TCONS_00002960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002960
Unique NameTCONS_00002960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002960 ID=TCONS_00002960|Name=TCONS_00002960|organism=Clytia hemisphaerica|type=transcript|length=1794bp
atgtcaaaaagtttagaaacatgtaagaaacatttaaggctcaaaaggcc
gatttcttaagaaacattgaggctgcttggtaaaactagtttcttaaaaa
acgcGTATATCGTCAAAAAACTTATAAAACCAGATTCGTGTTAATAGCGG
TTGACATTACTAATCAATTTCGATCAATCAAGAATCATATATTCGTTAAA
TTCCGAATCATCGATgcattaagaaaatattttccatccATAGTATTAAT
GTTAGAAGTTTTAGGGTTTGACATCACAGAAAAGACAGTAAGAAATGCCA
AATTAATGACTGTCACAAAGCTTGCAATTTGTCGTATTGTCATTGGGAAA
CCGAATGATTTTTGACCAAGATTATATGATGCTAATAGGTCAGTAAAATC
ATTCCAATTGGGTCTCTCGTCATTATCTTTGCTAAGTTTACCAGCCGTTT
TTATGAGATTGATGTGCGGTAAGATTTTGCCGAGTACTGACGAAATACGT
TGGACACAAATCATCATTCGTAAAGCAATAAGCAAAAATAAACATGTTCT
AAACATTGTCCAATAGGAAATCGATTCATTTCTCCTAATATATAATCCAA
CATGTGTGAAAAGATCTGCTACACCAAAGAAAGCTAATACGACGTTAAAA
GGAACAAAAAGTGAAGATAATGCTTCAGCTTCTGCGATGAAGACGGAAAA
CAACTCACATGCTTCCGATGGCGTTAACTTGCAGAAGATTCCTTGTTCCC
GATCATCGTCATCAGCGTCTTCGTTGCCATTACCATCTCTACCAAAAGGA
CTATGCAGTTGTCGTGTCGGTAATATTGATTGAGGTCGTGATGATGTATT
TTTACCACGTTTCACTTCTGCACAATTTGTATAAACTCGTTCatcaaaaa
atgaattgaacAGATCTAACGTAATGAAATTCGCCAAAGctgagaaaaaa
ttgaaacagcAATTTCTGCGCAAGGCTGCAAAACTGGCAACAGGATAAAT
TTGAAGGTACGAAGTTTTACCAAACAAACTCATAAGGTGTACCGAATCTT
TGACAATCAACCGAGATACGAAGATGAATTGATATGCAATAAAGCCAACA
ATGTAGACAGTAATACACCAATTAGATATATACATTAACAACCACAAGAG
ATATGACTGATCACCAAATACTATAACTTCCCCAACAactgaatttttct
ttctcataaaaaagacaacaaaaaaTGACCATTGTAATATCTCCAGTAGG
AACGGAAATATAACACTTTTAATGGCAACAGATTTCAACCAATCACGATT
GTGTCCTGGAGCATGTGGATCACCATCAATGAAACTATTTCGAACGTAAA
AACGGACTGCAACTGAATTTGTAATATTCCGACTCAACATTCTGGAGTAC
GCACTTGATCCAAAGATATATGCACCAATAGGGATACAGAGCAACGGGAT
AATATACAATGAAAACTGCACCCACATATCAATGAAGCTCCGGTGAAATA
CACCAAGAGCAAAGACTAATCCAATACTACCAAGGAGCAAtaaaaacata
acttttgataagcAAACCATAAAGAAAGATGGTGATAAATAGGATTGTCC
AAAGAAATATTGTATGAATAAAACAGGTCTCAATATATCTTTGAATTGCT
CTCGACGTTGGTAAGTGACGCCTGGTCTGTGAAATACATCATCGTCAGCT
GTAGAATATTTGTGATCTTTGGAGAGAGGTTCGTAATGGTGTTGATAATG
ATGACCCatcttttttgtgttttgtgttTTAAGATATATCTAAA
Run BLAST on NCBI

transcript from alignment at sc0000024:634183..635976+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002960 ID=TCONS_00002960|Name=TCONS_00002960|organism=Clytia hemisphaerica|type=transcript|length=1794bp|location=Sequence derived from alignment at sc0000024:634183..635976+ (Clytia hemisphaerica)
