TCONS_00002925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002925
Unique NameTCONS_00002925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002925 ID=TCONS_00002925|Name=TCONS_00002925|organism=Clytia hemisphaerica|type=transcript|length=3616bp
NNTCGGACGGTATTTTGGGAATTTTCTTTCGTGAATCTTCCTCCGAAATC
TTCAGGTTCAGAAACTTTAAGAAAGGGTCTGTTTCTGATGATTTTGTGAT
GGGACCTGGGAAAGGATGTACATATTGAATACAAATTCATTCGATGGAAT
TTTTCACCAACGTTTGAACTTTCTCTGTGACCATTTACTTTATGCACAGG
TGTTTATTTCCTTCATCAAACTTTATTTTCGCTCAAAAGGTTTTACCTAA
AAGTTGGCTCTCCCCATTATCGCGAAAAAGGCGTTCCCTCTAATAGGTTG
TACAGAGCACTTTGCTTCCTAATTCAAGCGATTTATCACGAAATTCAAGA
AAGCCTTCATGTCTGGTTAGCGTCCGTTGCTTTCCCCTCtttcagatttt
tgaaaacttttttttgaaacccCTCCCCTTTTGGGAATTGTCCAAATGTC
AACAATTTAAAAGCCGTTTATCGAATTATATTTTGCTGAGTCTTTCTGAA
TCTTTTTCACACATTTCCCCAGAGATCTTAAATACatgtttttgctttta
taagcataacgcttataagcatatacaggctcagtttttgttacctaaac
aatggctctattgtttgagaacaatagaatgctaagcataatgcgagcct
gatatagggacagacacttgcttataaaaaaacatgtattttcatatgag
tttaaaaaaaactgtttaaTGGACTCTCACTAATTGGAGCTTTTATAATT
CAAATACTGCTTAATTTAGCTCCCGTTCGTAAATCTTCATAATTCGCACC
TCTTTAGAACTCGAACATTCAAGTTCGAATTAGTGAGAATTTGTTTTGGT
GGTTAGAATTATGGCCGATTTTTACAACTCTAATCAAAGTTTttcctact
ctcgggtacctaataaatgGGGTGATTGGATGGGTGGAGAAACTTTAAAA
ACTTAATCTCCTggtttgaagatttttgaaaaaaaggccAATACAGACAA
AAGAGAAAactctcaaaaatattttcctaaaTATTCATAAGTGAGGGGGG
GGGAtcggaataagaatgtcctgagtggaaagtttttgaaaaattaatta
gtgggAAGACGCATGTTAATTAGCTGCACAGAACTTTGTTTCAAGTCAAC
GTTCATCTTTACGTTTTATGGACATCATGGACGCTAGATGAACGTTCAAA
CAACGTTGTAGTAGGATGATCGAttgtaaaatttacaaaacacCGTAACT
TGACTCGTCCGTTATTTTAAGTTCATTGGttatttattcttttaaaaatc
atcTGATAGCGTCTCATTCcactaatttaaaaaaataccacTCGACCTCC
CGTGTGACGAACGCTTAAAATTGCTGCTCTGTACAACTTCAGTAAACTCT
CGCCCTAATTCGATAGCTTCAATAATTCGAGCTTATCCTCAGTTACTTGG
AAAAACCTTCGTGGAATGTCTTCTACAATTACAATTTCTAtgtactttaa
tcggattaaatttcgcgaaatctTTTGGATTAAAATTCCCGAGTCAGggg
tttcaaaaatttcgcgtggatttaatttcgcgaatgagtcTGAAAAACAG
CTGAAAATGGCATTTTTGGGCACAAATAGAGAGTTTTGACTAGTTCCTCA
ATCCAAAATGTAATGTTaaatatttcgcgtggatttaatttcgcgagtca
gtaATCTCACACGTTTTCACGAGTCTTAATTTCGCGAAagtggcaaaaat
tcgcgaaaacgcgaaatttaatctcgcaaaaattaatccgattaaagtac
ttcaaataattttgattctccTTTGGGGCTCGAATTAGCGAAAGTGTGCG
CGTTGTTTAAACTGGGTGGTGCTGTCAATTTTTCGTCAGGGTGTGCAATT
