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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002826 ID=TCONS_00002826|Name=TCONS_00002826|organism=Clytia hemisphaerica|type=transcript|length=1320bp CTCGTTTGGAAGAGAGATTTCAtaatatatttttagttttttttgtcgTG GAATTATTCTAGGGAGATcattatgaaaatatttcatttgTTTGTCTACT TGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCC ACAGTTGATGACATTGAGaaCGATGTCTTGATGTCTAAAAGCCGTCATTA cttttgcaaaaatgttttacaaAATCGTGACGGAAAAGACGGGAGAGATG GAAGGGATGGGAGAGATGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCT ACAGGTCGAGCTGGGAAGGATTGCGATCAACAAATGCAATGGGAACGAAT TCAACATAGACCACCAAGCAATGACGGAACTCAAGGATTAACTGGAGAAA AAGGTGATAAAGGTGCTCCTGGAAAAGATGGTGCTCATGGTACCCCTGGT TTGCCTGGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAA AGGTTCTCCTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTA TTCAAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCT GGCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAG AGTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAA CTCGTGGCTTGATAAAAGAATGCAGCTTTGTTAAGAAGTACCCACATACA TATGTTAAAGTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGG AAAAAGATGGTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTC CTATTGGTCTTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTG ACTGGATCGTGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCA TGTTCAAAATGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAA CTAATATTATCATTGAAGAAGTTATTCCACCACAAGCTTAAAGATGTAAC AgtttttatttctaaatttaaaaaactcTACAACTCAcgctctaattcga ttttcatcgaataagggagcgtatcgaatagtagagcgtcgtttatgagt gTTCCTTTTTGACGGaggctttcaatattatcgaataatggagcgtatga ataatagaacgtcgaattagagtgtcaactgtatattcatatttacataa atactctaccattttattttattcacaGTCCAATTAAAAAGCTGCAGAAG AAACCGAAGAAATATTTACC Run BLAST on NCBI transcript from alignment at sc0000023:772285..780395+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002826 ID=TCONS_00002826|Name=TCONS_00002826|organism=Clytia hemisphaerica|type=transcript|length=8111bp|location=Sequence derived from alignment at sc0000023:772285..780395+ (Clytia hemisphaerica) CTCGTTTGGAAGAGAGATTTCAtaatatatttttagttttttttgtcgTG
GAATTATTCTAGGGAGATcattatgaaaatatttcatttgTTTGTCTACT
TGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCC
ACAGTTGATGACATTGAGGTTGGTGTctccattatttttttatttttact
tattcCTTGGTACCTACAACCATGAActaatgtttgagaaaaacactgga
aaatgtttggaaaaccaAGCGGCAATGTTGAGTGCAAACGTCCCACCGAC
CTTTCCACTGCCCTTcaagggggggtttcatggttggcgggggagcggaa
tcggcccttttttcggacggagtggcggaatttggcgaaaattttgacgg
aattacggaaattaggttctctgacggagacggaaaattagacaatttta
gtgcggaaaaacggaatttagcaaaaaaatttgcggaatttcggaattNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgaattttcggtgacggaattttggttcaatttaagacggtttgacgga
aattggagaaaaaattgacggaattgcggaatcgggtaccccctgaaacc
ctcCCCTAGTAAAGCAActagatttttaaagaaatatataCACAAAAGAT
AGCACAATAAACACAGAAGGCCTCAGATACTTTTTATCTTCCAATGCATA
ATCCCTTGGAACAACGTTTCAACCAACTCTGAAATTCAttggaaaaaaat
cttcttttaaatcatgaacatataaacgactggacatccatctcctctgt
atttttgaagataacactgctagcttcgttgccgcctcgttaaaatcatc
aaatgaaacaataaattctgatggtatacctcttgggaataccttctcag
gcattttaaggcctgtccaaattttccgtaatttttaaacaccaatagca
ctcgTCAAGAGGTGTTCATTTATAcgtttttggaagcgtattagggtgta
gaatatgaaaagtgctgttcgataattcttttgtttgcctaaataaagat
acatggataaataatgcaaaaatgtaaaaatgctgacgtcagcaaaactt
atttcttaaataacttttgattggcttaattctagatgctgaaattttgg
