TCONS_00003004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003004
Unique NameTCONS_00003004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2165

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003004 ID=TCONS_00003004|Name=TCONS_00003004|organism=Clytia hemisphaerica|type=transcript|length=2165bp
TTTGTTTTGCTTAGTTGGTAACTTGGTGCATAAAGAACGAAATTTCTCTT
TGCGTGAACCGGCGGATTACTGGTAAAGAAAGTCGGGTTGGAAAATCAAG
attCAAAGGAGACAGATCATCATGGCAGGACTACCCAGAAGAATAATGAA
GGAAACAAGTAGACTGGTGTCAGAACCGATCGCAGGAATCACCGCACTTC
CAGACGAACACAACGGAAGATACTTTCATGTGCAAATGGCAGGACCAAAA
GATtCACCTTTCGAAGGAGGGACGTTCAACTTGGAGTTGTTCTTACCAGA
AGAATATCCAATGGCTGCTCCCAAAGTTCGGTTCATGACCAAAATATATC
ACCCTAATGTCGATAAACTTGGAAGAATTTGTTTAGATATTTTAAAAGAT
AAATGGAGTCCTGCATTACAAATACGAACAGTCTTGCTATCCATTCAAGC
ACTAATGAGTGCTCCCAATCCAGATGATCCTTTAGCCAACGATGTCGCTG
AACTATGGAAAAGCAACGAAGAACAGGCCCTCAAAACCGCTCGCGAATAT
ACTAAAATGTACGCAACTGGTAAGAAATAAGGCTAGTTCGTAATGGTGAA
GATAAGTTGTCAACAGACGTCTCACTTCTCACTCACGCATCAAAAAATAC
TTttatcaaaaactaaaaaaaacaattccttAAATTGTTGGGACGAGATG
GAATGATTGGGACGGCGCTTATGTGGAGGTTTCCAAAGAACGGTAACTTA
GAAATGACATTATAGAATCAAAAAAAGAATAGCTGTTACATGATGcaatt
taaaattgaaacatgttgttttttttttatattttcaatttcattttttt
tttctgtataGTTTATtagttttagaaaatttaaaagcattttttttttt
cttctttcttttgacaTGTTTGCAAGCACCAATCAGGCAAGTAGGTATTA
AATTTAGCatagaaattgaaaatatttggtaTTCTTGACTCATCTTCTTT
CCATACAGTCGATAACAAAGGTGTTTGTTTGCACATGCGCAGTTCTCTAA
AAATCAAGAGAAAAGCACGAaactactacacgttttttataagaacatcc
ataaTTATTACagtcttcagatgttcttaactttttgagtttcaagccta
agtatattcttattttcaccattttgtgagtatttttgtgtaatttttcg
GGTTCTTtcgagtccataaagccttaaaatgttcttaacttcttaacatt
ttggctacgaagccttatgttcttatataggtttgttcttataagaaacg
tGTAGTACCTTGATGGCTATCAACGTCAAAATTAGGTATCCGAGAGCAAA
AGGATTAGGTAGATATTGTGTTACTATTTGCAATCAAACGTacatcaaaa
atatcaaaaatatttatcttttcaaaaaatagagGGCTTATAATTTCGTA
TTttgcggcaagggctgaaagctgttaatcagcagcctctcgccaacttt
tgctcgttctcctacgcagctcctattttaGCAAACGCCCACCGCttttt
atgttcccgccctctgacatgattaattaccAGACTAGTTTACTAAGATA
AGATGTATTTTGCTCTGCTTAAATTATGATTTTGCAAAGATGTTAAGACC
CTATCCACACGTGGCGGCTCCGTTCGATTCCGaatcaaaatgaaacaatt
ctATTGGTTTATTTAACAATAGAAAGCTTGCTCTGCGAAACAGAATCGTA
ACGTGTGAATGGGGTCTTAACTGATAATCGTTACATTACATTTTGAGATG
AATATTTTTACCATTTATAATTTGTACATGCAAAAGTATTTggtattaaa
aaataatattattattatttggtTTTCGAATTTAATCTGTTCCATTTTAT
TATTATCCTGTTTAGTTGAAATTGAGGAGAAAATTATGGTATGTGTTTTA
CTCGATCAGTTATAGGAAACTAAAAAAATGTtgtaatagatcttatcgga
gttttttatttttcttaaaaaacgatgcattgtgggactgtttcgggagt
attacaatagaaatctgttaagaattcctcgagggaattctattgtaata
ctcccgaaacaatcccacaatgcatcgctcttttagaaaaatcaaaaact
ccgataagatctatt
Run BLAST on NCBI

protein sequence of TCONS_00003004-protein