atgtcaaaaagtttagaaacatgtaagaaacatttaaggctcaaaaggcc gatttcttaagaaacattgaggctgcttggtaaaactagtttcttaaaaa acgcGTATATCGTCAAAAAACTTATAAAACCAGATTCGTGTTAATAGCGG TTGACATTACTAATCAATTTCGATCAATCAAGAATCATATATTCGTTAAA TTCCGAATCATCGATgcattaagaaaatattttccatccATAGTATTAAT GTTAGAAGTTTTAGGGTTTGACATCACAGAAAAGACAGTAAGAAATGCCA AATTAATGACTGTCACAAAGCTTGCAATTTGTCGTATTGTCATTGGGAAA CCGAATGATTTTTGACCAAGATTATATGATGCTAATAGGTCAGTAAAATC ATTCCAATTGGGTCTCTCGTCATTATCTTTGCTAAGTTTACCAGCCGTTT TTATGAGATTGATGTGCGGTAAGATTTTGCCGAGTACTGACGAAATACGT TGGACACAAATCATCATTCGTAAAGCAATAAGCAAAAATAAACATGTTCT AAACATTGTCCAATAGGAAATCGATTCATTTCTCCTAATATATAATCCAA CATGTGTGAAAAGATCTGCTACACCAAAGAAAGCTAATACGACGTTAAAA GGAACAAAAAGTGAAGATAATGCTTCAGCTTCTGCGATGAAGACGGAAAA CAACTCACATGCTTCCGATGGCGTTAACTTGCAGAAGATTCCTTGTTCCC GATCATCGTCATCAGCGTCTTCGTTGCCATTACCATCTCTACCAAAAGGA CTATGCAGTTGTCGTGTCGGTAATATTGATTGAGGTCGTGATGATGTATT TTTACCACGTTTCACTTCTGCACAATTTGTATAAACTCGTTCatcaaaaa atgaattgaacAGATCTAACGTAATGAAATTCGCCAAAGctgagaaaaaa ttgaaacagcAATTTCTGCGCAAGGCTGCAAAACTGGCAACAGGATAAAT TTGAAGGTACGAAGTTTTACCAAACAAACTCATAAGGTGTACCGAATCTT TGACAATCAACCGAGATACGAAGATGAATTGATATGCAATAAAGCCAACA ATGTAGACAGTAATACACCAATTAGATATATACATTAACAACCACAAGAG ATATGACTGATCACCAAATACTATAACTTCCCCAACAactgaatttttct ttctcataaaaaagacaacaaaaaaTGACCATTGTAATATCTCCAGTAGG AACGGAAATATAACACTTTTAATGGCAACAGATTTCAACCAATCACGATT GTGTCCTGGAGCATGTGGATCACCATCAATGAAACTATTTCGAACGTAAA AACGGACTGCAACTGAATTTGTAATATTCCGACTCAACATTCTGGAGTAC GCACTTGATCCAAAGATATATGCACCAATAGGGATACAGAGCAACGGGAT AATATACAATGAAAACTGCACCCACATATCAATGAAGCTCCGGTGAAATA CACCAAGAGCAAAGACTAATCCAATACTACCAAGGAGCAAtaaaaacata acttttgataagcAAACCATAAAGAAAGATGGTGATAAATAGGATTGTCC AAAGAAATATTGTATGAATAAAACAGGTCTCAATATATCTTTGAATTGCT CTCGACGTTGGTAAGTGACGCCTGGTCTGTGAAATACATCATCGTCAGCT GTAGAATATTTGTGATCTTTGGAGAGAGGTTCGTAATGGTGTTGATAATG ATGACCCatcttttttgtgttttgtgttTTAAGATATATCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001627XLOC_001627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002960-exon-sc0000024-1491911889:634183..635976TCONS_00002960-exon-sc0000024-1491911889:634183..635976Clytia hemisphaericaexon
TCONS_00002960-exon-sc0000024-1510915933:634183..635976TCONS_00002960-exon-sc0000024-1510915933:634183..635976Clytia hemisphaericaexon
TCONS_00002960-exon-sc0000024-1575043694:634183..635976TCONS_00002960-exon-sc0000024-1575043694:634183..635976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:634183..635976 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0901316 0 0 0.126649 0.154648 0.305451 0.71006 0.693006 0.978139 1.18465 0 0.926375 0.646858 0.806728 0.720492 2.36749 1.11053 0.550491 0.870105 0 0.974278 0.571751 1.01863 0.854869 0.339404 0.879119 0 0 1.36197 0.764269
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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