TCONS_00002824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002824
Unique NameTCONS_00002824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002824 ID=TCONS_00002824|Name=TCONS_00002824|organism=Clytia hemisphaerica|type=transcript|length=1320bp
CTCGTTTGGAAGAGAGATTTCAtaatatatttttagttttttttgtcgTG
GAATTATTCTAGGGAGATcattatgaaaatatttcatttgTTTGTCTACT
TGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCC
ACAGTTGATGACATTGAGaaCGATGTCTTGATGTCTAAAAGCCGTCATTA
cttttgcaaaaatgttttacaaAATCGTGACGGAAAAGACGGGAGAGATG
GAAGGGATGGGAGAGATGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCT
ACAGGTCGAGCTGGGAAGGATTGCGATCAACAAATGCAATGGGAACGAAT
TCAACATAGACCACCAAGCAATGACGGAACTCAAGGATTAACTGGAGAAA
AAGGTGATAAAGGTGCTCCTGGAAAAGATGGTGCTCATGGTACCCCTGGT
TTGCCTGGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAA
AGGTTCTCCTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTA
TTCAAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCT
GGCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAG
AGTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAA
CTCGTGGCTTGATAAAAGAATGCAGCTTTGTTAAGAAGTACCCACATACA
TATGTTAAAGTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGG
AAAAAGATGGTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTC
CTATTGGTCTTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTG
ACTGGATCGTGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCA
TGTTCAAAATGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAA
CTAATATTATCATTGAAGAAGTTATTCCACCACAAGCTTAAAGATGTAAC
AgtttttatttctaaatttaaaaaactcTACAACTCAcgctctaattcga
ttttcatcgaataagggagcgtatcgaatagtagagcgtcgtttatgagt
gTTCCTTTTTGACGGaggctttcaatattatcgaataatggagcgtatga
ataatagaacgtcgaattagagtgtcaactgtatattcatatttacataa
atactctaccattttattttattcacaGTCCAATTAAAAAGCTGCAGAAG
AAACCGAAGAAATATTTACC
Run BLAST on NCBI

protein sequence of TCONS_00002824-protein

>TCONS_00002824-protein ID=TCONS_00002824-protein|Name=TCONS_00002824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MKIFHLFVYLFLLFNYHQCKHSEDQSTVDDIENDVLMSKSRHYFCKNVLQ
NRDGKDGRDGRDGRDGIRGPPGEKGSTGRAGKDCDQQMQWERIQHRPPSN
DGTQGLTGEKGDKGAPGKDGAHGTPGLPGVPGRDGINGTIGEKGSPGLPG
RDGENGTAGIQGPPGESGRNGTDGKPGKNGAPGIPGEDGNPGRVGNWKEC
KWNNIQDSRTRGLIKECSFVKKYPHTYVKVTVVTNVHIRSNTGKRWFVTF
DNKECSHQTPIGLFVSNVTGFTPFYLTGSCLVNKTGIVLIGFHVQNGSVV
AYTGHGNSSTNIIIEEVIPPQA
Run BLAST on NCBI

transcript from alignment at sc0000023:772285..780395+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002824 ID=TCONS_00002824|Name=TCONS_00002824|organism=Clytia hemisphaerica|type=transcript|length=8111bp|location=Sequence derived from alignment at sc0000023:772285..780395+ (Clytia hemisphaerica)
CTCGTTTGGAAGAGAGATTTCAtaatatatttttagttttttttgtcgTG
GAATTATTCTAGGGAGATcattatgaaaatatttcatttgTTTGTCTACT
TGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCC
ACAGTTGATGACATTGAGGTTGGTGTctccattatttttttatttttact
tattcCTTGGTACCTACAACCATGAActaatgtttgagaaaaacactgga
aaatgtttggaaaaccaAGCGGCAATGTTGAGTGCAAACGTCCCACCGAC
CTTTCCACTGCCCTTcaagggggggtttcatggttggcgggggagcggaa
tcggcccttttttcggacggagtggcggaatttggcgaaaattttgacgg
aattacggaaattaggttctctgacggagacggaaaattagacaatttta