>TCONS_00003004-protein ID=TCONS_00003004-protein|Name=TCONS_00003004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MAGLPRRIMKETSRLVSEPIAGITALPDEHNGRYFHVQMAGPKDSPFEGG
TFNLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQ
IRTVLLSIQALMSAPNPDDPLANDVAELWKSNEEQALKTAREYTKMYATG
KK
Run BLAST on NCBI

transcript from alignment at sc0000024:508300..520091-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003004 ID=TCONS_00003004|Name=TCONS_00003004|organism=Clytia hemisphaerica|type=transcript|length=11792bp|location=Sequence derived from alignment at sc0000024:508300..520091- (Clytia hemisphaerica)
TTTGTTTTGCTTAGTTGGTAACTTGGTGCATAAAGAACGAAATTTCTCTT
TGCGTGAACCGGCGGATTACTGGTAAAGAAAGTCGGGTTGGAAAATCAAG
GTAAAATCGAAGGAAAATGTGTGTACAGTCGGAGTTAACATTGCTATACT
GCAATTTTCATTTATAGTACTATACTACAATAATGTAACCTCTAAACTAC
TTGAAGCCACTTTTTCACACTTTTTGAAGTTCTAAATTGTACTCTGAAAA
TTTTAGATAAAAAAGAGGAGAAGAAGGTCATAAATTTAATTTCATTCTAG
TCTATATATCAAAGAGACCAAGTGCCAAAGGAGAAATCATAGTCAAAATT
GACCTCGTAATATGCGTATATATTATATCATGTAGCATAGAAGTTAATGA
TAGTTTCAAGTTGGACACGGCTGAATGGTCGAAGAGAAATATCCAAGACA
AAAAAGACAGTTCAACTTTTTATTTTAAGATTCAAAGGAGACAGATCATC
ATGGCAGGACTACCCAGAAGAATAATGAAGGTATGATTTCTCAATCTAAA
TTTGGAGGATGTCCCTGGTCAAGGGTCCTCTCTTAGCTTGTAACATCTCT
GATACAGGTTGTCTAGACGGTGTGTCAACCACCGAACCCTACAAAACAAA
CCAATTTTTGTAATCAAACTATCCTTCAAAATCTAACAATACCTGTGAAA
TTACCGAAGTCCTAGTGAACTTTAGGAAAATCTCTTGATTAGTTTGATTG
GCATTAGATGAGTTTGGTAAGACAGCCGCCATTGAGATGTATTCCCGCCG
CCGCCGCCAGCAGGTGTTAAAAATACATGCAGGCAGTCAGGGCTAACCTG
ATAACAGCTGGTCATAATTTTCTTTAGNATTCCCGCCGCCGCCGCCAGCC
AGTTACATCAAAATGCCTCGAAAATGTCAATATGAAAATTGCGTTCAGAG
AACATAAGTCTCGCTCATTATAAAAAGGCTGAGACAAACTTTCAATAATT
GGATTGTAACATCGAGTTAAGTCTCTTTTGTTAAGTCACCAGGGGGTAAA
TAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATAATTACCCTTTCCAAAT
AAACCTCTTTGGTGGCGAGCGTAGTCTACTCTGACGTAATTGTAAAATTT
ATGTGATGGGAGTTTGAGATAGTAATGTAATGTTGTTTGGGGAATTATGA
AGTTCTCCTGAGTTCTCTGGAATTTCGATTGCATTTATTCAGGTTGATTT
TTTATGACTTCTAATGGTACTTTTTCTAACGGTTTGTGTAATTTACGATG
CGCGATCCAACGATTCACGATGCGCGATGCACGATCCATGCATATATTAT
GTTAATTATTCTAATTATGCATTTACNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACCTCAACAAT
CAAATCAAATCAAAACATAAACTTTTTTGCCCATGCTTTGAATTGAATAT
CTTGTAACCTTTTTGCTTTCTTTATTAAAAAAAAACGTTTCTCCGATTAA
ACCAACCGAATGCATTGGATTGAGACAGGGTTATAAACAAAAATTTACAA
TGTTGTGGTAAAGTAAAGCACCAGTTGCAATTCAGTTGGTGAAAGGCTTT
TATAAGAACATGCCAAAAGTAATGTAGCCAATAATCGAATAATTCCTTTT
TTACCTTATTCACTGTTCTTAAAAAATAATAAACGTACAAAAATGAGTTT
GTGTTTTAATAAATTTTTCGCGCCAAAACTTGTCTATGACGTCAAGGCTT
TTTCTTTCATTTTAATAACGAGTGCGGCATATGCGTGACGAAAGTTTTCT
TTCTCTCTCGCTATCAATTTTTGGTTTTTCTACACAGAAGATATAAGTTA
TTTTAATCATTCTGATTATGATAAATTATTTCCCCTTCTTTTTTTAATTT
TTTTTCGTTATTGTTATATGATGTTTGTAGCTAGCATTATGAAAACTTTT
