGgttcggaaaaataggaaaaatttctactttttgctC
AAATTAATCCCAATAAGGGTTGTAAAGATcgtaaaattttcctatttttt
ctccCTTTTAGTCCCGTTAAGGGTCCGAGGTTCGAAAGTGTTGCGGCACT
TACCCGTCAGCtcacaacccta
Run BLAST on NCBI

transcript from alignment at sc0000024:643728..645296-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003011 ID=TCONS_00003011|Name=TCONS_00003011|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at sc0000024:643728..645296- (Clytia hemisphaerica)
AGTGCCATGGATAAGCTACCACATAGGCAAAGCCAAAATATCGAGTCGGC
CAAATTACACCGGGCCACTTATCCGTGCTATCCAGTCTATCAAAAAGCCG
GGATAGGTGAAAGACGGCAAAGAAAAGTGAGTGCAAAAATCTTTTTTATT
ATGTAATGTATTCTACATTTTTTGCGAGAAATTATAAAGAGACCCCGGAA
TTACTTTTACAGTAAAGTCAATTAAGTTATTGCATAATTTTATTCCCGCA
AGCCCACATCTATTTGAAACCAATTTTTGATGACGTCTTGCTTTATCTAT
TATTATATATATACAGTATCTGAAAATATATTTCTTTAAACTCAAAAAAA
ATGACGGCTTGTTGTGAGGTTTGGTGGCCATAAAGAAATATTTTTTTAAA
TATCTTTATGCGTTGAGCTTCTTGCTAATCAAAATTACTGGAAAGTTCTA
ACGAATGCTATTTTTGTTTAAAGGTTATAAATGCTAGATGTGTGTTTGTT
TGCTGTCTCAATCTATTCCCAATCCGAGTCCCAATCAAGCCAGAAGCTCT
GGAAGAAGGAGATATGACAAAGTGTAGTATCAGCATATTTTTATGTATTA
TCATGTTATTATACCTGGTACCGTACGTTGGTTATAAGAATATTGAAAAT
GTGTGAAGCCTTCAGATGCTCTAATTTTTGATATTTTAAGCCTAAAATGC
TCTTATTTTTCACTATTTTGTGAGTATTTTTGTGCGATGTTTGGTCCGTG
AAGCCTTAAAATGTTCTTGATTTATTTATTTATATAAGAACAAATTATAT
AAGAACATAAGGCTTCGTCGGCCAAAATCTTTAGAACTAGTTAAGAACAT
TTTAAGGGTTTTGTGGGCTCTAAAACGCCTGTTTTCTTAGGAAAATGGTC
AAAAATACTTAAAAAATGCTGAAAATAAGAAAATGTTAAGAACATTTTTA
GACTTGAACCTCGAAAAGTTGCGCACATTTTGAATGCTCTTATAAAAAAA
TGTGTGAGAGATTTTCTATAAAATTTATATTTGAATACCACGTTGACAAC
TGTTAACGTTTCTTAGTGCAAAACATGTTAATTTGAAAAGCATAAAAGTA
TTTAATTATGAAATGCTTGATATCTTTGTTAAATAAAATGGCTTTCAAAC
TGTTCGTTTGACTATTAGAAGCTGCTTGATTTATTTGGAAAACGCTTGAA
ATATGCTGAGATAATTGAGATTCTAAGTCGAAAGTTGCTTGTCGTGTTTT
GGTATGATTTAATTAAGTGATATAAGGATTACGCACCCGGGGGGAGGGGT
ACTTAGGCGAATGAAGGGTACGGGTGCCGCCATTAATGGTGCTTTTTTGG
GACTTTAAAGTCCATGTAAGGGTTAGAAAAAAACAGAAAATTAGATTTTA
GTCCTACTAAGGTTCGGAAAAATAGGAAAAATTTCTACTTTTTGCTCAAA
TTAATCCCAATAAGGGTTGTAAAGATCGTAAAATTTTCCTATTTTTTCTC
CCTTTTAGTCCCGTTAAGGGTCCGAGGTTCGAAAGTGTTGCGGCACTTAC
CCGTCAGCTCACAACCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001648XLOC_001648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003011-exon-sc0000024-1575043694:645171..645296TCONS_00003011-exon-sc0000024-1575043694:645171..645296Clytia hemisphaericaexon
TCONS_00003011-exon-sc0000024-1575043694:643728..644823TCONS_00003011-exon-sc0000024-1575043694:643728..644823Clytia hemisphaericaexon
TCONS_00003011-exon-sc0000024-1510915933:645171..645296TCONS_00003011-exon-sc0000024-1510915933:645171..645296Clytia hemisphaericaexon
TCONS_00003011-exon-sc0000024-1510915933:643728..644823TCONS_00003011-exon-sc0000024-1510915933:643728..644823Clytia hemisphaericaexon
TCONS_00003011-exon-sc0000024-1491911889:645171..645296TCONS_00003011-exon-sc0000024-1491911889:645171..645296Clytia hemisphaericaexon
TCONS_00003011-exon-sc0000024-1491911889:643728..644823TCONS_00003011-exon-sc0000024-1491911889:643728..644823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:643728..645296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0793084	0	0.0944595	0.0373216	0.0900538	0	1.12148	0.767682	0.14193	2.40245	0.163046	0.0483786	0.0198869	0.0640251	0.105165	0	0.111689	0.0389581	0.0677234	0.0495496	0.0803121	0	0.263214	0.0671179	0	0	0.0388722	0.0396046
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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