Poc1 (polypeptide) - C. hemisphaerica

Overview
NamePoc1
Unique NameTCONS_00002994-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002994-protein ID=TCONS_00002994-protein|Name=Poc1|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
RTSKECTHTFYEYGGFVNHVEFHPNGTCIAAGGSDNTVKVWDIRMNKLLQ
HYQVHGGAVNSLSFHPSGNYLVSASADNTLKILDLMEGRLFYTLHGHQGG
ANCVKFSRNGEYFASGSSDEQVMVWKTNFDTIDYSQVLHAHRKRSATPSS
HTPTASVDARSTNRTIDEDSTAINGFSKPVTQNGTGNDSDDVMNVGPALF
SIPQPSGRDYSELARPASSKNGQVGEIPTTTPLERRDIPPQLSETLEHIV
GQLDVITQTVSILEQRLTMCENKLRDCLDNQHRISLQIKPT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001641XLOC_001641Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002994TCONS_00002994Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 29..43
score: 32.95
coord: 71..85
score: 37.51
coord: 113..127
score: 33.24
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 3..42
e-value: 1.6E-9
score: 47.6
coord: 87..126
e-value: 3.1E-9
score: 46.7
coord: 45..84
e-value: 7.3E-9
score: 45.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 5..42
e-value: 9.4E-8
score: 32.5
coord: 89..126
e-value: 1.9E-6
score: 28.4
coord: 47..82
e-value: 3.7E-7
score: 30.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 94..126
score: 13.282
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 52..93
score: 13.583
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 10..51
score: 13.717
NoneNo IPR availableGENE3D1.10.10.670coord: 80..169
e-value: 9.2E-19
score: 66.7
NoneNo IPR availableGENE3D2.40.50.140coord: 48..79
e-value: 1.7E-16
score: 59.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..236
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..47
e-value: 1.1E-12
score: 47.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 29..43
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 10..135
score: 32.087
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 4..147

Blast
[Close]
BLAST of Poc1 vs. Swiss-Prot (Human)
Match: POC1A (POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.775e-92
Identity = 145/290 (50.00%), Postives = 177/290 (61.03%), Query Frame = 0 
Query:    1 RTSKECTHTFYEYGGFVNHVEFHPNGTCIAAGGSDNTVKVWDIRMNKLLQHYQVHGGAVNSLSFHPSGNYLVSASADNTLKILDLMEGRLFYTLHGHQGGANCVKFSRNGEYFASGSSDEQVMVWKTNFDTIDYSQVLHAHRKRSATPSSHTPTASVDARSTNRTIDEDSTAINGFSKPVTQNGTGNDSDDVMNVGPALFSIPQPSGRDYSELARPASSKNGQVGEIPTTTPLERRDIPPQLSETLEHIVGQLDVITQTVSILEQRLTMCENKLRDCLDNQHRISLQIKP 290
            ++S+EC H++ E+GGFV +V+FHP+GTCIAA G DNTVKVWD+R ++LLQHYQ+H  AVN LSFHPSGNYL++AS+D+TLKILDLMEGRL YTLHGHQG A  V FSR GEYFASG SDEQVMVWK+NFD +D+ +V    R  +   SS      VD                                            P P GR             G+  E   + P E   +P  L+ TLEHIVGQLDV+TQTVSILEQRLT+ E+KL+ CL+NQ  I  +  P
Sbjct:  174 KSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMGNLPEVD-------------------------------------------FPVPPGR-------------GRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTEDKLKQCLENQQLIMQRATP 407
The following BLAST results are available for this feature:
BLAST of Poc1 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POC1A1.775e-9250.00POC1 centriolar protein homolog A OS=Homo sapiens ... [more]
back to top