CACcttaatttcaaaacattaaatGAGAAGTTTAAGCTTTCATGCCATAG
TGATTAGCCATTGTAATAAATTCAAAAGTACATTCAAAATTATATTCTTT
CCAAACAAAATTGACTACTTCAAAAACACTTTTAGACAGCAAATATTTTT
GTGACTGAAATGCTATTACATGATTACTGTAAATTGCGTTCTCCTTTTGT
AATCATTACCAATTTGCCATTCTTATCTTTTTTTGGTCAGGTAACTTTGT
CGCATCTTTTAATACCAAACCAAAcattaatattttcaaagattttgagc
tCAATTGAAGGaaacttattcaaaattttctatttctatcaATCTGAGTC
TAAGAATACAGCAAAAATTTGCTGTCGGTCAAATCCAAACTAACGCCTTT
TGAAATTCCCCTGAAAACTACGAGGACATTATTGTGAAAATCTAGTTCAA
AACCCAGAACTTTCATTTTAATCGTATCGAATTTCGAGTCAAAAAATCGC
AAGATCCCTTGATCATTTCTGAAGTTGGAGTTTCGAAGAATTTAGTGTGA
GTTTAATTTTCACAAATGAGTCTGTAAGTGGTTTTAAAAGCGGTTATTTT
TAGCCCCATACAATTATCTAGAGCAGTTTGCATCAAaaatgttttgagtg
tattgatttcaaaagtcaactgtcactgttgaatttattttgcgaaaaaa
tgttttttttgtgcCTAAACGTTTGAAAGGGAAACAATGGATAGGGACAA
cgaatattttttattaaaactttgaaaacctcTCCTGGATAAACCAGTCA
ACAACCAGTATGCATGGTTGCAATTTTATCCCTCAATTTGGTCCCCGCGG
AATGTTATCCCTAAAAATACGTTTATGTAAATCGCCAAAACTTCTCAATT
AAGTCGCACCCTACGCTGCGAAGCACTGCGAGGAAATTAACCGAGTTCGG
TAAAACCATTTGAACGATTTTGTAGTTGATGAAGGAAATACATTTCTGTG
AAGTTACGGTAAATGGTCACGTGATAGAATTAATGCTGCTTTTTCTTCCG
ACATCTCATAAGATAGGTCACTTCCCGTTGAataagagaaagattcgaat
ctTGGTGAAAATTCCACACACTGGGTTTGTAAGTCAAATAGTGCCGTGTG
CCTGGCCCCGCTATCTCTGAGACGAAATCATTAAAAAACGATCCTTTTAT
CTAAAAGTCTTTGAATCGGAATATTTCCGAGGTTGGAGGTCGAAGAATTT
CTTGAAATACTTAACTGAGCTATTCGGCAATTTATGCGGTTCATGGCGTC
ATTTTGAAATCAGAAAAATAATGTTAAAAGCCTTCAGATTTTTTAGTCTT
TTTTTCGCTGTCAAAATGACGTCATTGATCTCATGAAAAGTAACGTTTGT
TGTGCTAATTTGGTCAGGAATGGAATATCGAAAGTTAAACGGCTACAGTA
CAGTGATGAAAAGTAAAGATAAGGGTGTAAAAATAATGACTTGCGAAATT
TCCATATTCAAGTATTAGTTCATCGAGAAAATGACGGTGGCATTTCTGCT
TTTCCTTTCCTTTGTCTCAGTCTAAGAATGTTCACTAGCGATCGAAATGC
TTCGTTTTTGGAGAGCTCGAGTAGCCTCTCAGGGCGGATAGGATAGAGtg
cctttatatttttttttataatttttttttgtatttttttgtcataattt
tcTCGGAAAATATAAC
Run BLAST on NCBI

transcript from alignment at sc0000023:505583..509198

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002925 ID=TCONS_00002925|Name=TCONS_00002925|organism=Clytia hemisphaerica|type=transcript|length=3616bp|location=Sequence derived from alignment at sc0000023:505583..509198 (Clytia hemisphaerica)