TCGTGCATAATTAGAATAATTAACATAATATATGCATGGATCGTGCATCG
CGCATCGTGAATCGTTGGATCGCGCATCGTAAATTACACAANAACGAGTT
TGATTACTCTGTTCTCACACTTATGTCTTTTTTTTTCGCGTCCTTTTCCG
TGATTACTTTTATTTATATTTTTAAAGACAGGTAAGAAGGCATATTGATG
TAACTGCCAGCAGGTGTTAAAAATACATGCAGGCAGTCAGGGCTAACCTG
ATAACAGCTGGTCATAATTTTCTTTAGGGCATGGTAAACCTCTGAAGGCC
CTTTTAAATTAACCATCTGAGGAAAATACCATTAAAAAGTTTAGTCTAAT
GTTTAGGGCAGTGTAGACCTAAAGCTCTAAAACAGCATCTAATAACATGA
AAACCAGAATATGATTCTTCAATGCGAATCAAAACTATAAAGTGAAATTA
CAAACATCAATTTGTCAGATCTAAAAAATTAATAACCACAATGTCATCAT
TGACAATAAAACAAACGATTTTCTGTCAAGAGCCTTGTAAACATTCCAAC
AACTTCCATCGAAATGATCTATCACAGCTCAGTCTACCATTTTTAGCGCG
GTCCAAGTATTGAGCCGAGAACGCTCCGCGAACTCCTGCGCGAGTGAAAG
ACTTTGCTCAATCTGTCAATCATTTTCTCAAGCGAAGAGTACGCGGAGCA
GTTCTAGCTTTACGATAGTGCCGCTGTCATCAATGGATAGTATTCAATAT
TTCAAATTTCATAAAAGTTTTTCGTCGTTGAATAATTGAACTTTGAAGGT
TCTGTCACGGAAGGAACGCAGCAAAGACATTAAAAAAGACCAAAGTATGC
TGATTCAGATTCCTGTGAATTTAAAGAGAATTTTAATTTAAAACCAAAAT
ACCACCAGAAGAAACTTATGTCTATCTGCTTTCATTGAAAAAAGAACTGA
GTCAAAAAAATTAATTTCGATGGCTACAGGCCTTTGCAACTGAGAAAGGT
CAGTGTCACGGAAGGACACCGTCACGGAAGGAAAAAATTCCTATTTTTCA
AAATCAGCAATAGCGTTAGAAATGTTGACTGAAACTAGTGGAGTGACACA
TCATATTATGAATCATACCCATTTTTACTATTCAGTTCATTTCAAAACCT
TGAAACTGTATTTTTATTGTTCAACCATAATGGTGATGATAATTAGCAAA
TTTTACAGGAAAGATTATATTTTTTAAGCAAAAAACGTAAAAACGCGACC
TTNGATAATTAGCAAATTTTACAGGAAAGATTATATTTTTTAAGCAAAAA
ACGTGAAAACGTGACCTTGAAAGCAAGTGAGCTACTTCCAAAGGCCCAAT
TAGCATATTTCCATGGTGTTGAAGCGATCTAGAGGGTTTAGAACCGGCTG
GGAACAGTAGTTTTGCCGGAAAACCGATTTTTAGGCCTCCAGAGCCGCCT
GGGCTTACGCTGTAAGCTTACAGCGCTGTACTGGAGCCTTAGTTAAGCTT
ATTCTGAGCTCCATACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAATTTAAGGGTTATATTTAAAAAAAAATCACAGTT
ACTTATTTTGTTTGTAAGATTTTTGATTTTGTGTTTTGGTTGACTACTTT
TCAATTTGGCCCTTTTGCAAAAAAAAGTAAAAATAGAAAAGTTGTATTTT
TTACTGCTCTATTCACATACTGTATTTGAAAGATCTTCTATGTGGCGTTT
TTTTGCAAACTTCAAAAAACNCATTGATCTGAACCCCCTGATTTACAGCA
GCTTTTACTAACGTGTTGCGGTTGACCTTGTTTATCAAAACGGGGATTTT
AATATTTCTTGCGCGGGAAAAGAATATGTGACGTCATAATTTCTGCTTTC
AGTTTGATGTGTGTACTCCGTCTTCTTGGAATTTTTTAATGGCATGAAAA
CAGAATATGCTTTGTCTTTAAGAACAAATTTCTTAAAGGCTTTTGTTGTT
CTGTAAATATTTCTTTTTGGATTAAGAAATTCTATCTTTTATTGTTCTAA
TGATTATAGTATTTCTTTATAAGATGCTTTGTTGTCTTTTGAATCTTTCT
GTAAACTTGCATATGTTTTGCATACTTTCCAACTAAATCCAACCACGAAT
TTTGTGTTCCTGTATTTTTGCATATAATTCAAGATGGCAGATGGAAAGGA
GAAAAGGTCTATAGGGCGTCGTATCAGTTTTTGACTTTCCTGAACACAAC
AAGATTCTTGTTGTAGAATTTTCCGCGGGAGGACTATTTTCCTCAGATGT
TTAAATTTCAAGTGCCTTCAGAGCTGTTCAGAGGTTTATCGTGCGTGTAA
GAAAATTACGAACAACTGTTATCAGGATATTGTATGCTGCTTACATGAAA
AAATCTGCAGTCTCAAAAACTGCAAAAATTCTTCTATTTTTCGAAATTCC
AGACAGCCTGTAGATTTTCAAATAAAGCAGCATGTGATAGATTGTAGTCT
AATCTTACCCTGGGTTTATTAAAAAAAACACGATTGAAAAGATCTCATTT
TAAAGAGGGATGTCGAACTTAGAACAGGGGGGTGATTTGCAGGAAATTGT
