TCONS_00003004-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003004-protein
Unique NameTCONS_00003004-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length152

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003004-protein ID=TCONS_00003004-protein|Name=TCONS_00003004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MAGLPRRIMKETSRLVSEPIAGITALPDEHNGRYFHVQMAGPKDSPFEGG
TFNLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQ
IRTVLLSIQALMSAPNPDDPLANDVAELWKSNEEQALKTAREYTKMYATG
KK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001645XLOC_001645Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003004TCONS_00003004Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
IPR023313UBQ-conjugating_AS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 6..149
e-value: 1.8E-64
score: 230.2
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 2..152
e-value: 9.4E-62
score: 208.3
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 6..149
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 7..143
e-value: 4.2E-46
score: 156.0
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBIQUITIN_CONJUGAT_2coord: 6..138
score: 40.061
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 5..144
e-value: 4.59427E-62
score: 188.95
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBIQUITIN_CONJUGAT_1coord: 76..91

Blast
[Close]
BLAST of TCONS_00003004-protein vs. Swiss-Prot (Human)
Match: UBE2N (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 2.231e-93
Identity = 124/148 (83.78%), Postives = 137/148 (92.57%), Query Frame = 0 
Query:    1 MAGLPRRIMKETSRLVSEPIAGITALPDEHNGRYFHVQMAGPKDSPFEGGTFNLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALMSAPNPDDPLANDVAELWKSNEEQALKTAREYTKMYA 148
            MAGLPRRI+KET RL++EP+ GI A PDE N RYFHV +AGP+DSPFEGGTF LELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQAL+SAPNPDDPLANDVAE WK+NE QA++TAR +T++YA
Sbjct:    1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00003004-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE2N2.231e-9383.78Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
back to top