TCONS_00002825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002825
Unique NameTCONS_00002825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002825 ID=TCONS_00002825|Name=TCONS_00002825|organism=Clytia hemisphaerica|type=transcript|length=1320bp
CTCGTTTGGAAGAGAGATTTCAtaatatatttttagttttttttgtcgTG
GAATTATTCTAGGGAGATcattatgaaaatatttcatttgTTTGTCTACT
TGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCC
ACAGTTGATGACATTGAGaaCGATGTCTTGATGTCTAAAAGCCGTCATTA
cttttgcaaaaatgttttacaaAATCGTGACGGAAAAGACGGGAGAGATG
GAAGGGATGGGAGAGATGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCT
ACAGGTCGAGCTGGGAAGGATTGCGATCAACAAATGCAATGGGAACGAAT
TCAACATAGACCACCAAGCAATGACGGAACTCAAGGATTAACTGGAGAAA
AAGGTGATAAAGGTGCTCCTGGAAAAGATGGTGCTCATGGTACCCCTGGT
TTGCCTGGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAA
AGGTTCTCCTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTA
TTCAAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCT
GGCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAG
AGTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAA
CTCGTGGCTTGATAAAAGAATGCAGCTTTGTTAAGAAGTACCCACATACA
TATGTTAAAGTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGG
AAAAAGATGGTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTC
CTATTGGTCTTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTG
ACTGGATCGTGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCA
TGTTCAAAATGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAA
CTAATATTATCATTGAAGAAGTTATTCCACCACAAGCTTAAAGATGTAAC
AgtttttatttctaaatttaaaaaactcTACAACTCAcgctctaattcga
ttttcatcgaataagggagcgtatcgaatagtagagcgtcgtttatgagt
gTTCCTTTTTGACGGaggctttcaatattatcgaataatggagcgtatga
ataatagaacgtcgaattagagtgtcaactgtatattcatatttacataa
atactctaccattttattttattcacaGTCCAATTAAAAAGCTGCAGAAG
AAACCGAAGAAATATTTACC
Run BLAST on NCBI

transcript from alignment at sc0000023:772285..780395+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002825 ID=TCONS_00002825|Name=TCONS_00002825|organism=Clytia hemisphaerica|type=transcript|length=8111bp|location=Sequence derived from alignment at sc0000023:772285..780395+ (Clytia hemisphaerica)
CTCGTTTGGAAGAGAGATTTCAtaatatatttttagttttttttgtcgTG GAATTATTCTAGGGAGATcattatgaaaatatttcatttgTTTGTCTACT TGTTTCTACTCTTCAACTACCACCAATGCAAACACTCTGAAGATCAATCC ACAGTTGATGACATTGAGGTTGGTGTctccattatttttttatttttact tattcCTTGGTACCTACAACCATGAActaatgtttgagaaaaacactgga aaatgtttggaaaaccaAGCGGCAATGTTGAGTGCAAACGTCCCACCGAC CTTTCCACTGCCCTTcaagggggggtttcatggttggcgggggagcggaa tcggcccttttttcggacggagtggcggaatttggcgaaaattttgacgg aattacggaaattaggttctctgacggagacggaaaattagacaatttta gtgcggaaaaacggaatttagcaaaaaaatttgcggaatttcggaattNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNgaattttcggtgacggaattttggttcaatttaagacggtttgacgga aattggagaaaaaattgacggaattgcggaatcgggtaccccctgaaacc ctcCCCTAGTAAAGCAActagatttttaaagaaatatataCACAAAAGAT AGCACAATAAACACAGAAGGCCTCAGATACTTTTTATCTTCCAATGCATA ATCCCTTGGAACAACGTTTCAACCAACTCTGAAATTCAttggaaaaaaat cttcttttaaatcatgaacatataaacgactggacatccatctcctctgt atttttgaagataacactgctagcttcgttgccgcctcgttaaaatcatc aaatgaaacaataaattctgatggtatacctcttgggaataccttctcag gcattttaaggcctgtccaaattttccgtaatttttaaacaccaatagca ctcgTCAAGAGGTGTTCATTTATAcgtttttggaagcgtattagggtgta gaatatgaaaagtgctgttcgataattcttttgtttgcctaaataaagat acatggataaataatgcaaaaatgtaaaaatgctgacgtcagcaaaactt