TCCAAAATGAAAAATCGCACGGTTTTGCAAATAGCTGACTGTGAAATAAG
TAAACTTTTTTTGGCCCAAAAATTACCTAAACATGTGTCATGTTTTTCAG
ACACTTTTATCTGAAAAGAAATTAAATTTTTAACCAAATTTGCGCTGAGA
CACTCATCATGCTGAAAAAACCACACTTGTCCCGTACACGGCGGACTCAA
ATACTCAAAATCAGTAATATGTACAAAAAATGTTTTGTATTCCCTTAAGT
CACTCTTATGTATGTATCAAAAGTCACTAAAAGTTTTACCATATGTATCT
TTCTTTTTCAGAATATTTCACACTTTATGCAGCTTTATGTGTTGCGTACG
GGACAAAATTAGGATTTCCATTTGTCCCTTACGCGACAAAATTTGAAAAT
CCTTAAATCTAACAAGAAAATTCTATTTTGACCAAATCTTTTACATTGAT
CGGTAAATTTACACCATATTGCTTCCTTAGATTTTTTAAGTTTGTTGTAT
AATTGCAAGTTATTGAAGGTGAAAGAGTGATTTTCCCCCTATTCATAAGT
TTTTCTGAAAGTCTAAAGGTTTATGAAGATTTCCCAAAAGTTATTTGTTA
TTACAATTTTCTCTTCAAAGTGAGAGGCTGTTACACTGCTACAATTTTGT
CGCGTACAGGACATATTTTTTTTTAGCTGTAAAAGCTGTGGAAAAAATTG
AAAACATGAAAACAGCTTGTAAAGTGTGACGAAACCATTTTTTCTTAAAA
CCTGGCCCCTAGAGAATACAAAAACACCAAAAGAAGTTAAATTTTTGAGA
ATTTTTTCAGCCTTTCGGAACAGTTTCATGCAAATTCAAGGGGTCAAAGG
AAAATGTACGTACGCAGAGAAAAATTTTTCATAGCCCTTTTTTGCTTTTT
TTGTTGTCAACTTTTACGCTTCTTATACACATCAAGGAAAAGAAAAGGTT
TCTTATTAATAAACATTGAGTTTCATGTATGAAATAAAGGTCCAAACCAA
ACGATTTGAATTCGAACCAGAAGTTTGAAAGTGTCCTTGATTACGTAGCC
CCCGTCTTTAAAGGAGGGAAACACTAGAATAGACGATATCGGCTTTCTGA
ATTCTCCATGATGCATTGTTAGGGTTTGGGTTATCGTCCGTAATCATTCG
GGGAGAATTCGGTAAAGCCGATATCGTCTATTGCCGATTCCAGCTGAATG
CCTTGCACAGGCAGCACTATATAATTTAGGTACAGTACCTTATCTGATAC
AATATTTAACCCTCTCCTTGGGGCGCCCTTGGCATCAAGAATATAAAAAT
AATTGGTGGTTAAGGTAATAAATCAAACTAATGGAGCTTCAATTAAATTT
GACACAGGTGCTCCGCTCAGGCAAATCGCCAAGTCCTTCGAGATAACGAC
ATTGCTGAGTACACAGACATAGAATAAAAATTCAAAGTGGAAGCCAAACA
AAACTGACAAAAACAAGAATCGGGAGTTTGTAATTGCTTACTACAGCAGA
ATAAGACAGAGAGACGTAGTGAAATAAAAAGTAAACAAACTTTGAACCTT
TTGTTCAAACAGGTTCAAATAAAGAAAATATTCTAGCTGTAGTAATGTTT
ACATTCAGAGTCCATTGTCCATTTTCCACCAGACATACAGCAATATTTCA
AACCATACTGCAGCATTACTGGCAATGAATTCTGACTTGAAAACTTAGGG
TCTTATTACACCTCAAAAAATTAATTTTACAATAACATTTGACGCGAATC
CAAAAATAAGATTTGTATTTTAATCAGAACAGGGGTTAATTTGTTTACAA
CAAACCGTCAAATTGAAAATCAAATAAATATTTTGATTAATTTTCAGTCA
GTTTCTTCATTCGTTCCTCCGACAATCAGCTATTTCCTTTCATTCCATTC
CAGGTATTAGCAAATTTTCCAGTGGGGGTAGAGGCTAAACATTGTTGAAT
ATTCAACACCTGGCTTTTGGGCCAAGCAGGGAGTATCGGGTTGTTTTCTG
CCCTTTACTGTTAATACCGCTTTCGACCATGTTGAAGGCTAAATTTGTGT
AGCTTATGCGCCCAACAAACAACAACCCAACATATCTTGAGTGTAAAATA
AGTCTAAATTTACCCCCAGCAACTGCACTTGACTGTCAGAGAGTCATGGT
AAACTTTCATAACCTTTTTTATATATAAGAACTTTCTTATAACTTTACAA
ATTGATCATTTATCTCTGATATTATCTAAAATTTTAGCAGCGTTACAGCG
TCTACCTGAAAATTTGAAATTGGTGGACAAATTTTAGAAGTTCTTTGAAA
ATAAGGAAATTTTTTATGTCAAGTGGAATCTTCAAAAATATTTTATTATA
CAATTTTAGCCTGTATTTTGTCTTCTAGGAAACAAGTAGACTGGTGTCAG
AACCGATCGCAGGAATCACCGCACTTCCAGACGAACACAACGGAAGATAC
TTTCATGTGCAAATGGCAGGACCAAAAGATGTAAGAATATTCCCCTTTCA
AATTTTCTGATGTTAAACTTAAATCATTGTCCTTCAAATAGTAGGTTTGA
TAACAAAACATTTTGATTAGTGAAGGCTTGCACAAGAAACGAGTTCTAGT
