XLOC_001541 (gene) - C. hemisphaerica

Overview
NameXLOC_001541
Unique NameXLOC_001541
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000023:772285..780395+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001541 ID=XLOC_001541|Name=XLOC_001541|organism=Clytia hemisphaerica|type=gene|length=8111bp|location=Sequence derived from alignment at sc0000023:772285..780395+ (Clytia hemisphaerica)
CTCGTTTGGAAGAGAGATTTCAtaatatatttttagttttttttgtcgTG
GAATTATTCTAGGGAGATcattatgaaaatatttcatttgTTTGTCTACT
TGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCC
ACAGTTGATGACATTGAGGTTGGTGTctccattatttttttatttttact
tattcCTTGGTACCTACAACCATGAActaatgtttgagaaaaacactgga
aaatgtttggaaaaccaAGCGGCAATGTTGAGTGCAAACGTCCCACCGAC
CTTTCCACTGCCCTTcaagggggggtttcatggttggcgggggagcggaa
tcggcccttttttcggacggagtggcggaatttggcgaaaattttgacgg
aattacggaaattaggttctctgacggagacggaaaattagacaatttta
gtgcggaaaaacggaatttagcaaaaaaatttgcggaatttcggaattNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgaattttcggtgacggaattttggttcaatttaagacggtttgacgga
aattggagaaaaaattgacggaattgcggaatcgggtaccccctgaaacc
ctcCCCTAGTAAAGCAActagatttttaaagaaatatataCACAAAAGAT
AGCACAATAAACACAGAAGGCCTCAGATACTTTTTATCTTCCAATGCATA
ATCCCTTGGAACAACGTTTCAACCAACTCTGAAATTCAttggaaaaaaat
cttcttttaaatcatgaacatataaacgactggacatccatctcctctgt
atttttgaagataacactgctagcttcgttgccgcctcgttaaaatcatc
aaatgaaacaataaattctgatggtatacctcttgggaataccttctcag
gcattttaaggcctgtccaaattttccgtaatttttaaacaccaatagca
ctcgTCAAGAGGTGTTCATTTATAcgtttttggaagcgtattagggtgta
gaatatgaaaagtgctgttcgataattcttttgtttgcctaaataaagat
acatggataaataatgcaaaaatgtaaaaatgctgacgtcagcaaaactt
atttcttaaataacttttgattggcttaattctagatgctgaaattttgg
agaatgcaagagaatattgaaaagcacattttggatcaaagttttttttt
gaaatttgatgacgtcagcaaaaataagtaaaaaacgcatttttgcgaaa
atatgctgacgtcagcaaaatttcaaaatatttttgatttaaaatgtgCC
TATTCATAATATCCtactttggttaaaatttcagcatctaaagttaagcc
aatcaaaacttattcaaaaaataagttttgctgacgtcagcatttttaca
ttttttgcaatatttattcatatatctttatttaggcaagcaaaacaatt
attgaacagcacttttcatattctacacTNcaaaaaggtatgaatgaaca
cctcttggcgagtgctattggtgtttaaaaattacagaaaatttggacat
gccttaaaaTGCCTGANNNNNNNCAaaatttcgacaaaagtctttgttgt
tctacttttctcaagtcttttatctatatcataacaaagataacagaggc
aaaatcatcgtcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGagttga
aaaagttgataaaatatattgcaaactcgtgaaaaaatttgaaaataatt
tttttgtgcattaggagtaatgttcaagctctatcaatcatttaactaaa
ataattcaaagaaataaaattacgacggaatattgtcggattttttatag
caattttgaaatacaggcggcaacgaagctcgcttcaaagagacaataaa
agatagatgtccagtcgtttatatgttcatgtttAAATACATAGCATTTG
GATCATTAAGCCTCTtttcacccctgtatcacagacccggtggcATCCCA
CTCAGTGGAATTAAAAGATAAATACAGTACAGACTTAACTTAACTTTGCC
CAAAGTTTGGCTATCTCATTCTGATCCCATATTACAGATACATGGGTGGC
TTTGATTGTGTATGGATAAATGCCTAAGGCTTGTTAAGAATATCCCAGCG
TCGGAGttaaactaaataaaaaatcatggcTTTAAGCCCCTTTTAAGACA
AAATGCATgtaaattatgatttttttagaaCGATGTCTTGATGTCTAAAA
GCCGTCATTActtttgcaaaaatgttttacaaAATCGTGACGGAAAAGAC
GGGAGAGATGGTGAGTAAATCCTTCATGGTAAATCCTTGTGCTTTTCTTA
GTTTTCCCCACACAATCAGGCCTAACTCCAAATCGACTCGCTAGTTTGAT
TCAAACGGGAAAGACTGCAGAATTTTTTCACCCCGCTGAGGGGAAAGAAT