atttcttaaataacttttgattggcttaattctagatgctgaaattttgg agaatgcaagagaatattgaaaagcacattttggatcaaagttttttttt gaaatttgatgacgtcagcaaaaataagtaaaaaacgcatttttgcgaaa atatgctgacgtcagcaaaatttcaaaatatttttgatttaaaatgtgCC TATTCATAATATCCtactttggttaaaatttcagcatctaaagttaagcc aatcaaaacttattcaaaaaataagttttgctgacgtcagcatttttaca ttttttgcaatatttattcatatatctttatttaggcaagcaaaacaatt attgaacagcacttttcatattctacacTNcaaaaaggtatgaatgaaca cctcttggcgagtgctattggtgtttaaaaattacagaaaatttggacat gccttaaaaTGCCTGANNNNNNNCAaaatttcgacaaaagtctttgttgt tctacttttctcaagtcttttatctatatcataacaaagataacagaggc aaaatcatcgtcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGagttga aaaagttgataaaatatattgcaaactcgtgaaaaaatttgaaaataatt tttttgtgcattaggagtaatgttcaagctctatcaatcatttaactaaa ataattcaaagaaataaaattacgacggaatattgtcggattttttatag caattttgaaatacaggcggcaacgaagctcgcttcaaagagacaataaa agatagatgtccagtcgtttatatgttcatgtttAAATACATAGCATTTG GATCATTAAGCCTCTtttcacccctgtatcacagacccggtggcATCCCA CTCAGTGGAATTAAAAGATAAATACAGTACAGACTTAACTTAACTTTGCC CAAAGTTTGGCTATCTCATTCTGATCCCATATTACAGATACATGGGTGGC TTTGATTGTGTATGGATAAATGCCTAAGGCTTGTTAAGAATATCCCAGCG TCGGAGttaaactaaataaaaaatcatggcTTTAAGCCCCTTTTAAGACA AAATGCATgtaaattatgatttttttagaaCGATGTCTTGATGTCTAAAA GCCGTCATTActtttgcaaaaatgttttacaaAATCGTGACGGAAAAGAC GGGAGAGATGGTGAGTAAATCCTTCATGGTAAATCCTTGTGCTTTTCTTA GTTTTCCCCACACAATCAGGCCTAACTCCAAATCGACTCGCTAGTTTGAT TCAAACGGGAAAGACTGCAGAATTTTTTCACCCCGCTGAGGGGAAAGAAT CTACCGGGACACTTACACAGAGGTAAATCTGTCATTCCATCGCCTGTACA ATTTGAATACTGCTCCATTTTGATTAAATATTACGTTGAGAAAAATGCTT CGATGGAAAGAAAACTTGGGGGATTTAACGaattatgttaaaaaaactgc atctaaaaaaaacctttcaacCATCTATAATATCAAATTTCTgtgataaa attattttcaaaacagttTGAAATTACTGTTTAGGAAGGGATGGGAGAGA TGGTATCCGAGGCCCACCTGGAGAAAAAGGGTCTACAGGTCGAGCTGGGA AGGATTGCGATCAACAAATGCAATGGGAACGAATTCAACATAGACCACCA AGCAATGACGGAACTCAAGGATTAACTGGAGAAAAAGGTGATAAAGGTGC TCCTGGAAAAGATGGTGCTCATGGTACCCCTGGTAAGAATCACTTGTAAG ATTGTGTTTATTGAGACTATTCAGTTTACGTTCTCTATGACTCTGTCGAT ACGCTCCATGATGCtaaaagtccccgtcaacaagaaactctaataaacga cgctctactattcggtaggctcccttattcgatgaaaatccaattcccct tgaaaattgtTCTACAGAGCGCTTACTAGTAATCAAGTCGTGCAAAGAAG TAACTAGTAAATACTGTTCATGTTCCAGATGCAAGCAATTTTACACAATT GACGAAAACATCACTTTTGACCCCTCAACATTCATTGTCTTACGATATAT TGGACGAAAAATCAcgtagaaatatttgaaaagcttcaagaaaaaacaat tgcTAAAATAGGTCAAGCAATTTATAGAACAGGATCAAATCTTCTTTAAT CTTCTCTTTATGAATTAATCCAGAATATTGACCAAATGCCTGATTTATAT GCGCCAACCTTTATCTTTTGACCAAGTTTTAATTCTTTATAGGTTTGCCT GGTGTTCCTGGACGGGATGGAATCAATGGCACTATTGGTGAAAAAGGTAA GCTTCCCTCAGCTTCCTTCAGTCAGTTGAGACGTTGGAACAAAAGTAAAA TATATAAAGACCTCCAAGTTTAAATATTTTTCTCAACATCATATAATATG GCCAAGAATTATTTTCTTAAAATTCTATTGTTAACAAATCCATGAGTTAA TTTTTCGGGgggggggggggggtactggggcaaaaagaggtacacgaatg tcagggtaccttttttttcttcccaggtagaaaatattgaagaaaatttg gaatttcagtGCCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagt tttcaaaaaacaacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAG AACACCCCCGTTAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATA TTTCCATACCGGAATGAATGAGAGATTACTTTTACAATACAATGCAATAT AATTGAACAAAACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTC CTGGATTACCCGGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGT AAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTAAAACTGCTCTG TCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGGTAAACcattaa ataaaatttgaaatatgattttcaATTGATATCTTAATTCTAACTCTAAG ATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTCCTTAGGACCTC CTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTGGCAAAAATGGA GCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGAGTAGGAAATTG GAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAACTCGTGGCTTGA TAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcatcaaaaaatata aatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAACCCCCCAATGG TGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTAATGGgttatta aagggacataacagtacttgcgaaatttgtaaacaaactgtatgcagcgg ataaaaaatcaaaccaaatatggctaattttgattgttcaattattttac aagtttgttttttggacacgtgattttaattgttaattttaatgacacgt ggttcgcgcaatgtttacattttattactTTAATGTCTTTTTAAGGACAT TCTTCTTTAAGCATGGAAAGTGTAAAGNGTACACGAatgtcagggtacct tttttttcttcccaggtagaaaatattgaagaaaatttggaatttcagtG CCATTCAGGATCACTTTTTTTCGCAAGTTTTGGctaagttttcaaaaaac aacCGAAAGACCCTACTACTTTCGAACCTCGGACAGCAGAACACCCCCGT TAGTCAGCAACGGGTAATTTTTACTCTACAAGTTATATATTTCCATACCG GAATGAATGAGAGATTACTTTTACAATACAATGCAATATAATTGAACAAA ACTACAAACAACTTCGTTTGATCATATTTTAAGGTTCTCCTGGATTACCC GGAAGAGATGGTGAAAATGGTACTGCTGGTATTCAAGGTAAACTACCTAA GTTTATTAATATTGGTGAATATGGTCTAAAACTGCTCANTGGTACTGCTG GTATTCAAGGTAAACTACCTAAGTTTATTAATATTGGTGAATATAGTCTA AAACTGCTCTGTCAGCAAAATTAGTCTTCTTCTAAATTAATACACTTAGG TAAACcattaaataaaatttgaaatatgattttcaATTGATATCTTAATT CTAACTCTAAGATTTGGTTGATCTGATACTACGCCAACCATTTGTTTTTC CTTAGGACCTCCTGGTGAATCTGGACGGAATGGAACAGATGGGAAACCTG GCAAAAATGGAGCTCCTGGAATCCCTGGAGAAGATGGAAATCCAGGAAGA GTAGGAAATTGGAAGGAATGCAAATGGAATAATATCCAAGATTCGAGAAC TCGTGGCTTGATAAAAGTACGTTTAGCCAGTTACTGCTACTAATAagcat caaaaaatataaatctaaGTATGGAATTCTATGATCGTAGAAGTGTGTAA CCCCCCAATGGTGATCCAAAACTTCAAAAAGCCTGGTGTAAAATGGGTTA ATGGgttattaaagggacataacagtacttgcgaaatttgtaaacaaact gtatgcagcggataaaaaatcaaaccaaatatggctaattttgattgttc aattattttacaagtttgttttttggacacgtgattttaattgttaattt taatgacacgtggttcgcgcaatgtttacattttattactTTAATGTCTT TTTAAGGACATTCTTCTTTAAGCATGGAAAGTGTAAAGTTtattgtacag ggtgtccctaataaaagtatcgagtttgaacatgcgattgagtagaaagt tttaagtgtgtattcacaaaattgtattttaagctctccctctNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgagaaaaacgcaacaat taaaacatgtttgtaaagaatcgtatgtaaaactatgaaaataataaaaa tggaatgtatggaacaataaaaaagtaaaactaggcatttatgcaacagg ggaatagtaaaaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATGGTTCTC CAAATGGTAAATGATCAAATGAAACTCTTCCCAGAGGTTGCACCTTTCTA GTGGGCGTAATTTCAGGGAATCTTTTAGtgaagaatttttgaaaactgca agtgatttttaagtgctttaaagtaagGTTTGAAGTAGAGTTTtgacatg agacttaagacttaagactttaagatctcaggatctaaaaactcaaaaat tttctagtaAGGCTGAAAATATAGCCTgaaagccacttaacccctctcAA ATAGAAAAACTCAATGAAACAAAGGGAGGGAGGTACTGAAATCGCAGttc tcgcccgagctttaaattttgacaaattttgaaataccCAAAAGTGCCAC TATATTTCGGTAAAGATTGGGAATGTATAATTATTCGGAATTTACTTTTA ATTCGTAGGAATGCAGCTTTGTTAAGAAGTACCCACATACATATGTTAAA GTTACAGTTGTAACAAATGTCCACATTAGAAGCAATACAGGAAAAAGATG GTTCGTTACTTTCGATAACAAAGAATGCAGTCATCAAACTCCTATTGGTC TTTTTGTTAGTAATGTTACTGGTTTTACGCCGTTTTATTTGACTGGATCG TGTCTGGTGAACAAAACAGGAATTGTGTTGATTGGTTTTCATGTTCAAAA TGGTAGCGTTGTTGCGTATACAGGACACGGAAATTCTTCAACTAATATTA TCATTGAAGAAGTTATTCCACCACAAGCTTAAAGATGTAACAgtttttat ttctaaatttaaaaaactcTACAACTCAcgctctaattcgattttcatcg aataagggagcgtatcgaatagtagagcgtcgtttatgagtgTTCCTTTT TGACGGaggctttcaatattatcgaataatggagcgtatgaataatagaa cgtcgaattagagtgtcaactgtatattcatatttacataaatactctac cattttattttattcacaGTCCAATTAAAAAGCTGCAGAAGAAACCGAAG AAATATTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001541XLOC_001541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002825-exon-sc0000023-1491911889:772285..772452TCONS_00002825-exon-sc0000023-1491911889:772285..772452Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1510915933:772285..772452TCONS_00002825-exon-sc0000023-1510915933:772285..772452Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1575043694:772285..772452TCONS_00002825-exon-sc0000023-1575043694:772285..772452Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1491911889:775013..775094TCONS_00002825-exon-sc0000023-1491911889:775013..775094Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1510915933:775013..775094TCONS_00002825-exon-sc0000023-1510915933:775013..775094Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1575043694:775013..775094TCONS_00002825-exon-sc0000023-1575043694:775013..775094Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1491911889:775469..775666TCONS_00002825-exon-sc0000023-1491911889:775469..775666Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1510915933:775469..775666TCONS_00002825-exon-sc0000023-1510915933:775469..775666Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1575043694:775469..775666TCONS_00002825-exon-sc0000023-1575043694:775469..775666Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1491911889:776177..776230TCONS_00002825-exon-sc0000023-1491911889:776177..776230Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1510915933:776177..776230TCONS_00002825-exon-sc0000023-1510915933:776177..776230Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1575043694:776177..776230TCONS_00002825-exon-sc0000023-1575043694:776177..776230Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1491911889:776729..776782TCONS_00002825-exon-sc0000023-1491911889:776729..776782Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1510915933:776729..776782TCONS_00002825-exon-sc0000023-1510915933:776729..776782Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1575043694:776729..776782TCONS_00002825-exon-sc0000023-1575043694:776729..776782Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1491911889:778140..778300TCONS_00002825-exon-sc0000023-1491911889:778140..778300Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1510915933:778140..778300TCONS_00002825-exon-sc0000023-1510915933:778140..778300Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1575043694:778140..778300TCONS_00002825-exon-sc0000023-1575043694:778140..778300Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1491911889:779793..780395TCONS_00002825-exon-sc0000023-1491911889:779793..780395Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1510915933:779793..780395TCONS_00002825-exon-sc0000023-1510915933:779793..780395Clytia hemisphaericaexon
TCONS_00002825-exon-sc0000023-1575043694:779793..780395TCONS_00002825-exon-sc0000023-1575043694:779793..780395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:772285..780395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0417331 0.0241042 0.0711789 0.0143855 0.0226995 0 0 0 0.0111521 0.0647869 0 0.00743542 0 0.0364305 0.0324996 0 0.00825251 0.0231209 0.0367485 0.662364 0.575742 0.45335 0.636363 0.999694 0.675873 0.0150421 0.0322535 0.0478099 0.0486522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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