TCONS_00002887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002887
Unique NameTCONS_00002887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002887 ID=TCONS_00002887|Name=TCONS_00002887|organism=Clytia hemisphaerica|type=transcript|length=1370bp
GTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGATGCAACAGACAGG
GATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATGGCATCCTGACAA
AAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAGATTTAGGCGCTG
CCTATGAGGTACTCTCAGACGcagacaaaagaaaaacatatgaTAAGCAT
GGAGAAGAAGGCGTCCAGAAAATGGGCGGCGGAGGTGGTGATGGATTTGA
CCCCTTTGAATCATTTTTTGGTGGATTCGGAGGATTCGGTTTTGGCGGTG
GAAATAAACAAAGAGGCCATGGTGAAATTCCCAAAGGTGGAAATATTGTT
ATGGATCTTGAAGTCACATTAGAAGAATTATATACTGGAGATTTTGTCGA
GGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCGGTACTCGACGTT
GCAACTGTCGAATGGAGATGAGGACACATCAATTAGGACCTGGACGTTTC
CAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAATAAACGATTCAT
TATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAGGAATGCAAGACG
GTCAAGAATATCCTTTCGTGTCTGAAGGAGAACCACATATTGATGGAGAG
CCAGgagatttgatttttaaaattaaagaaCTAAAGCATAAAACGTTCGA
AAGAAGGGGAGATGATTTGTTCACTAACATCACTATCAGTTTAGTTGACG
CCTTGAACGGTTTCGATATGGAATTCAAACATCTAGATGGTCACGTGGTC
AAAGTTCACCGCGAAAAGATCACATGGCCTGGTGCCAAAATCAAGAAGAA
GGGAGAAGGGATGCCCAATTATCATAATAATTTGGACAAGGGTGTCTTAG
TGATCACTTTCGATGTTGATTTCCCAAAAGGAGAATTGGCAGAGGAACAA
AAAGAAGcaATAAAAACGATATTGAATCAAGATTCGAAACAAAAGATATA
CAATGGATTACAAGTATGATAGATAGGAAGCAATTGACATTTATTATTTC
ATAGatttatattgatgtatacatatttaactttttttcgaatttctaGG
CCTTTTACAAAGTTCAAACGTTTTATAgaaattaattttggaaaattcag
aATTTCATTGCGTTGTTACAAACTTCGAAAAACAGCTTTTAAaccttaat
tttcatttttgatacaggtgagaaatgtttttgagaaaattaagaTTCTT
TATAATGTTTATTCCAgttttatttgttgtttttcttgtaAACTTTATTG
AATAAGagcaaagttttttgaaaatgaatttatttaagaaaggttACGAT
ACAAGAAAATGCTTGTTGCG
Run BLAST on NCBI

transcript from alignment at sc0000023:736979..742463-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002887 ID=TCONS_00002887|Name=TCONS_00002887|organism=Clytia hemisphaerica|type=transcript|length=5485bp|location=Sequence derived from alignment at sc0000023:736979..742463- (Clytia hemisphaerica)
GTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGATGCAACAGACAGG
GATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATGGCATCCTGACAA
AAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAGATTTAGGCGCTG
CCTATGAGGTAAATTTTAATGAACACATCATGAGACAAGTGTTGATAATG
TGTTCACCAAGTCTATTATTTTAAGATGTTAGGTTTTAAAGCTTTAAAAC
TTGTAAAGTTGACTGAAAGTTTGAAAATATTTTTCTACAATGAATGCAAA
TAATATTCTCTGACAGTCCAGGATAACTTTCAATGATTGCATTAATGTCT
GATATCACTCCTAATAAGATACTTTATTATAAACACTCATGATCACTGGA
GAAAATATAATAAAAGTGTCCAGTTAAAGCTTGTCCACTATAATCTGGGT
ACATACATATTTTAGGGATTTTTTGCTACCAGAAAACAGAATAATTTCTT
CAAGAAAAAGAATTAGCCGTGGAAAAAGGTTTAAAAAGTAAAGAAAGTCT
ATTAAGTATTCAATATTCTAGCACTAGTCTAAAGCAAAACTTAAACCCTC
ACTTCCACCACGACTCTGCCCTGGACCAGCTTTTACTCATCATTACCTAG
ATGATCATAGAAGCAAGAACTAGACTTACGATTGACCTGAGTTTTACTTT
ATAATTCTAAAATCACTTATCTTAGGTACTCTCAGACGCAGACAAAAGAA