CTCTACGAATTCTATCTTGGTAGCAATAACCTTTACAAAACTTGTTTAAA
ACAAGATATTTTAAATTATTACTTTTTAAGAAAGCTTCAAAACCTGAAAA
TTTCTGATAATTGAAAAACAAGGGAAACATACATGTTTTTTTTATAAGCA
TATAAAAATCCGAAAACAGGCTCAGAGATGCTTAGGTCGAAAGCTTAAAA
TGGCAGAAAAAATGCTTGAGGGATGCTTATATCCTAATACTTATTACTGC
TTATATACTGCTATACTACCTTAAGTTTTGGCGTGGATTTAATTTGGCGA
ATGACCAAAATGCGATTTTTGGCGGGATTTAATATGGGGAATGCTCAATT
ATGTAAAATGTGGCGGGGATTTAATTTGGCGAGTGGGAAGGCTTTAGTCT
CTGGTAAACTAAAAAATACGTGGTATTTTACTAAGAAATACATATTCTCC
ATAGAGTTTCTATCTTAAAAAAATCTTATTAAATTTGGCGGGGATTTAAT
TTGGCGAATAACCGAATTTTGAAATTTTGGCGAGGATTTGCCAAATTCGC
CAAATTTAATCCCCGCAAAATTTATCCATTTAAGGTACTATAATACTGCT
TATATCCATACTACAAAGTAGCTTATACTTTTTTCATAGGCTCGAGGTAA
TGCTTAGCATATGCTTAATTTTTCCCCATATCTGATCGGAAGNCTTATAC
TTTTTTCATAGGCTCGAGGTAATGCTTAGCATATGCTTAATTTTTCCCCA
TATCTGAGCCTAGATATGCTTTTAAGTGCAATGCTTATAAAAAAACATAT
AGTTCTAATAACAGTTGACTCTCTCTAATTTGAACTCTAACGGGAAGTCC
AATTTGCTCGAATTAGAGAGAGAGATTCGAATTATAGAAGTTCGTATTAG
CGATAGTCTACTGTATGCTAAAATCAGATACACGTTTTTTTCAGTCACCT
TTCGAAGGAGGGACGTTCAACTTGGAGTTGTTCTTACCAGAAGAATATCC
AATGGCTGCTCCCAAAGTTCGGTTCATGACCAAAATATATCACCCTAATG
TCGATAAACTTGGAAGAATTTGTTTAGATATTTTAAAAGGTTTGTTGGCC
CAGCATCGGGCCTTTCATTAGCATGTCGCTGTCCGTGGTACTATATGTAC
GTTTTGGAGGTAGCAGCACTTTGTCAGTTCAAGTTAATTTAGGAAGAAAC
AGCGCCTTGTTACTTTTTTGAGTCGCTGGGCCATCACATCCTACGGACTT
TTTGTTACAATTTATTTGTCTTATCTAAACCCACTTAGTGTTATATTTCT
CATAGAGACTGCACAAAACCTTATTTATAAATTGCTTAATGCAGTAAAAA
GGTTGATATTATGACTTTTTTATCTCTATAAAATCCAATTTTTCCTGGAC
AACCCAGAAAAGAGAAAATCTCTCTAATTTTTTTAATGATGAATCTTTCT
ATGTACTAGATAAATGGAGTCCTGCATTACAAATACGAACAGTCTTGCTA
TCCATTCAAGCACTAATGAGTGCTCCCAATCCAGATGATCCTTTAGCCAA
CGATGTCGCTGAACTATGGAAAAGCAACGAAGAACAGGCCCTCAAAACCG
GTTTGGATAACTTTGTTTTTTTAAAGAGATTTTACAATGCCTCAGATCTC
TTTTTTTAGGAGGTCGGCTTCTAAGGTTCAAGTGTTTTGCCTTTTTCTAT
AGGCTTCCCGTTATTTTAAACATACTAATTTCTTGTTCTCCCGGGGTGGG
GGGGGTCTGAGGGTCTTATTCTGATTCCCAAAAAAAATGTCTCTTGGAGT
CACCCGGCCGCTTTTCGGAAGCAAGGCAATTTTTTTGCCTAACGATCCCC
TTTTCTTGTTTTCTCCAGTTATTTGGTGTTTTCGATCATCCCGTTCTTTC
CCGTTAAAATTTTTAGAAGGTTTGGAAAACATAGCTTTGAAACTGTCAGT
GAAGGTAAAGGATTGCTTGGAAGAAGTTATGATCGCCATAGTATTGAGTC
AGCTCGTAAACGTACACTTTTTCGTATCAGATCAATAAAGCTCAAGTTTC
GAATTTTCAACCCCCCTTCCCTTCGTAAAAGTTGAAAACTTTCTTCTTTT
AAGGGGGCGTTATCATGTTTTTTTTTTCATTGAATAGTAGAGCGTCGTTT
ATGAGAGTTTCTTGTTGACGGTGGCTTTCAATGTTATCGAATGGAGTGTG
TTGAAAAATAGAACGTCGAACAGGGCCCGTCCCGTGAATTTGGGGGGGGG
GCAAAAAATATAAAGTCTAAGGAGGTTAATTAACTTTTTGCTTCGCTTTA
TAAAAAGTGCGGGGGCCCTGTCGAATTAGAGAGCCTCGATTATATCTTTG
ACTATTTCTGTTTCAGCTCGCGAATATACTAAAATGTACGCAACTGGTAA
GAAATAAGGCTAGTTCGTAATGGTGAAGATAAGTTGTCAACAGACGTCTC
ACTTCTCACTCACGCATCAAAAAATACTTTTATCAAAAACTAAAAAAAAC
AATTCCTTAAATTGTTGGGACGAGATGGAATGATTGGGACGGCGCTTATG