gtgcggaaaaacggaatttagcaaaaaaatttgcggaatttcggaattNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgaattttcggtgacggaattttggttcaatttaagacggtttgacgga
aattggagaaaaaattgacggaattgcggaatcgggtaccccctgaaacc
ctcCCCTAGTAAAGCAActagatttttaaagaaatatataCACAAAAGAT
AGCACAATAAACACAGAAGGCCTCAGATACTTTTTATCTTCCAATGCATA
ATCCCTTGGAACAACGTTTCAACCAACTCTGAAATTCAttggaaaaaaat
cttcttttaaatcatgaacatataaacgactggacatccatctcctctgt
atttttgaagataacactgctagcttcgttgccgcctcgttaaaatcatc
aaatgaaacaataaattctgatggtatacctcttgggaataccttctcag
gcattttaaggcctgtccaaattttccgtaatttttaaacaccaatagca
ctcgTCAAGAGGTGTTCATTTATAcgtttttggaagcgtattagggtgta
gaatatgaaaagtgctgttcgataattcttttgtttgcctaaataaagat
acatggataaataatgcaaaaatgtaaaaatgctgacgtcagcaaaactt
atttcttaaataacttttgattggcttaattctagatgctgaaattttgg
agaatgcaagagaatattgaaaagcacattttggatcaaagttttttttt
gaaatttgatgacgtcagcaaaaataagtaaaaaacgcatttttgcgaaa
atatgctgacgtcagcaaaatttcaaaatatttttgatttaaaatgtgCC
TATTCATAATATCCtactttggttaaaatttcagcatctaaagttaagcc
aatcaaaacttattcaaaaaataagttttgctgacgtcagcatttttaca
ttttttgcaatatttattcatatatctttatttaggcaagcaaaacaatt
attgaacagcacttttcatattctacacTNcaaaaaggtatgaatgaaca
cctcttggcgagtgctattggtgtttaaaaattacagaaaatttggacat
gccttaaaaTGCCTGANNNNNNNCAaaatttcgacaaaagtctttgttgt
tctacttttctcaagtcttttatctatatcataacaaagataacagaggc
aaaatcatcgtcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGagttga
aaaagttgataaaatatattgcaaactcgtgaaaaaatttgaaaataatt
tttttgtgcattaggagtaatgttcaagctctatcaatcatttaactaaa
ataattcaaagaaataaaattacgacggaatattgtcggattttttatag
caattttgaaatacaggcggcaacgaagctcgcttcaaagagacaataaa
agatagatgtccagtcgtttatatgttcatgtttAAATACATAGCATTTG
GATCATTAAGCCTCTtttcacccctgtatcacagacccggtggcATCCCA
CTCAGTGGAATTAAAAGATAAATACAGTACAGACTTAACTTAACTTTGCC
CAAAGTTTGGCTATCTCATTCTGATCCCATATTACAGATACATGGGTGGC
TTTGATTGTGTATGGATAAATGCCTAAGGCTTGTTAAGAATATCCCAGCG
TCGGAGttaaactaaataaaaaatcatggcTTTAAGCCCCTTTTAAGACA
AAATGCATgtaaattatgatttttttagaaCGATGTCTTGATGTCTAAAA
GCCGTCATTActtttgcaaaaatgttttacaaAATCGTGACGGAAAAGAC
GGGAGAGATGGTGAGTAAATCCTTCATGGTAAATCCTTGTGCTTTTCTTA
GTTTTCCCCACACAATCAGGCCTAACTCCAAATCGACTCGCTAGTTTGAT
TCAAACGGGAAAGACTGCAGAATTTTTTCACCCCGCTGAGGGGAAAGAAT
CTACCGGGACACTTACACAGAGGTAAATCTGTCATTCCATCGCCTGTACA
ATTTGAATACTGCTCCATTTTGATTAAATATTACGTTGAGAAAAATGCTT
CGATGGAAAGAAAACTTGGGGGATTTAACGaattatgttaaaaaaactgc
atctaaaaaaaacctttcaacCATCTATAATATCAAATTTCTgtgataaa
attattttcaaaacagttTGAAATTACTGTTTAGGAAGGGATGGGAGAGA
TGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCTACAGGTCGAGCTGGGA
AGGATTGCGATCAACAAATGCAATGGGAACGAATTCAACATAGACCACCA
AGCAATGACGGAACTCAAGGATTAACTGGAGAAAAAGGTGATAAAGGTGC
TCCTGGAAAAGATGGTGCTCATGGTACCCCTGGTAAGAATCACTTGTAAG
ATTGTGTTTATTGAGACTATTCAGTTTACGTTCTCTATGACTCTGTCGAT
ACGCTCCATGATGCtaaaagtccccgtcaacaagaaactctaataaacga
cgctctactattcggtaggctcccttattcgatgaaaatccaattcccct
tgaaaattgtTCTACAGAGCGCTTACTAGTAATCAAGTCGTGCAAAGAAG
TAACTAGTAAATACTGTTCATGTTCCAGATGCAAGCAATTTTACACAATT
GACGAAAACATCACTTTTGACCCCTCAACATTCATTGTCTTACGATATAT
TGGACGAAAAATCAcgtagaaatatttgaaaagcttcaagaaaaaacaat
tgcTAAAATAGGTCAAGCAATTTATAGAACAGGATCAAATCTTCTTTAAT
CTTCTCTTTATGAATTAATCCAGAATATTGACCAAATGCCTGATTTATAT
GCGCCAACCTTTATCTTTTGACCAAGTTTTAATTCTTTATAGGTTTGCCT
GGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAAAGGTAA
GCTTCCCTCAGCTTCCTTCAGTCAGTTGAGACGTTGGAACAAAAGTAAAA
TATATAAAGACCTCCAAGTTTAAATATTTTTCTCAACATCATATAATATG
GCCAAGAATTATTTTCTTAAAATTCTATTGTTAACAAATCCATGAGTTAA
TTTTTCGGGgggggggggggggtactggggcaaaaagaggtacacgaatg
tcagggtaccttttttttcttcccaggtagaaaatattgaagaaaatttg
gaatttcagtGCCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagt
tttcaaaaaacaacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAG
AACACCCCCGTTAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATA
TTTCCATACCGGAATGAATGAGAGATTACTTTTACAATACAATGCAATAT
AATTGAACAAAACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTC
CTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGT
AAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTAAAACTGCTCTG
TCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGGTAAACcattaa
ataaaatttgaaatatgattttcaATTGATATCTTAATTCTAACTCTAAG
ATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTCCTTAGGACCTC
CTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTGGCAAAAATGGA
GCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGAGTAGGAAATTG
GAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAACTCGTGGCTTGA
TAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcatcaaaaaatata
aatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAACCCCCCAATGG
TGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTAATGGgttatta
aagggacataacagtacttgcgaaatttgtaaacaaactgtatgcagcgg
ataaaaaatcaaaccaaatatggctaattttgattgttcaattattttac
aagtttgttttttggacacgtgattttaattgttaattttaatgacacgt
ggttcgcgcaatgtttacattttattactTTAATGTCTTTTTAAGGACAT
TCTTCTTTAAGCATGGAAAGTGTAAAGNGTACACGAatgtcagggtacct
tttttttcttcccaggtagaaaatattgaagaaaatttggaatttcagtG
CCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagttttcaaaaaac
aacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAGAACACCCCCGT
TAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATATTTCCATACCG
GAATGAATGAGAGATTACTTTTACAATACAATGCAATATAATTGAACAAA
ACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTCCTGGATTACCC
GGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGTAAACTACCTAA
GTTTATTAATATTGGTGAATATGGTCTAAAACTGCTCANTGGTACTGCTG
GTATTCAAGGTAAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTA
AAACTGCTCTGTCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGG
TAAACcattaaataaaatttgaaatatgattttcaATTGATATCTTAATT
CTAACTCTAAGATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTC
CTTAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTG
GCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGA
GTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAAC
TCGTGGCTTGATAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcat
caaaaaatataaatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAA
CCCCCCAATGGTGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTA
ATGGgttattaaagggacataacagtacttgcgaaatttgtaaacaaact
gtatgcagcggataaaaaatcaaaccaaatatggctaattttgattgttc
aattattttacaagtttgttttttggacacgtgattttaattgttaattt
taatgacacgtggttcgcgcaatgtttacattttattactTTAATGTCTT
TTTAAGGACATTCTTCTTTAAGCATGGAAAGTGTAAAGTTtattgtacag
ggtgtccctaataaaagtatcgagtttgaacatgcgattgagtagaaagt
tttaagtgtgtattcacaaaattgtattttaagctctccctctNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgagaaaaacgcaacaat
taaaacatgtttgtaaagaatcgtatgtaaaactatgaaaataataaaaa
tggaatgtatggaacaataaaaaagtaaaactaggcatttatgcaacagg
ggaatagtaaaaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATGGTTCTC
CAAATGGTAAATGATCAAATGAAACTCTTCCCAGAGGTTGCACCTTTCTA
GTGGGCGTAATTTCAGGGAATCTTTTAGtgaagaatttttgaaaactgca
agtgatttttaagtgctttaaagtaagGTTTGAAGTAGAGTTTtgacatg
agacttaagacttaagactttaagatctcaggatctaaaaactcaaaaat
tttctagtaAGGCTGAAAATATAGCCTgaaagccacttaacccctctcAA
ATAGAAAAACTCAATGAAACAAAGGGAGGGAGGTACTGAAATCGCAGttc
tcgcccgagctttaaattttgacaaattttgaaataccCAAAAGTGCCAC
TATATTTCGGTAAAGATTGGGAATGTATAATTATTCGGAATTTACTTTTA
ATTCGTAGGAATGCAGCTTTGTTAAGAAGTACCCACATACATATGTTAAA
GTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGGAAAAAGATG
GTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTCCTATTGGTC
TTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTGACTGGATCG
TGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCATGTTCAAAA
TGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAACTAATATTA
TCATTGAAGAAGTTATTCCACCACAAGCTTAAAGATGTAACAgtttttat
ttctaaatttaaaaaactcTACAACTCAcgctctaattcgattttcatcg
aataagggagcgtatcgaatagtagagcgtcgtttatgagtgTTCCTTTT
TGACGGaggctttcaatattatcgaataatggagcgtatgaataatagaa
cgtcgaattagagtgtcaactgtatattcatatttacataaatactctac
cattttattttattcacaGTCCAATTAAAAAGCTGCAGAAGAAACCGAAG
AAATATTTACC

Coding sequence (CDS) from alignment at sc0000023:772285..780395+

>TCONS_00002824 ID=TCONS_00002824|Name=TCONS_00002824|organism=Clytia hemisphaerica|type=CDS|length=6783bp|location=Sequence derived from alignment at sc0000023:772285..780395+ (Clytia hemisphaerica)
atgaaaatatttcatttgTTTGTCTACTTGTTTCTACTCTTCAACTACCA
CCAATGCAAACACTCTGAAGATCAATCCACAGTTGATGACATTGAGaaCG
ATGTCTTGATGTCTAAAAGCCGTCATTActtttgcaaaaatgttttacaa
AATCGTGACGGAAAAGACGGGAGAGATGGAAGGGATGGGAGAGATGGTAT
CCGAGGCCCACCTGGAGAAAAAGGGTCTACAGGTCGAGCTGGGAAGGATT
GCGATCAACAAATGCAATGGGAACGAATTCAACATAGACCACCAAGCAAT
GACGGAACTCAAGGATTAACTGGAGAAAAAGGTGATAAAGGTGCTCCTGG
AAAAGATGGTGCTCATGGTACCCCTGGTTTGCCTGGTGTTCCTGGACGGG
ATGGAATCAATGGCACTATTGGTGAAAAAGGTTCTCCTGGATTACCCGGA
AGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGACCTCCTGGTGAATC
TGGACGGAATGGAACAGATGGGAAACCTGGCAAAAATGGAGCTCCTGGAA
TCCCTGGAGAAGATGGAAATCCAGGAAGAGTAGGAAATTGGAAGGAATGC
AAATGGAATAATATCCAAGATTCGAGAACTCGTGGCTTGATAAAAGAATG
CAGCTTTGTTAAGAAGTACCCACATACATATGTTAAAGTTACAGTTGTAA
CAAATGTCCACATTAGAAGCAATACAGGAAAAAGATGGTTCGTTACTTTC
GATAACAAAGAATGCAGTCATCAAACTCCTATTGGTCTTTTTGTTAGTAA
TGTTACTGGTTTTACGCCGTTTTATTTGACTGGATCGTGTCTGGTGAACA
AAACAGGAATTGTGTTGATTGGTTTTCATGTTCAAAATGGTAGCGTTGTT
GCGTATACAGGACACGGAAATTCTTCAACTAATATTATCATTGAAGAAGT
TATTCCACCACAAGCTTAAatgaaaatatttcatttgTTTGTCTACTTGT
TTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCCACA
GTTGATGACATTGAGaaCGATGTCTTGATGTCTAAAAGCCGTCATTActt
ttgcaaaaatgttttacaaAATCGTGACGGAAAAGACGGGAGAGATGGAA
GGGATGGGAGAGATGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCTACA
GGTCGAGCTGGGAAGGATTGCGATCAACAAATGCAATGGGAACGAATTCA
ACATAGACCACCAAGCAATGACGGAACTCAAGGATTAACTGGAGAAAAAG
GTGATAAAGGTGCTCCTGGAAAAGATGGTGCTCATGGTACCCCTGGTTTG
CCTGGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAAAGG
TTCTCCTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTATTC
AAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTGGC
AAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGAGT
AGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAACTC
GTGGCTTGATAAAAGAATGCAGCTTTGTTAAGAAGTACCCACATACATAT
GTTAAAGTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGGAAA
AAGATGGTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTCCTA
TTGGTCTTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTGACT
GGATCGTGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCATGT
TCAAAATGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAACTA
ATATTATCATTGAAGAAGTTATTCCACCACAAGCTTAAatgaaaatattt
catttgTTTGTCTACTTGTTTCTACTCTTCAACTACCACCAATGCAAACA
CTCTGAAGATCAATCCACAGTTGATGACATTGAGaaCGATGTCTTGATGT
CTAAAAGCCGTCATTActtttgcaaaaatgttttacaaAATCGTGACGGA
AAAGACGGGAGAGATGGAAGGGATGGGAGAGATGGTATCCGAGGCCCACC
TGGAGAAAAAGGGTCTACAGGTCGAGCTGGGAAGGATTGCGATCAACAAA
TGCAATGGGAACGAATTCAACATAGACCACCAAGCAATGACGGAACTCAA
GGATTAACTGGAGAAAAAGGTGATAAAGGTGCTCCTGGAAAAGATGGTGC
TCATGGTACCCCTGGTTTGCCTGGTGTTCCTGGACGGGATGGAATCAATG
GCACTATTGGTGAAAAAGGTTCTCCTGGATTACCCGGAAGAGATGGTGAA
AATGGTACTGCTGGTATTCAAGGACCTCCTGGTGAATCTGGACGGAATGG
AACAGATGGGAAACCTGGCAAAAATGGAGCTCCTGGAATCCCTGGAGAAG
ATGGAAATCCAGGAAGAGTAGGAAATTGGAAGGAATGCAAATGGAATAAT
ATCCAAGATTCGAGAACTCGTGGCTTGATAAAAGAATGCAGCTTTGTTAA
GAAGTACCCACATACATATGTTAAAGTTACAGTTGTAACAAATGTCCACA
TTAGAAGCAATACAGGAAAAAGATGGTTCGTTACTTTCGATAACAAAGAA
TGCAGTCATCAAACTCCTATTGGTCTTTTTGTTAGTAATGTTACTGGTTT
TACGCCGTTTTATTTGACTGGATCGTGTCTGGTGAACAAAACAGGAATTG
TGTTGATTGGTTTTCATGTTCAAAATGGTAGCGTTGTTGCGTATACAGGA
CACGGAAATTCTTCAACTAATATTATCATTGAAGAAGTTATTCCACCACA
AGCTTAAatgaaaatatttcatttgTTTGTCTACTTGTTTCTACTCTTCA
ACTACCACCAATGCAAACACTCTGAAGATCAATCCACAGTTGATGACATT
GAGaaCGATGTCTTGATGTCTAAAAGCCGTCATTActtttgcaaaaatgt
tttacaaAATCGTGACGGAAAAGACGGGAGAGATGGAAGGGATGGGAGAG
ATGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCTACAGGTCGAGCTGGG
AAGGATTGCGATCAACAAATGCAATGGGAACGAATTCAACATAGACCACC
AAGCAATGACGGAACTCAAGGATTAACTGGAGAAAAAGGTGATAAAGGTG
CTCCTGGAAAAGATGGTGCTCATGGTACCCCTGGTTTGCCTGGTGTTCCT
GGACGGGATGGAATCAATGGCACTATTGGTGAAAAAGGTTCTCCTGGATT
ACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGACCTCCTG
GTGAATCTGGACGGAATGGAACAGATGGGAAACCTGGCAAAAATGGAGCT
CCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGAGTAGGAAATTGGAA
GGAATGCAAATGGAATAATATCCAAGATTCGAGAACTCGTGGCTTGATAA
AAGAATGCAGCTTTGTTAAGAAGTACCCACATACATATGTTAAAGTTACA
GTTGTAACAAATGTCCACATTAGAAGCAATACAGGAAAAAGATGGTTCGT
TACTTTCGATAACAAAGAATGCAGTCATCAAACTCCTATTGGTCTTTTTG
TTAGTAATGTTACTGGTTTTACGCCGTTTTATTTGACTGGATCGTGTCTG
GTGAACAAAACAGGAATTGTGTTGATTGGTTTTCATGTTCAAAATGGTAG
CGTTGTTGCGTATACAGGACACGGAAATTCTTCAACTAATATTATCATTG
AAGAAGTTATTCCACCACAAGCTTAAatgaaaatatttcatttgTTTGTC
TACTTGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCA
ATCCACAGTTGATGACATTGAGaaCGATGTCTTGATGTCTAAAAGCCGTC
ATTActtttgcaaaaatgttttacaaAATCGTGACGGAAAAGACGGGAGA
GATGGAAGGGATGGGAGAGATGGTATCCGAGGCCCACCTGGAGAAAAAGG
GTCTACAGGTCGAGCTGGGAAGGATTGCGATCAACAAATGCAATGGGAAC
GAATTCAACATAGACCACCAAGCAATGACGGAACTCAAGGATTAACTGGA
GAAAAAGGTGATAAAGGTGCTCCTGGAAAAGATGGTGCTCATGGTACCCC
TGGTTTGCCTGGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTG
AAAAAGGTTCTCCTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCT
GGTATTCAAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAA
ACCTGGCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAG
GAAGAGTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCG
AGAACTCGTGGCTTGATAAAAGAATGCAGCTTTGTTAAGAAGTACCCACA
TACATATGTTAAAGTTACAGTTGTAACAAATGTCCACATTAGAAGCAATA
CAGGAAAAAGATGGTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAA
ACTCCTATTGGTCTTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTA
TTTGACTGGATCGTGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTT
TTCATGTTCAAAATGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCT
TCAACTAATATTATCATTGAAGAAGTTATTCCACCACAAGCTTAAatgaa
aatatttcatttgTTTGTCTACTTGTTTCTACTCTTCAACTACCACCAAT
GCAAACACTCTGAAGATCAATCCACAGTTGATGACATTGAGaaCGATGTC
TTGATGTCTAAAAGCCGTCATTActtttgcaaaaatgttttacaaAATCG
TGACGGAAAAGACGGGAGAGATGGAAGGGATGGGAGAGATGGTATCCGAG
GCCCACCTGGAGAAAAAGGGTCTACAGGTCGAGCTGGGAAGGATTGCGAT
CAACAAATGCAATGGGAACGAATTCAACATAGACCACCAAGCAATGACGG
AACTCAAGGATTAACTGGAGAAAAAGGTGATAAAGGTGCTCCTGGAAAAG
ATGGTGCTCATGGTACCCCTGGTTTGCCTGGTGTTCCTGGACGGGATGGA
ATCAATGGCACTATTGGTGAAAAAGGTTCTCCTGGATTACCCGGAAGAGA
TGGTGAAAATGGTACTGCTGGTATTCAAGGACCTCCTGGTGAATCTGGAC
GGAATGGAACAGATGGGAAACCTGGCAAAAATGGAGCTCCTGGAATCCCT
GGAGAAGATGGAAATCCAGGAAGAGTAGGAAATTGGAAGGAATGCAAATG
GAATAATATCCAAGATTCGAGAACTCGTGGCTTGATAAAAGAATGCAGCT
TTGTTAAGAAGTACCCACATACATATGTTAAAGTTACAGTTGTAACAAAT
GTCCACATTAGAAGCAATACAGGAAAAAGATGGTTCGTTACTTTCGATAA
CAAAGAATGCAGTCATCAAACTCCTATTGGTCTTTTTGTTAGTAATGTTA
CTGGTTTTACGCCGTTTTATTTGACTGGATCGTGTCTGGTGAACAAAACA
GGAATTGTGTTGATTGGTTTTCATGTTCAAAATGGTAGCGTTGTTGCGTA
TACAGGACACGGAAATTCTTCAACTAATATTATCATTGAAGAAGTTATTC
CACCACAAGCTTAAatgaaaatatttcatttgTTTGTCTACTTGTTTCTA
CTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCCACAGTTGA
TGACATTGAGaaCGATGTCTTGATGTCTAAAAGCCGTCATTActtttgca
aaaatgttttacaaAATCGTGACGGAAAAGACGGGAGAGATGGAAGGGAT
GGGAGAGATGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCTACAGGTCG
AGCTGGGAAGGATTGCGATCAACAAATGCAATGGGAACGAATTCAACATA
GACCACCAAGCAATGACGGAACTCAAGGATTAACTGGAGAAAAAGGTGAT
AAAGGTGCTCCTGGAAAAGATGGTGCTCATGGTACCCCTGGTTTGCCTGG
TGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAAAGGTTCTC
CTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGA
CCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTGGCAAAAA
TGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGAGTAGGAA
ATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAACTCGTGGC
TTGATAAAAGAATGCAGCTTTGTTAAGAAGTACCCACATACATATGTTAA
AGTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGGAAAAAGAT
GGTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTCCTATTGGT
CTTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTGACTGGATC
GTGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCATGTTCAAA
ATGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAACTAATATT
ATCATTGAAGAAGTTATTCCACCACAAGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001541XLOC_001541Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002824-proteinTCONS_00002824-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002824-exon-sc0000023-1491911889:772285..772452TCONS_00002824-exon-sc0000023-1491911889:772285..772452Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1510915933:772285..772452TCONS_00002824-exon-sc0000023-1510915933:772285..772452Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1575043694:772285..772452TCONS_00002824-exon-sc0000023-1575043694:772285..772452Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1491911889:775013..775094TCONS_00002824-exon-sc0000023-1491911889:775013..775094Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1510915933:775013..775094TCONS_00002824-exon-sc0000023-1510915933:775013..775094Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1575043694:775013..775094TCONS_00002824-exon-sc0000023-1575043694:775013..775094Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1491911889:775469..775666TCONS_00002824-exon-sc0000023-1491911889:775469..775666Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1510915933:775469..775666TCONS_00002824-exon-sc0000023-1510915933:775469..775666Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1575043694:775469..775666TCONS_00002824-exon-sc0000023-1575043694:775469..775666Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1491911889:776177..776230TCONS_00002824-exon-sc0000023-1491911889:776177..776230Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1510915933:776177..776230TCONS_00002824-exon-sc0000023-1510915933:776177..776230Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1575043694:776177..776230TCONS_00002824-exon-sc0000023-1575043694:776177..776230Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1491911889:777818..777871TCONS_00002824-exon-sc0000023-1491911889:777818..777871Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1510915933:777818..777871TCONS_00002824-exon-sc0000023-1510915933:777818..777871Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1575043694:777818..777871TCONS_00002824-exon-sc0000023-1575043694:777818..777871Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1491911889:778140..778300TCONS_00002824-exon-sc0000023-1491911889:778140..778300Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1510915933:778140..778300TCONS_00002824-exon-sc0000023-1510915933:778140..778300Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1575043694:778140..778300TCONS_00002824-exon-sc0000023-1575043694:778140..778300Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1491911889:779793..780395TCONS_00002824-exon-sc0000023-1491911889:779793..780395Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1510915933:779793..780395TCONS_00002824-exon-sc0000023-1510915933:779793..780395Clytia hemisphaericaexon
TCONS_00002824-exon-sc0000023-1575043694:779793..780395TCONS_00002824-exon-sc0000023-1575043694:779793..780395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:772285..780395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0417331	0.0241042	0.0711789	0.0143855	0.0226995	0	0	0	0.0111521	0.0647869	0	0.00743542	0	0.0364305	0.0324996	0	0.00825251	0.0231209	0.0367485	0.662364	0.575742	0.45335	0.636363	0.999694	0.675873	0.0150421	0.0322535	0.0478099	0.0486522
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top