AAACATATGATAAGCATGGAGAAGAAGGCGTCCAGAAAATGGGCGGCGGA
GGTGGTGATGGATTTGACCCCTTTGAATCGTATGTCTTATTTCTTTTTCA
GATGTTTTTTGTTTTGTTTTTGACATTACTTTAATTAGTACTTTCAAGGG
ATAATCACTATTTAAGATTTTTTTGGCCTGGAGACACTTTCTGTTCTTTG
TCACTGCATTTTGTCAGTTTTTAGATTACTTCAAAATAATGTTCTTTAAA
GGGATGATCAGAATTTAAGATTTGGAGCAATACTGGCAATATCTTTATTT
TCATTTTATTTTTACCTTTTCAAAAATAAATAGACATCTGATTTTCAAAA
GGTACCTGTCAGCCAAAATTTTCAAGCTATATTGTTTCGGTGAGAGGTAG
TTTATGCACTTGGTATGTTTATGATCTAAGGTATAAAGTTGAAAGTTATT
TAAAACATTTCCTCCCTTGATTGGCTATAATTTTTCTTTAAATCAGATTT
TTTGGTGGATTCGGAGGATTCGGTTTTGGCGGTGGAAATAAACAAAGAGG
CCATGGTGAAATTCCCAAAGGTGGAAATATTGTTATGGATCTTGAAGTCA
CATTAGAAGAATTATATACTGGAGATTTTGTCGAGGTAAATTATCTACAG
TTCTATTAATCCAATTAGCTTTAAAAAGTTTTTTCAACAGCCAGACTTTT
CCACTAATTTAATGCTGAATTTTAGTCGTAACTGGTCGTAATAATATTTT
AAGACTATTGATATTCTAGGAAGAACCAGAATTGACACATTTGTGATTGT
TTCGTCTTAAAAAACTAGTTCCATTCAAATCTCAAAGCTCTTTGCTTTTC
TTTTATATAGTAGTGACCAACTACAACCTTTCACTTTTCTCCTTTTTCGC
AGGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCGGTACTCGACGT
TGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGACCTGGACGTTT
CCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAATAAACGATTCA
TTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAGGAATGCAAGAC
GGTCAAGAATATCCTTTCGTGTCTGAAGGTGAGTTGTACCAACATTTTTT
GGACCTACCCCGATGGTGGGGTGGAGGTCCTATAAATTAATCTTTATCCG
TTTGTTCGTTCGTTCGCTCGCTCGCTCGCTCGTTATTAGCTAACCTCATG
ATTGGCTCATTAGTTTTTTCTGATTTTTTTTCTCAAAAAACGCATGTTTA
TCCATAAGAATCACTATTAGTAATTTTGCTCACAAAGTCTCGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ACTTGTTGTATTCTAACTTCAACTTTTTCTGGGGACCTTTGTACGTAGAG
GGGGTAAGCAATATTGAAACACTGGGAGGATGGAAATGTAGGGGGTCTAA
TAAAATGGTGGCTTCGACACAGAGCAAGTTTCCTTCGAAACAGATTTTCT
TTGAAAGAGGGGCGGGTAAAGTTTCATTACAGATAGAGCTTTCATACCCC
TCTGCAATCTATGCCACAGTCAACTTTGATTATCGATGGTTTCTAATGGC
AATGTGAGTCAGGCTATCAATATATTAGAAAAAGGTTGCTTAACTCACAT
TGAGTTATAGTTGGGTTCTATGAATTTGAGCGCTGTGAATCTATGCTATG
TTTTTTTCTATTATTCCAGGAGAACCACATATTGATGGAGAGCCAGGAGA
TTTGATTTTTAAAATTAAAGAACTAAAGTAAGTAAAGATTCATGAAAAAC
CAAACATTTTTACCAAAAATTTTGTGCCTAATAAAGAGGGATTTGGTTTT
AACGGCTGAAACTCCTCATTTCAGAGGGTCCCAAGTGAGTGTTTTGATAG
CTAAAAATATTTGAAAAAGTTCATAAAAGTTAGTTTAGTACTTTAACTCT
CATAAGTTTGTTCAATTCATAGACATAAAACATTCGAAGGAAGGAAGGTT
CGAAATCAGTTTAGTACTAAACTCTCATAAATTTGCTCAATTTCTAGACA
TAAAACGTTCGAAATCAGTTTAGTACTAAACTCTCATAAATTTGTTCAAT
TTCTAGACATAAAACGTTCGAAATCAGTTTAGTACTAAAATCTCATAAAT
TTGTTCAATTTCTAGGCATAAAACGTTCGAAAGAAGGGGAGATGATTTGT
TCACTAACATCACTATCAGTTTAGTTGACGCCTTGAACGGTTTCGATATG
GAATTCAAACATCTAGATGGTCACGTGGTCAAAGTTCACCGCGAAAAGAT
CACATGGCCTGGTGCCAAAATCAAGAAGAAGGGAGAAGGGATGCCCAATT
ATCATAATAATTTGGACAAGGGTGTCTTAGTGATCACTTTCGATGTTGAT
TTCCCAAAAGGAGAATTGGCAGAGGAACAAAAAGAAGGTGAGAAATCTGG
TATAATCTCTGATAATTATGATTCTAGGGTTTTAATCAATAAGGTATATA
AAGATCTCCTATGAATCCCCTATGTAAAGCGCTTGATTGGAAGTAACACT
TGCAGCTAGAATTCGAAAAATGTGAAACACAAAACAAAGAAAGTGCTAGA
TTCAATCCGTTATCCAAAATGCGGCGCAAATTTTTTCTTTGCCTAGAAAA
GGCTGAAGATACCTGGTAGGTGTGAAGTTGTTTGAAGAGGCGTTGTAATC
CTTTTGGCAACCTTTGCCCTAAAAAAGGAAAGGCTGAAGATATTTCTCTA
