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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003006 ID=TCONS_00003006|Name=TCONS_00003006|organism=Clytia hemisphaerica|type=transcript|length=7718bpRun BLAST on NCBI protein sequence of TCONS_00003006-protein >TCONS_00003006-protein ID=TCONS_00003006-protein|Name=TCONS_00003006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1951bp MRVDDLKGKLNIATGNQTISNVKTNPEVDRKLRISISKNDEVVHITTLGDRun BLAST on NCBI transcript from alignment at sc0000024:524261..561506- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003006 ID=TCONS_00003006|Name=TCONS_00003006|organism=Clytia hemisphaerica|type=transcript|length=37246bp|location=Sequence derived from alignment at sc0000024:524261..561506- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:524261..561506- >TCONS_00003006 ID=TCONS_00003006|Name=TCONS_00003006|organism=Clytia hemisphaerica|type=CDS|length=87840bp|location=Sequence derived from alignment at sc0000024:524261..561506- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003006 vs. Swiss-Prot (Human)
Match: WNK1 (Serine/threonine-protein kinase WNK1 OS=Homo sapiens GN=WNK1 PE=1 SV=2) HSP 1 Score: 464.922 bits (1195), Expect = 6.102e-132 Identity = 239/384 (62.24%), Postives = 298/384 (77.60%), Query Frame = 2
Query: 500 QDNEDIDDELQEKAISASRDGRFLKFDEEVGRGAFKTVYKGLDTETGVAVAWCELQDRKLSRSERARFKEEADLLKTLQHPNIVKFHDYWEITSSLKNGTKERKLILVTELMTSGTLKTYIKRFTVVKEKILINWCRQILKGLNFLHTRVPAIIHRDLKCDNIFIXXXXXXXXXXXXXXXXFKKASFVKSVIGTPEFMAPEMYEERYDESVDVYAFGMCMLEMASGEYPYMECQNPAQIYRRVTSGVPPESLNKVQSEELRKLIVGCTKKEKSERLTIKDLIESEFLQAE-KLRVELTKAISDIVDENLSV-LPLR---LKGQRTNHSQDEAIEFDYKIDEDVPETLASEMVKSNHIQEDDMKNVVKAIRNAVSSYNREKEKIQ 1636
Q +DI+ EL+ KA+ S DGRFLKFD E+GRG+FKTVYKGLDTET V VAWCELQDRKL++SER RFKEEA++LK LQHPNIV+F+D WE S++K ++ ++LVTELMTSGTLKTY+KRF V+K K+L +WCRQILKGL FLHTR P IIHRDLKCDNIFITG TG +K+GDLGLAT K+ASF KSVIGTPEFMAPEMYEE+YDESVDVYAFGMCMLEMA+ EYPY ECQN AQIYRRVTSGV P S +KV E++++I GC ++ K ER +IKDL+ F Q E +RVEL + + E +++ L LR +K + + +EAIEF + ++ DVPE +A EMV+S ++ E D K + KAI++ VS R++E+ Q
Sbjct: 199 QQQDDIE-ELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWE--STVKG---KKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKSVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEETGVRVELAE---EDDGEKIAIKLWLRIEDIKKLKGKYKDNEAIEFSFDLERDVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKRKREQRQ 573 The following BLAST results are available for this feature:
BLAST of TCONS_00003006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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