agaatgcaagagaatattgaaaagcacattttggatcaaagttttttttt
gaaatttgatgacgtcagcaaaaataagtaaaaaacgcatttttgcgaaa
atatgctgacgtcagcaaaatttcaaaatatttttgatttaaaatgtgCC
TATTCATAATATCCtactttggttaaaatttcagcatctaaagttaagcc
aatcaaaacttattcaaaaaataagttttgctgacgtcagcatttttaca
ttttttgcaatatttattcatatatctttatttaggcaagcaaaacaatt
attgaacagcacttttcatattctacacTNcaaaaaggtatgaatgaaca
cctcttggcgagtgctattggtgtttaaaaattacagaaaatttggacat
gccttaaaaTGCCTGANNNNNNNCAaaatttcgacaaaagtctttgttgt
tctacttttctcaagtcttttatctatatcataacaaagataacagaggc
aaaatcatcgtcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGagttga
aaaagttgataaaatatattgcaaactcgtgaaaaaatttgaaaataatt
tttttgtgcattaggagtaatgttcaagctctatcaatcatttaactaaa
ataattcaaagaaataaaattacgacggaatattgtcggattttttatag
caattttgaaatacaggcggcaacgaagctcgcttcaaagagacaataaa
agatagatgtccagtcgtttatatgttcatgtttAAATACATAGCATTTG
GATCATTAAGCCTCTtttcacccctgtatcacagacccggtggcATCCCA
CTCAGTGGAATTAAAAGATAAATACAGTACAGACTTAACTTAACTTTGCC
CAAAGTTTGGCTATCTCATTCTGATCCCATATTACAGATACATGGGTGGC
TTTGATTGTGTATGGATAAATGCCTAAGGCTTGTTAAGAATATCCCAGCG
TCGGAGttaaactaaataaaaaatcatggcTTTAAGCCCCTTTTAAGACA
AAATGCATgtaaattatgatttttttagaaCGATGTCTTGATGTCTAAAA
GCCGTCATTActtttgcaaaaatgttttacaaAATCGTGACGGAAAAGAC
GGGAGAGATGGTGAGTAAATCCTTCATGGTAAATCCTTGTGCTTTTCTTA
GTTTTCCCCACACAATCAGGCCTAACTCCAAATCGACTCGCTAGTTTGAT
TCAAACGGGAAAGACTGCAGAATTTTTTCACCCCGCTGAGGGGAAAGAAT
CTACCGGGACACTTACACAGAGGTAAATCTGTCATTCCATCGCCTGTACA
ATTTGAATACTGCTCCATTTTGATTAAATATTACGTTGAGAAAAATGCTT
CGATGGAAAGAAAACTTGGGGGATTTAACGaattatgttaaaaaaactgc
atctaaaaaaaacctttcaacCATCTATAATATCAAATTTCTgtgataaa
attattttcaaaacagttTGAAATTACTGTTTAGGAAGGGATGGGAGAGA
TGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCTACAGGTCGAGCTGGGA
AGGATTGCGATCAACAAATGCAATGGGAACGAATTCAACATAGACCACCA
AGCAATGACGGAACTCAAGGATTAACTGGAGAAAAAGGTGATAAAGGTGC
TCCTGGAAAAGATGGTGCTCATGGTACCCCTGGTAAGAATCACTTGTAAG
ATTGTGTTTATTGAGACTATTCAGTTTACGTTCTCTATGACTCTGTCGAT
ACGCTCCATGATGCtaaaagtccccgtcaacaagaaactctaataaacga
cgctctactattcggtaggctcccttattcgatgaaaatccaattcccct
tgaaaattgtTCTACAGAGCGCTTACTAGTAATCAAGTCGTGCAAAGAAG
TAACTAGTAAATACTGTTCATGTTCCAGATGCAAGCAATTTTACACAATT
GACGAAAACATCACTTTTGACCCCTCAACATTCATTGTCTTACGATATAT
TGGACGAAAAATCAcgtagaaatatttgaaaagcttcaagaaaaaacaat
tgcTAAAATAGGTCAAGCAATTTATAGAACAGGATCAAATCTTCTTTAAT
CTTCTCTTTATGAATTAATCCAGAATATTGACCAAATGCCTGATTTATAT
GCGCCAACCTTTATCTTTTGACCAAGTTTTAATTCTTTATAGGTTTGCCT
GGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAAAGGTAA
GCTTCCCTCAGCTTCCTTCAGTCAGTTGAGACGTTGGAACAAAAGTAAAA
TATATAAAGACCTCCAAGTTTAAATATTTTTCTCAACATCATATAATATG
GCCAAGAATTATTTTCTTAAAATTCTATTGTTAACAAATCCATGAGTTAA
TTTTTCGGGgggggggggggggtactggggcaaaaagaggtacacgaatg
tcagggtaccttttttttcttcccaggtagaaaatattgaagaaaatttg
gaatttcagtGCCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagt
tttcaaaaaacaacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAG
AACACCCCCGTTAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATA
TTTCCATACCGGAATGAATGAGAGATTACTTTTACAATACAATGCAATAT
AATTGAACAAAACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTC
CTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGT
AAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTAAAACTGCTCTG
TCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGGTAAACcattaa
ataaaatttgaaatatgattttcaATTGATATCTTAATTCTAACTCTAAG
ATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTCCTTAGGACCTC
CTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTGGCAAAAATGGA
GCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGAGTAGGAAATTG
GAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAACTCGTGGCTTGA
TAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcatcaaaaaatata
aatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAACCCCCCAATGG
TGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTAATGGgttatta
aagggacataacagtacttgcgaaatttgtaaacaaactgtatgcagcgg
ataaaaaatcaaaccaaatatggctaattttgattgttcaattattttac
aagtttgttttttggacacgtgattttaattgttaattttaatgacacgt
ggttcgcgcaatgtttacattttattactTTAATGTCTTTTTAAGGACAT
TCTTCTTTAAGCATGGAAAGTGTAAAGNGTACACGAatgtcagggtacct
tttttttcttcccaggtagaaaatattgaagaaaatttggaatttcagtG
CCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagttttcaaaaaac
aacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAGAACACCCCCGT
TAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATATTTCCATACCG
GAATGAATGAGAGATTACTTTTACAATACAATGCAATATAATTGAACAAA
ACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTCCTGGATTACCC
GGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGTAAACTACCTAA
GTTTATTAATATTGGTGAATATGGTCTAAAACTGCTCANTGGTACTGCTG
GTATTCAAGGTAAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTA
AAACTGCTCTGTCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGG
TAAACcattaaataaaatttgaaatatgattttcaATTGATATCTTAATT
CTAACTCTAAGATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTC
CTTAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTG
GCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGA
GTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAAC
TCGTGGCTTGATAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcat
caaaaaatataaatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAA
CCCCCCAATGGTGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTA
ATGGgttattaaagggacataacagtacttgcgaaatttgtaaacaaact
gtatgcagcggataaaaaatcaaaccaaatatggctaattttgattgttc
aattattttacaagtttgttttttggacacgtgattttaattgttaattt
taatgacacgtggttcgcgcaatgtttacattttattactTTAATGTCTT
TTTAAGGACATTCTTCTTTAAGCATGGAAAGTGTAAAGTTtattgtacag
ggtgtccctaataaaagtatcgagtttgaacatgcgattgagtagaaagt
tttaagtgtgtattcacaaaattgtattttaagctctccctctNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgagaaaaacgcaacaat
taaaacatgtttgtaaagaatcgtatgtaaaactatgaaaataataaaaa
tggaatgtatggaacaataaaaaagtaaaactaggcatttatgcaacagg
ggaatagtaaaaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATGGTTCTC
CAAATGGTAAATGATCAAATGAAACTCTTCCCAGAGGTTGCACCTTTCTA
GTGGGCGTAATTTCAGGGAATCTTTTAGtgaagaatttttgaaaactgca
agtgatttttaagtgctttaaagtaagGTTTGAAGTAGAGTTTtgacatg
agacttaagacttaagactttaagatctcaggatctaaaaactcaaaaat
tttctagtaAGGCTGAAAATATAGCCTgaaagccacttaacccctctcAA
ATAGAAAAACTCAATGAAACAAAGGGAGGGAGGTACTGAAATCGCAGttc
tcgcccgagctttaaattttgacaaattttgaaataccCAAAAGTGCCAC
TATATTTCGGTAAAGATTGGGAATGTATAATTATTCGGAATTTACTTTTA
ATTCGTAGGAATGCAGCTTTGTTAAGAAGTACCCACATACATATGTTAAA
GTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGGAAAAAGATG
GTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTCCTATTGGTC
TTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTGACTGGATCG
TGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCATGTTCAAAA
TGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAACTAATATTA
TCATTGAAGAAGTTATTCCACCACAAGCTTAAAGATGTAACAgtttttat
ttctaaatttaaaaaactcTACAACTCAcgctctaattcgattttcatcg