GCCTTCAACTTGACAACTTGAAGCTCGGTTTCTGATTAATTTCAGAAATA
ATTATCGCTCTTTTGATAGTTTCCCTTCGTTGGTTTTCTTCCTCAAAATT
CTATAATAAAGGTTGTGGTTGTAAGTTTTAAAGCTCTAGAAAATTGAGCT
TTTTCTGTATCTGGCTGATTTCGATTTGATTTGATTTCTTTTTTTTTTTT
AATTTCAGCAATAAAAACGATATTGAATCAAGATTCGAAACAAAAGATAT
ACAATGGATTACAAGTATGATAGATAGGAAGCAATTGACATTTATTATTT
CATAGGTAGGATTTAAAAAGGGCTTTATATTTTATCGTCAGAAACTTTGA
GGCAAAGCCAAAATGGCACTTTGATGTAAACTTATCCTTGGCGGAATTTA
TTTTTGCGATGATTAGACATTTCTATTGGATCGCCATCGAGTCTCGATTT
TCAGCGAATTTTGTCTTAAAAATACACAAAACGTATTTTCCGTTTGATAA
CAGTTTCCACGCCTATAGCATAAGTGTGTGTGTTCTCAGACCTGGAGTGG
CCCAAAATTAAAATCCCATTTCTAGCTCAAATGGCTATGATATGTTGGGA
AAAATTTCTATTTTATGTTTTTCGTCAAATTTTTTCATGAATGTATTTTT
TTGTTCGTTCGATTTTTAGATTTATATTGATGTATACATATTTAACTTTT
TTTCGAATTTCTAGGCCTTTTACAAAGTTCAAACGTTTTATAGAAATTAA
TTTTGGAAAATTCAGAATTTCATTGCGTTGTTACAAACTTCGAAAAACAG
CTTTTAAACCTTAATTTTCATTTTTGATACAGGTGAGAAATGTTTTTGAG
AAAATTAAGATTCTTTATAATGTTTATTCCAGTTTTATTTGTTGTTTTTC
TTGTAAACTTTATTGAATAAGAGCAAAGTTTTTTGAAAATGAATTTATTT
AAGAAAGGTTACGATACAAGAAAATGCTTGTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001568XLOC_001568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002887-exon-sc0000023-1575043694:742306..742463TCONS_00002887-exon-sc0000023-1575043694:742306..742463Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1575043694:741635..741738TCONS_00002887-exon-sc0000023-1575043694:741635..741738Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1575043694:741079..741217TCONS_00002887-exon-sc0000023-1575043694:741079..741217Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1575043694:740586..740811TCONS_00002887-exon-sc0000023-1575043694:740586..740811Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1575043694:738937..738994TCONS_00002887-exon-sc0000023-1575043694:738937..738994Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1575043694:738277..738548TCONS_00002887-exon-sc0000023-1575043694:738277..738548Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1575043694:737659..737755TCONS_00002887-exon-sc0000023-1575043694:737659..737755Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1575043694:736979..737294TCONS_00002887-exon-sc0000023-1575043694:736979..737294Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:742306..742463TCONS_00002887-exon-sc0000023-1510915933:742306..742463Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:741635..741738TCONS_00002887-exon-sc0000023-1510915933:741635..741738Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:741079..741217TCONS_00002887-exon-sc0000023-1510915933:741079..741217Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:740586..740811TCONS_00002887-exon-sc0000023-1510915933:740586..740811Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:738937..738994TCONS_00002887-exon-sc0000023-1510915933:738937..738994Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:738277..738548TCONS_00002887-exon-sc0000023-1510915933:738277..738548Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