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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002960 ID=TCONS_00002960|Name=TCONS_00002960|organism=Clytia hemisphaerica|type=transcript|length=1794bp
atgtcaaaaagtttagaaacatgtaagaaacatttaaggctcaaaaggcc
gatttcttaagaaacattgaggctgcttggtaaaactagtttcttaaaaa
acgcGTATATCGTCAAAAAACTTATAAAACCAGATTCGTGTTAATAGCGG
TTGACATTACTAATCAATTTCGATCAATCAAGAATCATATATTCGTTAAA
TTCCGAATCATCGATgcattaagaaaatattttccatccATAGTATTAAT
GTTAGAAGTTTTAGGGTTTGACATCACAGAAAAGACAGTAAGAAATGCCA
AATTAATGACTGTCACAAAGCTTGCAATTTGTCGTATTGTCATTGGGAAA
CCGAATGATTTTTGACCAAGATTATATGATGCTAATAGGTCAGTAAAATC
ATTCCAATTGGGTCTCTCGTCATTATCTTTGCTAAGTTTACCAGCCGTTT
TTATGAGATTGATGTGCGGTAAGATTTTGCCGAGTACTGACGAAATACGT
TGGACACAAATCATCATTCGTAAAGCAATAAGCAAAAATAAACATGTTCT
AAACATTGTCCAATAGGAAATCGATTCATTTCTCCTAATATATAATCCAA
CATGTGTGAAAAGATCTGCTACACCAAAGAAAGCTAATACGACGTTAAAA
GGAACAAAAAGTGAAGATAATGCTTCAGCTTCTGCGATGAAGACGGAAAA
CAACTCACATGCTTCCGATGGCGTTAACTTGCAGAAGATTCCTTGTTCCC
GATCATCGTCATCAGCGTCTTCGTTGCCATTACCATCTCTACCAAAAGGA
CTATGCAGTTGTCGTGTCGGTAATATTGATTGAGGTCGTGATGATGTATT
TTTACCACGTTTCACTTCTGCACAATTTGTATAAACTCGTTCatcaaaaa
atgaattgaacAGATCTAACGTAATGAAATTCGCCAAAGctgagaaaaaa
ttgaaacagcAATTTCTGCGCAAGGCTGCAAAACTGGCAACAGGATAAAT
TTGAAGGTACGAAGTTTTACCAAACAAACTCATAAGGTGTACCGAATCTT
TGACAATCAACCGAGATACGAAGATGAATTGATATGCAATAAAGCCAACA
ATGTAGACAGTAATACACCAATTAGATATATACATTAACAACCACAAGAG
ATATGACTGATCACCAAATACTATAACTTCCCCAACAactgaatttttct
ttctcataaaaaagacaacaaaaaaTGACCATTGTAATATCTCCAGTAGG
AACGGAAATATAACACTTTTAATGGCAACAGATTTCAACCAATCACGATT
GTGTCCTGGAGCATGTGGATCACCATCAATGAAACTATTTCGAACGTAAA
AACGGACTGCAACTGAATTTGTAATATTCCGACTCAACATTCTGGAGTAC
GCACTTGATCCAAAGATATATGCACCAATAGGGATACAGAGCAACGGGAT
AATATACAATGAAAACTGCACCCACATATCAATGAAGCTCCGGTGAAATA
CACCAAGAGCAAAGACTAATCCAATACTACCAAGGAGCAAtaaaaacata
acttttgataagcAAACCATAAAGAAAGATGGTGATAAATAGGATTGTCC
AAAGAAATATTGTATGAATAAAACAGGTCTCAATATATCTTTGAATTGCT
CTCGACGTTGGTAAGTGACGCCTGGTCTGTGAAATACATCATCGTCAGCT
GTAGAATATTTGTGATCTTTGGAGAGAGGTTCGTAATGGTGTTGATAATG
ATGACCCatcttttttgtgttttgtgttTTAAGATATATCTAAA Run BLAST on NCBI transcript from alignment at sc0000024:634183..635976+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002960 ID=TCONS_00002960|Name=TCONS_00002960|organism=Clytia hemisphaerica|type=transcript|length=1794bp|location=Sequence derived from alignment at sc0000024:634183..635976+ (Clytia hemisphaerica)
atgtcaaaaagtttagaaacatgtaagaaacatttaaggctcaaaaggcc