TGGAGGTTTCCAAAGAACGGTAACTTAGAAATGACATTATAGAATCAAAA
AAAGAATAGCTGTTACATGATGCAATTTAAAATTGAAACATGTTGTTTTT
TTTTTATATTTTCAATTTCATTTTTTTTTTCTGTATAGTTTATTAGTTTT
AGAAAATTTAAAAGCATTTTTTTTTTTCTTCTTTCTTTTGACATGTTTGC
AAGCACCAATCAGGCAAGTAGGTATTAAATTTAGCATAGAAATTGAAAAT
ATTTGGTATTCTTGACTCATCTTCTTTCCATACAGTCGATAACAAAGGTG
TTTGTTTGCACATGCGCAGTTCTCTAAAAATCAAGAGAAAAGCACGAAAC
TACTACACGTTTTTTATAAGAACATCCATAATTATTACAGTCTTCAGATG
TTCTTAACTTTTTGAGTTTCAAGCCTAAGTATATTCTTATTTTCACCATT
TTGTGAGTATTTTTGTGTAATTTTTCGGGTTCTTTCGAGTCCATAAAGCC
TTAAAATGTTCTTAACTTCTTAACATTTTGGCTACGAAGCCTTATGTTCT
TATATAGGTTTGTTCTTATAAGAAACGTGTAGTACCTTGATGGCTATCAA
CGTCAAAATTAGGTATCCGAGAGCAAAAGGATTAGGTAGATATTGTGTTA
CTATTTGCAATCAAACGTACATCAAAAATATCAAAAATATTTATCTTTTC
AAAAAATAGAGGGCTTATAATTTCGTATTTTGCGGCAAGGGCTGAAAGCT
GTTAATCAGCAGCCTCTCGCCAACTTTTGCTCGTTCTCCTACGCAGCTCC
TATTTTAGCAAACGCCCACCGCTTTTTATGTTCCCGCCCTCTGACATGAT
TAATTACCAGACTAGTTTACTAAGATAAGATGTATTTTGCTCTGCTTAAA
TTATGATTTTGCAAAGATGTTAAGACCCTATCCACACGTGGCGGCTCCGT
TCGATTCCGAATCAAAATGAAACAATTCTATTGGTTTATTTAACAATAGA
AAGCTTGCTCTGCGAAACAGAATCGTAACGTGTGAATGGGGTCTTAACTG
ATAATCGTTACATTACATTTTGAGATGAATATTTTTACCATTTATAATTT
GTACATGCAAAAGTATTTGGTATTAAAAAATAATATTATTATTATTTGGT
TTTCGAATTTAATCTGTTCCATTTTATTATTATCCTGTTTAGTTGAAATT
GAGGAGAAAATTATGGTATGTGTTTTACTCGATCAGTTATAGGAAACTAA
AAAAATGTTGTAATAGATCTTATCGGAGTTTTTTATTTTTCTTAAAAAAC
GATGCATTGTGGGACTGTTTCGGGAGTATTACAATAGAAATCTGTTAAGA
ATTCCTCGAGGGAATTCTATTGTAATACTCCCGAAACAATCCCACAATGC
ATCGCTCTTTTAGAAAAATCAAAAACTCCGATAAGATCTATT

Coding sequence (CDS) from alignment at sc0000024:508300..520091-

>TCONS_00003004 ID=TCONS_00003004|Name=TCONS_00003004|organism=Clytia hemisphaerica|type=CDS|length=2295bp|location=Sequence derived from alignment at sc0000024:508300..520091- (Clytia hemisphaerica)
CTCGCGAATATACTAAAATGTACGCAACTGGTAAGAAATAAATAAATGGA
GTCCTGCATTACAAATACGAACAGTCTTGCTATCCATTCAAGCACTAATG
AGTGCTCCCAATCCAGATGATCCTTTAGCCAACGATGTCGCTGAACTATG
GAAAAGCAACGAAGAACAGGCCCTCAAAACCGTCACCTTTCGAAGGAGGG
ACGTTCAACTTGGAGTTGTTCTTACCAGAAGAATATCCAATGGCTGCTCC
CAAAGTTCGGTTCATGACCAAAATATATCACCCTAATGTCGATAAACTTG
GAAGAATTTGTTTAGATATTTTAAAAGGAAACAAGTAGACTGGTGTCAGA
ACCGATCGCAGGAATCACCGCACTTCCAGACGAACACAACGGAAGATACT
TTCATGTGCAAATGGCAGGACCAAAAGATATGGCAGGACTACCCAGAAGA
ATAATGAAGCTCGCGAATATACTAAAATGTACGCAACTGGTAAGAAATAA
ATAAATGGAGTCCTGCATTACAAATACGAACAGTCTTGCTATCCATTCAA
GCACTAATGAGTGCTCCCAATCCAGATGATCCTTTAGCCAACGATGTCGC
TGAACTATGGAAAAGCAACGAAGAACAGGCCCTCAAAACCGTCACCTTTC
GAAGGAGGGACGTTCAACTTGGAGTTGTTCTTACCAGAAGAATATCCAAT
GGCTGCTCCCAAAGTTCGGTTCATGACCAAAATATATCACCCTAATGTCG
ATAAACTTGGAAGAATTTGTTTAGATATTTTAAAAGGAAACAAGTAGACT
GGTGTCAGAACCGATCGCAGGAATCACCGCACTTCCAGACGAACACAACG
GAAGATACTTTCATGTGCAAATGGCAGGACCAAAAGATATGGCAGGACTA