:737659..737755TCONS_00002887-exon-sc0000023-1510915933:737659..737755Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1510915933:736979..737294TCONS_00002887-exon-sc0000023-1510915933:736979..737294Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:742306..742463TCONS_00002887-exon-sc0000023-1491911889:742306..742463Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:741635..741738TCONS_00002887-exon-sc0000023-1491911889:741635..741738Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:741079..741217TCONS_00002887-exon-sc0000023-1491911889:741079..741217Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:740586..740811TCONS_00002887-exon-sc0000023-1491911889:740586..740811Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:738937..738994TCONS_00002887-exon-sc0000023-1491911889:738937..738994Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:738277..738548TCONS_00002887-exon-sc0000023-1491911889:738277..738548Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:737659..737755TCONS_00002887-exon-sc0000023-1491911889:737659..737755Clytia hemisphaericaexon
TCONS_00002887-exon-sc0000023-1491911889:736979..737294TCONS_00002887-exon-sc0000023-1491911889:736979..737294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:736979..742463 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.9317	76.7711	14.0475	7.58658	11.7973	20.7127	25.3814	28.8238	54.6202	64.7859	44.0719	38.5955	47.6654	36.8104	44.7553	52.4471	75.9588	68.6835	13.4704	28.0158	30.5301	33.8141	68.7773	69.1723	35.9103	15.5751	40.9004	29.4807	54.0907	46.8866
Blast
[Close]
BLAST of TCONS_00002887 vs. Swiss-Prot (Human)
Match: DJB11 (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 1.212e-143
Identity = 205/337 (60.83%), Postives = 255/337 (75.67%), Query Frame = 3 
Query:    3 RDFYKILGVRKDATDRDIKKAYRKLAMKWHPDKNPDDPKAQDKFQDLGAAYEVLSDADKRKTYDKHGEEGVQKMXXXXXXXXXXXXXXXXXXXXXXXXXXNKQRGHGEIPKGGNIVMDLEVTLEELYTGDFVEVLRAKPFAETTSGTRRCNCRMEMRTHQLGPGRFQMMQEEVCDECPNKRFIIKDQLLEIEIEQGMQDGQEYPFVSEGEPHIDGEPGDLIFKIKELKHKTFERRGDDLFTNITISLVDALNGFDMEFKHLDGHVVKVHREKITWPGAKIKKKGEGMPNYHNNLDKGVLVITFDVDFPKGELAEEQKEAIKTILNQDSKQKIYNGLQ 1013
            RDFYKILGV + A+ +DIKKAYRKLA++ HPD+NPDDP+AQ+KFQDLGAAYEVLSD++KRK YD +GEEG++                  GF   G      +     IP+G +I++DLEVTLEE+Y G+FVEV+R KP A    G R+CNCR EMRT QLGPGRFQM QE VCDECPN + + +++ LE+EIE G++DG EYPF+ EGEPH+DGEPGDL F+IK +KH  FERRGDDL+TN+TISLV++L GF+M+  HLDGH V + R+KIT PGAK+ KKGEG+PN+ NN  KG L+ITFDVDFPK +L EE +E IK +L Q S QK+YNGLQ
Sbjct:   24 RDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDR----NIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRDKITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAREGIKQLLKQGSVQKVYNGLQ 356
The following BLAST results are available for this feature:
BLAST of TCONS_00002887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DJB111.212e-14360.83DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
back to top