CTACCGGGACACTTACACAGAGGTAAATCTGTCATTCCATCGCCTGTACA
ATTTGAATACTGCTCCATTTTGATTAAATATTACGTTGAGAAAAATGCTT
CGATGGAAAGAAAACTTGGGGGATTTAACGaattatgttaaaaaaactgc
atctaaaaaaaacctttcaacCATCTATAATATCAAATTTCTgtgataaa
attattttcaaaacagttTGAAATTACTGTTTAGGAAGGGATGGGAGAGA
TGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCTACAGGTCGAGCTGGGA
AGGATTGCGATCAACAAATGCAATGGGAACGAATTCAACATAGACCACCA
AGCAATGACGGAACTCAAGGATTAACTGGAGAAAAAGGTGATAAAGGTGC
TCCTGGAAAAGATGGTGCTCATGGTACCCCTGGTAAGAATCACTTGTAAG
ATTGTGTTTATTGAGACTATTCAGTTTACGTTCTCTATGACTCTGTCGAT
ACGCTCCATGATGCtaaaagtccccgtcaacaagaaactctaataaacga
cgctctactattcggtaggctcccttattcgatgaaaatccaattcccct
tgaaaattgtTCTACAGAGCGCTTACTAGTAATCAAGTCGTGCAAAGAAG
TAACTAGTAAATACTGTTCATGTTCCAGATGCAAGCAATTTTACACAATT
GACGAAAACATCACTTTTGACCCCTCAACATTCATTGTCTTACGATATAT
TGGACGAAAAATCAcgtagaaatatttgaaaagcttcaagaaaaaacaat
tgcTAAAATAGGTCAAGCAATTTATAGAACAGGATCAAATCTTCTTTAAT
CTTCTCTTTATGAATTAATCCAGAATATTGACCAAATGCCTGATTTATAT
GCGCCAACCTTTATCTTTTGACCAAGTTTTAATTCTTTATAGGTTTGCCT
GGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAAAGGTAA
GCTTCCCTCAGCTTCCTTCAGTCAGTTGAGACGTTGGAACAAAAGTAAAA
TATATAAAGACCTCCAAGTTTAAATATTTTTCTCAACATCATATAATATG
GCCAAGAATTATTTTCTTAAAATTCTATTGTTAACAAATCCATGAGTTAA
TTTTTCGGGgggggggggggggtactggggcaaaaagaggtacacgaatg
tcagggtaccttttttttcttcccaggtagaaaatattgaagaaaatttg
gaatttcagtGCCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagt
tttcaaaaaacaacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAG
AACACCCCCGTTAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATA
TTTCCATACCGGAATGAATGAGAGATTACTTTTACAATACAATGCAATAT
AATTGAACAAAACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTC
CTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGT
AAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTAAAACTGCTCTG
TCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGGTAAACcattaa
ataaaatttgaaatatgattttcaATTGATATCTTAATTCTAACTCTAAG
ATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTCCTTAGGACCTC
CTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTGGCAAAAATGGA
GCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGAGTAGGAAATTG
GAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAACTCGTGGCTTGA
TAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcatcaaaaaatata
aatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAACCCCCCAATGG
TGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTAATGGgttatta
aagggacataacagtacttgcgaaatttgtaaacaaactgtatgcagcgg
ataaaaaatcaaaccaaatatggctaattttgattgttcaattattttac
aagtttgttttttggacacgtgattttaattgttaattttaatgacacgt
ggttcgcgcaatgtttacattttattactTTAATGTCTTTTTAAGGACAT
TCTTCTTTAAGCATGGAAAGTGTAAAGNGTACACGAatgtcagggtacct
tttttttcttcccaggtagaaaatattgaagaaaatttggaatttcagtG
CCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagttttcaaaaaac
aacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAGAACACCCCCGT
TAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATATTTCCATACCG
GAATGAATGAGAGATTACTTTTACAATACAATGCAATATAATTGAACAAA
ACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTCCTGGATTACCC
GGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGTAAACTACCTAA
GTTTATTAATATTGGTGAATATGGTCTAAAACTGCTCANTGGTACTGCTG
GTATTCAAGGTAAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTA
AAACTGCTCTGTCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGG
TAAACcattaaataaaatttgaaatatgattttcaATTGATATCTTAATT
CTAACTCTAAGATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTC
CTTAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTG
GCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGA
GTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAAC
TCGTGGCTTGATAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcat
caaaaaatataaatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAA
CCCCCCAATGGTGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTA
ATGGgttattaaagggacataacagtacttgcgaaatttgtaaacaaact
gtatgcagcggataaaaaatcaaaccaaatatggctaattttgattgttc
aattattttacaagtttgttttttggacacgtgattttaattgttaattt
taatgacacgtggttcgcgcaatgtttacattttattactTTAATGTCTT
TTTAAGGACATTCTTCTTTAAGCATGGAAAGTGTAAAGTTtattgtacag
ggtgtccctaataaaagtatcgagtttgaacatgcgattgagtagaaagt
tttaagtgtgtattcacaaaattgtattttaagctctccctctNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgagaaaaacgcaacaat
taaaacatgtttgtaaagaatcgtatgtaaaactatgaaaataataaaaa
tggaatgtatggaacaataaaaaagtaaaactaggcatttatgcaacagg
ggaatagtaaaaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATGGTTCTC
CAAATGGTAAATGATCAAATGAAACTCTTCCCAGAGGTTGCACCTTTCTA
GTGGGCGTAATTTCAGGGAATCTTTTAGtgaagaatttttgaaaactgca
agtgatttttaagtgctttaaagtaagGTTTGAAGTAGAGTTTtgacatg
agacttaagacttaagactttaagatctcaggatctaaaaactcaaaaat
tttctagtaAGGCTGAAAATATAGCCTgaaagccacttaacccctctcAA
ATAGAAAAACTCAATGAAACAAAGGGAGGGAGGTACTGAAATCGCAGttc
tcgcccgagctttaaattttgacaaattttgaaataccCAAAAGTGCCAC
TATATTTCGGTAAAGATTGGGAATGTATAATTATTCGGAATTTACTTTTA
ATTCGTAGGAATGCAGCTTTGTTAAGAAGTACCCACATACATATGTTAAA
GTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGGAAAAAGATG
GTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTCCTATTGGTC
TTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTGACTGGATCG
TGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCATGTTCAAAA
TGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAACTAATATTA
TCATTGAAGAAGTTATTCCACCACAAGCTTAAAGATGTAACAgtttttat
ttctaaatttaaaaaactcTACAACTCAcgctctaattcgattttcatcg
aataagggagcgtatcgaatagtagagcgtcgtttatgagtgTTCCTTTT
TGACGGaggctttcaatattatcgaataatggagcgtatgaataatagaa
cgtcgaattagagtgtcaactgtatattcatatttacataaatactctac
cattttattttattcacaGTCCAATTAAAAAGCTGCAGAAGAAACCGAAG
AAATATTTACC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002824TCONS_00002824Clytia hemisphaericatranscript
TCONS_00002825TCONS_00002825Clytia hemisphaericatranscript
TCONS_00002826TCONS_00002826Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002824-proteinTCONS_00002824-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:772285..780395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.13	0.07	0.21	0.04	0.07	0	0	0	0.03	0.19	0	0.02	0	0.11	0.1	0	0.02	0.07	0.11	1.99	1.73	1.36	1.91	3	2.03	0.05	0.1	0.14	0.15