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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002994 ID=TCONS_00002994|Name=TCONS_00002994|organism=Clytia hemisphaerica|type=transcript|length=1569bpRun BLAST on NCBI protein sequence of Poc1 >TCONS_00002994-protein ID=TCONS_00002994-protein|Name=Poc1|organism=Clytia hemisphaerica|type=polypeptide|length=291bp RTSKECTHTFYEYGGFVNHVEFHPNGTCIAAGGSDNTVKVWDIRMNKLLQRun BLAST on NCBI transcript from alignment at sc0000024:279199..291717- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002994 ID=TCONS_00002994|Name=TCONS_00002994|organism=Clytia hemisphaerica|type=transcript|length=12519bp|location=Sequence derived from alignment at sc0000024:279199..291717- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:279199..291717- >TCONS_00002994 ID=TCONS_00002994|Name=TCONS_00002994|organism=Clytia hemisphaerica|type=CDS|length=9636bp|location=Sequence derived from alignment at sc0000024:279199..291717- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002994 vs. Swiss-Prot (Human)
Match: POC1A (POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2) HSP 1 Score: 277.33 bits (708), Expect = 7.018e-87 Identity = 144/290 (49.66%), Postives = 178/290 (61.38%), Query Frame = 1
Query: 1 RTSKECTHTFYEYGGFVNHVEFHPNGTCIAAGGSDNTVKVWDIRMNKLLQHYQVHGGAVNSLSFHPSGNYLVSASADNTLKILDLMEGRLFYTLHGHQGGANCVKFSRNGEYFASGSSDEQVMVWKTNFDTIDYSQVLHAHRKRXXXXXXXXXXXXVDARSTNRTIDEDSTAINGFSKPVTQNGTGNDSDDVMNVGPALFSIPQPSGRDYSELARPASSKNGQVGEIPTTTPLERRDIPPQLSETLEHIVGQLDVITQTVSILEQRLTMCENKLRDCLDNQHRISLQIKP 870
++S+EC H++ E+GGFV +V+FHP+GTCIAA G DNTVKVWD+R ++LLQHYQ+H AVN LSFHPSGNYL++AS+D+TLKILDLMEGRL YTLHGHQG A V FSR GEYFASG SDEQVMVWK+NFD +D+ +V R P T + + +V P P GR G+ E + P E +P L+ TLEHIVGQLDV+TQTVSILEQRLT+ E+KL+ CL+NQ I + P
Sbjct: 174 KSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPR-----------------------------------PPATLASSMGNLPEV--------DFPVPPGR-------------GRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQCLENQQLIMQRATP 407 The following BLAST results are available for this feature:
BLAST of TCONS_00002994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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