GTTATATTTTCCGAgaaaattatgacaaaaaaatacaaaaaaaaattata aaaaaaaatataaaggcaCTCTATCCTATCCGCCCTGAGAGGCTACTCGA GCTCTCCAAAAACGAAGCATTTCGATCGCTAGTGAACATTCTTAGACTGA GACAAAGGAAAGGAAAAGCAGAAATGCCACCGTCATTTTCTCGATGAACT AATACTTGAATATGGAAATTTCGCAAGTCATTATTTTTACACCCTTATCT TTACTTTTCATCACTGTACTGTAGCCGTTTAACTTTCGATATTCCATTCC TGACCAAATTAGCACAACAAACGTTACTTTTCATGAGATCAATGACGTCA TTTTGACAGCGAAAAAAAGACTAAAAAATCTGAAGGCTTTTAACATTATT TTTCTGATTTCAAAATGACGCCATGAACCGCATAAATTGCCGAATAGCTC AGTTAAGTATTTCAAGAAATTCTTCGACCTCCAACCTCGGAAATATTCCG ATTCAAAGACTTTTAGATAAAAGGATCGTTTTTTAATGATTTCGTCTCAG AGATAGCGGGGCCAGGCACACGGCACTATTTGACTTACAAACCCAGTGTG TGGAATTTTCACCAagattcgaatctttctcttatTCAACGGGAAGTGAC CTATCTTATGAGATGTCGGAAGAAAAAGCAGCATTAATTCTATCACGTGA CCATTTACCGTAACTTCACAGAAATGTATTTCCTTCATCAACTACAAAAT CGTTCAAATGGTTTTACCGAACTCGGTTAATTTCCTCGCAGTGCTTCGCA GCGTAGGGTGCGACTTAATTGAGAAGTTTTGGCGATTTACATAAACGTAT TTTTAGGGATAACATTCCGCGGGGACCAAATTGAGGGATAAAATTGCAAC CATGCATACTGGTTGTTGACTGGTTTATCCAGGAgaggttttcaaagttt taataaaaaatattcgTTGTCCCTATCCATTGTTTCCCTTTCAAACGTTT AGgcacaaaaaaaacattttttcgcaaaataaattcaacagtgacagttg acttttgaaatcaatacactcaaaacatttTTGATGCAAACTGCTCTAGA TAATTGTATGGGGCTAAAAATAACCGCTTTTAAAACCACTTACAGACTCA TTTGTGAAAATTAAACTCACACTAAATTCTTCGAAACTCCAACTTCAGAA ATGATCAAGGGATCTTGCGATTTTTTGACTCGAAATTCGATACGATTAAA ATGAAAGTTCTGGGTTTTGAACTAGATTTTCACAATAATGTCCTCGTAGT TTTCAGGGGAATTTCAAAAGGCGTTAGTTTGGATTTGACCGACAGCAAAT TTTTGCTGTATTCTTAGACTCAGATtgatagaaatagaaaattttgaata agtttCCTTCAATTGagctcaaaatctttgaaaatattaatgTTTGGTTT GGTATTAAAAGATGCGACAAAGTTACCTGACCAAAAAAAGATAAGAATGG CAAATTGGTAATGATTACAAAAGGAGAACGCAATTTACAGTAATCATGTA ATAGCATTTCAGTCACAAAAATATTTGCTGTCTAAAAGTGTTTTTGAAGT AGTCAATTTTGTTTGGAAAGAATATAATTTTGAATGTACTTTTGAATTTA TTACAATGGCTAATCACTATGGCATGAAAGCTTAAACTTCTCatttaatg ttttgaaattaagGTGAATTGCACACCCTGACGAAAAATTGACAGCACCA CCCAGTTTAAACAACGCGCACACTTTCGCTAATTCGAGCCCCAAAggaga atcaaaattatttgaagtactttaatcggattaatttttgcgagattaaa tttcgcgttttcgcgaatttttgccactTTCGCGAAATTAAGACTCGTGA AAACGTGTGAGATtactgactcgcgaaattaaatccacgcgaaatatttA ACATTACATTTTGGATTGAGGAACTAGTCAAAACTCTCTATTTGTGCCCA AAAATGCCATTTTCAGCTGTTTTTCAgactcattcgcgaaattaaatcca cgcgaaatttttgaaacccCTGACTCGGGAATTTTAATCCAAAagatttc gcgaaatttaatccgattaaagtacaTAGAAATTGTAATTGTAGAAGACA TTCCACGAAGGTTTTTCCAAGTAACTGAGGATAAGCTCGAATTATTGAAG CTATCGAATTAGGGCGAGAGTTTACTGAAGTTGTACAGAGCAGCAATTTT AAGCGTTCGTCACACGGGAGGTCGAgtggtatttttttaaattagtgGAA TGAGACGCTATCAgatgatttttaaaagaataaataaCCAATGAACTTAA