CCCAGAAGAATAATGAAGCTCGCGAATATACTAAAATGTACGCAACTGGT
AAGAAATAAATAAATGGAGTCCTGCATTACAAATACGAACAGTCTTGCTA
TCCATTCAAGCACTAATGAGTGCTCCCAATCCAGATGATCCTTTAGCCAA
CGATGTCGCTGAACTATGGAAAAGCAACGAAGAACAGGCCCTCAAAACCG
TCACCTTTCGAAGGAGGGACGTTCAACTTGGAGTTGTTCTTACCAGAAGA
ATATCCAATGGCTGCTCCCAAAGTTCGGTTCATGACCAAAATATATCACC
CTAATGTCGATAAACTTGGAAGAATTTGTTTAGATATTTTAAAAGGAAAC
AAGTAGACTGGTGTCAGAACCGATCGCAGGAATCACCGCACTTCCAGACG
AACACAACGGAAGATACTTTCATGTGCAAATGGCAGGACCAAAAGATATG
GCAGGACTACCCAGAAGAATAATGAAGCTCGCGAATATACTAAAATGTAC
GCAACTGGTAAGAAATAAATAAATGGAGTCCTGCATTACAAATACGAACA
GTCTTGCTATCCATTCAAGCACTAATGAGTGCTCCCAATCCAGATGATCC
TTTAGCCAACGATGTCGCTGAACTATGGAAAAGCAACGAAGAACAGGCCC
TCAAAACCGTCACCTTTCGAAGGAGGGACGTTCAACTTGGAGTTGTTCTT
ACCAGAAGAATATCCAATGGCTGCTCCCAAAGTTCGGTTCATGACCAAAA
TATATCACCCTAATGTCGATAAACTTGGAAGAATTTGTTTAGATATTTTA
AAAGGAAACAAGTAGACTGGTGTCAGAACCGATCGCAGGAATCACCGCAC
TTCCAGACGAACACAACGGAAGATACTTTCATGTGCAAATGGCAGGACCA
AAAGATATGGCAGGACTACCCAGAAGAATAATGAAGCTCGCGAATATACT
AAAATGTACGCAACTGGTAAGAAATAAATAAATGGAGTCCTGCATTACAA
ATACGAACAGTCTTGCTATCCATTCAAGCACTAATGAGTGCTCCCAATCC
AGATGATCCTTTAGCCAACGATGTCGCTGAACTATGGAAAAGCAACGAAG
AACAGGCCCTCAAAACCGTCACCTTTCGAAGGAGGGACGTTCAACTTGGA
GTTGTTCTTACCAGAAGAATATCCAATGGCTGCTCCCAAAGTTCGGTTCA
TGACCAAAATATATCACCCTAATGTCGATAAACTTGGAAGAATTTGTTTA
GATATTTTAAAAGGAAACAAGTAGACTGGTGTCAGAACCGATCGCAGGAA
TCACCGCACTTCCAGACGAACACAACGGAAGATACTTTCATGTGCAAATG
GCAGGACCAAAAGATATGGCAGGACTACCCAGAAGAATAATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001645XLOC_001645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003004-exon-sc0000024-1575043694:519992..520091TCONS_00003004-exon-sc0000024-1575043694:519992..520091Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1575043694:519562..519612TCONS_00003004-exon-sc0000024-1575043694:519562..519612Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1575043694:512412..512513TCONS_00003004-exon-sc0000024-1575043694:512412..512513Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1575043694:511203..511347TCONS_00003004-exon-sc0000024-1575043694:511203..511347Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1575043694:510692..510832TCONS_00003004-exon-sc0000024-1575043694:510692..510832Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1575043694:508300..509925TCONS_00003004-exon-sc0000024-1575043694:508300..509925Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1510915933:519992..520091TCONS_00003004-exon-sc0000024-1510915933:519992..520091Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1510915933:519562..519612TCONS_00003004-exon-sc0000024-1510915933:519562..519612Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