aataagggagcgtatcgaatagtagagcgtcgtttatgagtgTTCCTTTT
TGACGGaggctttcaatattatcgaataatggagcgtatgaataatagaa
cgtcgaattagagtgtcaactgtatattcatatttacataaatactctac
cattttattttattcacaGTCCAATTAAAAAGCTGCAGAAGAAACCGAAG
AAATATTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002826-exon-sc0000023-1491911889:772285..772452 | TCONS_00002826-exon-sc0000023-1491911889:772285..772452 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1510915933:772285..772452 | TCONS_00002826-exon-sc0000023-1510915933:772285..772452 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1575043694:772285..772452 | TCONS_00002826-exon-sc0000023-1575043694:772285..772452 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1491911889:775013..775094 | TCONS_00002826-exon-sc0000023-1491911889:775013..775094 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1510915933:775013..775094 | TCONS_00002826-exon-sc0000023-1510915933:775013..775094 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1575043694:775013..775094 | TCONS_00002826-exon-sc0000023-1575043694:775013..775094 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1491911889:775469..775666 | TCONS_00002826-exon-sc0000023-1491911889:775469..775666 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1510915933:775469..775666 | TCONS_00002826-exon-sc0000023-1510915933:775469..775666 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1575043694:775469..775666 | TCONS_00002826-exon-sc0000023-1575043694:775469..775666 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1491911889:776177..776230 | TCONS_00002826-exon-sc0000023-1491911889:776177..776230 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1510915933:776177..776230 | TCONS_00002826-exon-sc0000023-1510915933:776177..776230 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1575043694:776177..776230 | TCONS_00002826-exon-sc0000023-1575043694:776177..776230 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1491911889:776729..776782 | TCONS_00002826-exon-sc0000023-1491911889:776729..776782 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1510915933:776729..776782 | TCONS_00002826-exon-sc0000023-1510915933:776729..776782 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1575043694:776729..776782 | TCONS_00002826-exon-sc0000023-1575043694:776729..776782 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1491911889:776979..777139 | TCONS_00002826-exon-sc0000023-1491911889:776979..777139 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1510915933:776979..777139 | TCONS_00002826-exon-sc0000023-1510915933:776979..777139 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1575043694:776979..777139 | TCONS_00002826-exon-sc0000023-1575043694:776979..777139 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1491911889:779793..780395 | TCONS_00002826-exon-sc0000023-1491911889:779793..780395 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1510915933:779793..780395 | TCONS_00002826-exon-sc0000023-1510915933:779793..780395 | Clytia hemisphaerica | exon |
TCONS_00002826-exon-sc0000023-1575043694:779793..780395 | TCONS_00002826-exon-sc0000023-1575043694:779793..780395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000023 | supercontig | sc0000023:772285..780395 + |
Blast
The following BLAST results are available for this feature:
|