AATAACGGACGAGTCAAGTTACGgtgttttgtaaattttacaaTCGATCA TCCTACTACAACGTTGTTTGAACGTTCATCTAGCGTCCATGATGTCCATA AAACGTAAAGATGAACGTTGACTTGAAACAAAGTTCTGTGCAGCTAATTA ACATGCGTCTTcccactaattaatttttcaaaaactttccactcaggaca ttcttattccgaTCCCCCCCCCTCACTTATGAATAtttaggaaaatattt ttgagagtTTTCTCTTTTGTCTGTATTggcctttttttcaaaaatcttca aaccAGGAGATTAAGTTTTTAAAGTTTCTCCACCCATCCAATCACCCcat ttattaggtacccgagagtaggaaAAACTTTGATTAGAGTTGTAAAAATC GGCCATAATTCTAACCACCAAAACAAATTCTCACTAATTCGAACTTGAAT GTTCGAGTTCTAAAGAGGTGCGAATTATGAAGATTTACGAACGGGAGCTA AATTAAGCAGTATTTGAATTATAAAAGCTCCAATTAGTGAGAGTCCAtta aacagttttttttaaactcatatgaaaatacatgtttttttataagcaag tgtctgtccctatatcaggctcgcattatgcttagcattctattgttctc aaacaatagagccattgtttaggtaacaaaaactgagcctgtatatgctt ataagcgttatgcttataaaagcaaaaacatGTATTTAAGATCTCTGGGG AAATGTGTGAAAAAGATTCAGAAAGACTCAGCAAAATATAATTCGATAAA CGGCTTTTAAATTGTTGACATTTGGACAATTCCCAAAAGGGGAGgggttt caaaaaaaagttttcaaaaatctgaaaGAGGGGAAAGCAACGGACGCTAA CCAGACATGAAGGCTTTCTTGAATTTCGTGATAAATCGCTTGAATTAGGA AGCAAAGTGCTCTGTACAACCTATTAGAGGGAACGCCTTTTTCGCGATAA TGGGGAGAGCCAACTTTTAGGTAAAACCTTTTGAGCGAAAATAAAGTTTG ATGAAGGAAATAAACACCTGTGCATAAAGTAAATGGTCACAGAGAAAGTT CAAACGTTGGTGAAAAATTCCATCGAATGAATTTGTATTCAATATGTACA TCCTTTCCCAGGTCCCATCACAAAATCATCAGAAACAGACCCTTTCTTAA AGTTTCTGAACCTGAAGATTTCGGAGGAAGATTCACGAAAGAAAATTCCC AAAATACCGTCCGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001598XLOC_001598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002925-exon-sc0000023-1491911889:505583..509198TCONS_00002925-exon-sc0000023-1491911889:505583..509198Clytia hemisphaericaexon
TCONS_00002925-exon-sc0000023-1510915933:505583..509198TCONS_00002925-exon-sc0000023-1510915933:505583..509198Clytia hemisphaericaexon
TCONS_00002925-exon-sc0000023-1575043694:505583..509198TCONS_00002925-exon-sc0000023-1575043694:505583..509198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:505583..509198 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.698758 0.579661 0.377074 0.548162 2.24407 1.46236 2.78667 3.36358 2.67412 1.89501 2.86247 2.67384 1.9844 2.77184 1.50871 1.52533 1.53682 1.5105 1.26645 1.23628 2.19221 2.83692 1.72014 1.50626 2.7391 3.04126 1.54101 1.84216 0.946991 0.844769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top