1510915933:512412..512513TCONS_00003004-exon-sc0000024-1510915933:512412..512513Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1510915933:511203..511347TCONS_00003004-exon-sc0000024-1510915933:511203..511347Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1510915933:510692..510832TCONS_00003004-exon-sc0000024-1510915933:510692..510832Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1510915933:508300..509925TCONS_00003004-exon-sc0000024-1510915933:508300..509925Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1491911889:519992..520091TCONS_00003004-exon-sc0000024-1491911889:519992..520091Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1491911889:519562..519612TCONS_00003004-exon-sc0000024-1491911889:519562..519612Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1491911889:512412..512513TCONS_00003004-exon-sc0000024-1491911889:512412..512513Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1491911889:511203..511347TCONS_00003004-exon-sc0000024-1491911889:511203..511347Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1491911889:510692..510832TCONS_00003004-exon-sc0000024-1491911889:510692..510832Clytia hemisphaericaexon
TCONS_00003004-exon-sc0000024-1491911889:508300..509925TCONS_00003004-exon-sc0000024-1491911889:508300..509925Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003004-proteinTCONS_00003004-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:508300..520091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.225	61.9874	55.0691	52.0619	58.9545	45.1322	56.9518	58.9301	45.9853	49.9775	37.0026	30.8497	26.544	28.6319	33.7459	36.2048	49.2949	44.0579	20.8743	25.9438	38.6395	38.1973	43.3468	44.5748	33.9664	40.8054	46.7687	35.3447	44.1024	40.9108
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
IPR023313UBQ-conjugating_AS
Blast
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BLAST of TCONS_00003004 vs. Swiss-Prot (Human)
Match: UBE2N (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 3.332e-84
Identity = 124/148 (83.78%), Postives = 137/148 (92.57%), Query Frame = 2 
Query:  122 MAGLPRRIMKETSRLVSEPIAGITALPDEHNGRYFHVQMAGPKDSPFEGGTFNLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALMSAPNPDDPLANDVAELWKSNEEQALKTAREYTKMYA 565
            MAGLPRRI+KET RL++EP+ GI A PDE N RYFHV +AGP+DSPFEGGTF LELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQAL+SAPNPDDPLANDVAE WK+NE QA++TAR +T++YA
Sbjct:    1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00003004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE2N3.332e-8483.78Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
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