gatttcttaagaaacattgaggctgcttggtaaaactagtttcttaaaaa
acgcGTATATCGTCAAAAAACTTATAAAACCAGATTCGTGTTAATAGCGG
TTGACATTACTAATCAATTTCGATCAATCAAGAATCATATATTCGTTAAA
TTCCGAATCATCGATgcattaagaaaatattttccatccATAGTATTAAT
GTTAGAAGTTTTAGGGTTTGACATCACAGAAAAGACAGTAAGAAATGCCA
AATTAATGACTGTCACAAAGCTTGCAATTTGTCGTATTGTCATTGGGAAA
CCGAATGATTTTTGACCAAGATTATATGATGCTAATAGGTCAGTAAAATC
ATTCCAATTGGGTCTCTCGTCATTATCTTTGCTAAGTTTACCAGCCGTTT
TTATGAGATTGATGTGCGGTAAGATTTTGCCGAGTACTGACGAAATACGT
TGGACACAAATCATCATTCGTAAAGCAATAAGCAAAAATAAACATGTTCT
AAACATTGTCCAATAGGAAATCGATTCATTTCTCCTAATATATAATCCAA
CATGTGTGAAAAGATCTGCTACACCAAAGAAAGCTAATACGACGTTAAAA
GGAACAAAAAGTGAAGATAATGCTTCAGCTTCTGCGATGAAGACGGAAAA
CAACTCACATGCTTCCGATGGCGTTAACTTGCAGAAGATTCCTTGTTCCC
GATCATCGTCATCAGCGTCTTCGTTGCCATTACCATCTCTACCAAAAGGA
CTATGCAGTTGTCGTGTCGGTAATATTGATTGAGGTCGTGATGATGTATT
TTTACCACGTTTCACTTCTGCACAATTTGTATAAACTCGTTCatcaaaaa
atgaattgaacAGATCTAACGTAATGAAATTCGCCAAAGctgagaaaaaa
ttgaaacagcAATTTCTGCGCAAGGCTGCAAAACTGGCAACAGGATAAAT
TTGAAGGTACGAAGTTTTACCAAACAAACTCATAAGGTGTACCGAATCTT
TGACAATCAACCGAGATACGAAGATGAATTGATATGCAATAAAGCCAACA
ATGTAGACAGTAATACACCAATTAGATATATACATTAACAACCACAAGAG
ATATGACTGATCACCAAATACTATAACTTCCCCAACAactgaatttttct
ttctcataaaaaagacaacaaaaaaTGACCATTGTAATATCTCCAGTAGG
AACGGAAATATAACACTTTTAATGGCAACAGATTTCAACCAATCACGATT
GTGTCCTGGAGCATGTGGATCACCATCAATGAAACTATTTCGAACGTAAA
AACGGACTGCAACTGAATTTGTAATATTCCGACTCAACATTCTGGAGTAC
GCACTTGATCCAAAGATATATGCACCAATAGGGATACAGAGCAACGGGAT
AATATACAATGAAAACTGCACCCACATATCAATGAAGCTCCGGTGAAATA
CACCAAGAGCAAAGACTAATCCAATACTACCAAGGAGCAAtaaaaacata
acttttgataagcAAACCATAAAGAAAGATGGTGATAAATAGGATTGTCC
AAAGAAATATTGTATGAATAAAACAGGTCTCAATATATCTTTGAATTGCT
CTCGACGTTGGTAAGTGACGCCTGGTCTGTGAAATACATCATCGTCAGCT
GTAGAATATTTGTGATCTTTGGAGAGAGGTTCGTAATGGTGTTGATAATG
ATGACCCatcttttttgtgttttgtgttTTAAGATATATCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002960-exon-sc0000024-1491911889:634183..635976 | TCONS_00002960-exon-sc0000024-1491911889:634183..635976 | Clytia hemisphaerica | exon |
| TCONS_00002960-exon-sc0000024-1510915933:634183..635976 | TCONS_00002960-exon-sc0000024-1510915933:634183..635976 | Clytia hemisphaerica | exon |
| TCONS_00002960-exon-sc0000024-1575043694:634183..635976 | TCONS_00002960-exon-sc0000024-1575043694:634183..635976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:634183..635976 + |
Blast
The following BLAST results are available for this feature:
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