|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002700 ID=TCONS_00002700|Name=TCONS_00002700|organism=Clytia hemisphaerica|type=transcript|length=767bp CCACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGTGGTG AAAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGACGAA AATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAAGTTG CAAGATTAATGAAATCAACGAATGCAAACTTAATTTACACACTTGTCATG CGAATGCGACTTGTATCGATACTCATGAACATTATCAATGTTCTTGCAAA GATGGGTTCATTGGGAATGGAACGATTTGTGAAGattttgatgaatgcAA AGCTGAGGTTGCTCATTGCCCTACGAATTCGACATGTGTCAACCTTATTG GATCATTCGATTGTTTTTGCAACTCTGGTTACCAGAAGTGTGAAAACACG TGCAAAGATGTCGATGAATGTTCGGACCCAGACCTCAATAGATGTCATGC AAAGGCGAAGTGTGAAAACACTATTGGATCTTACATGTGTTTCTGCCAAA AGGGATATTCAGGTGATGGATACCAATGTGGAGATCTCAATGAATGCAGC AACAACTCGATGAATAATTGTCATCAAAATGCTCTTTGTTTGAATACTGA AgGCTCCTATCAATGTTATTGTCAGAAAGGTTTCTACGGGAAtggaagaa aatgttttgatttcaatgaatgttattctCCAACAACTCATAATTGTCAT CAACATTCTAATTGTGTCAACAACATCGGTTCTTATACATGCCAATGTAG GAATGGCTTTATAAAAA Run BLAST on NCBI protein sequence of TCONS_00002700-protein >TCONS_00002700-protein ID=TCONS_00002700-protein|Name=TCONS_00002700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
HDFHFHLCILDEFICGENYTKCHEKALCILDDENSSCQCKQGYIGNGESC KINEINECKLNLHTCHANATCIDTHEHYQCSCKDGFIGNGTICEDFDECK AEVAHCPTNSTCVNLIGSFDCFCNSGYQKCENTCKDVDECSDPDLNRCHA KAKCENTIGSYMCFCQKGYSGDGYQCGDLNECSNNSMNNCHQNALCLNTE GSYQCYCQKGFYGNGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCR NGFIK Run BLAST on NCBI transcript from alignment at sc0000021:592892..598387- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002700 ID=TCONS_00002700|Name=TCONS_00002700|organism=Clytia hemisphaerica|type=transcript|length=5496bp|location=Sequence derived from alignment at sc0000021:592892..598387- (Clytia hemisphaerica) CCACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGTGGTG
AAAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGACGAA
AATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAAGTTG
CAAGATTAATGGCAAGTCGAGCATGTGTTTTGGAATGTATTTCTTTTCAC
GAAATAGACGCCTGGTTTGAACCTCTTTTAACAATTTGGCCCTAAAATTA
AGCTTGACAATTTTTGACAATTTTACCGATTTTTTATTTAATTTATTGAC
AGCTTTTGGAACCAGGCCAAACACTTTAAATTTTCTTTAAACCTTAAAGT
TCAGGCCCGGTGGAACAGCCGTAAAGGTGGGGAGGCTGAAGGCTCAAAAT
GAAATGAAATTCGCTAGAAATTTGAGAAAGAAACCTCATTTGCTCAAAAG
TTGGGAGGCTGAAGTCTCCCCAGTCTCCCCGCTTCCAACGGGCCTGAAAT
TAACGAAATTTGACGGGGATAATAGCCACAATTTTCTATTTCGTTCAACA
GCAAGATTATCGATTATATAAGACAATTGATTTCATTTTTTATTCCTCTC
AGAAATCAACGAATGCAAACTTAATTTACACACTTGTCATGCGAATGCGA
CTTGTATCGATACTCATGAACATTATCAATGTTCTTGCAAAGATGGGTTC
ATTGGGAATGGAACGATTTGTGAAGGTAAGTGTGGATAGTTCATGAGTTT
CACACGTTTTCGTCTTTCTTAGAATTTATAAATGGTGTGGGGACACGTTC
GAGCGAATGTATGTCTTCCTTCTGCGCGGACCTGCCTGAATGATAGAACG
GTGCCCAATAGTAAAACTTCAAACTAATTCGCTAGAGGACAGAATCAAGT
AATGCAGGACCAATTTAGGAGGTTCTTGGATCACTCGTTGACTTTTTGGC
TCAAAATCTTGCTGGAAAGACTCACTTTTGATTTTTTTTGCTTGACCATG
AAACCCAATCCAATTTCTACGAGTTAGACAAAAAATGACGATTTCTAACT
CAAACTGGACATTACAGGAGGGCTTCGTCCTCCTACATAGCCCATGTCTA
GTATACTCGTAATTTGTACTTAAAGGGTTAAAAGTTCACATTATTTCGGA
CACAGTTAGCTATCAAACCTTTATACTTTTTCTGGGTACACCCAGTATGT
GAGTGATTTAAGTACATCTGACACTCTTTTATTCGGTTTTCAAGGGAATC
GGATTTTCATCGAACAAGGGATATGACTGCATCGAATAGTAGAACATCGT
TCATGAGAGTTTCTAGTTGACGTCGACTTTCAATATTATTGCATAGTGGA
GCGTGTCGAATAGTAGAACGCCGAATAAAAGAGCGTCAACTGTATTACAC
CCCTGTGTCACAGACCCACTGGGGAATTGAGTTTGATTTCTTCCCCACTC
GAAATCCGATGTTTTAAAAATTGCACTCCAAAACCATCCCCACTGGATTT
TTTAACTTTGGAACAATATAATTTCTATCCCCATCGGGATTTCAATAGGA
AGTTTTATCCCCACTGAGGAAAAAAGTTCCACCGGGGCTGTGAGACAGGG
GTGTTGTATTGCTAGTTTTTCTTTGATCATTTGACCATAGATTTTGATGA
ATGCAAAGCTGAGGTTGCTCATTGCCCTACGAATTCGACATGTGTCAACC
TTATTGGATCATTCGATTGTTTTTGCAACTCTGGTTACCAGAAGTGTGAA
AACACGTGCAAAGATGTCGATGAATGTTCGGACCCAGACCTCAATAGATG
TCATGCAAAGGCGAAGTGTGAAAACACTATTGGATCTTACATGTGTTTCT
GCCAAAAGGGATATTCAGGTATTGGGCAGAACATGTCTTTTTATAAGAAC
AATTGTATAAGAATAAACAGCTTATATTAAGGACAAATCTAGAGCATTTT
TAGCCTTTTGGACTCTAAAACACCACAATTTTTTAGAAAATCGTAAAAAA
TGATCACAAAATACTTAAAACGTTTTAAGAGCATATTTAGGCTTAACCTT
TCCAGCGCGCAACATTTTTATATCTTCAGCCCGTCTGCGCGCAACGTTTT
TTGATGAAAATACAATTTTCACGATAACCGTTATAACTTTTTGAAAAATT
AACTTCAGAAAAAAACCCTTATATTTTTGGAAAGCCCTACCTTTCCCCTT
TCTAAATATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAAATTATAGAGAACTGAAAAATTGATAAAAACACTTACTTTT
TTCTTTAGAAGGTTTCTTTATAGTTAGGTAATACAATTCCATACTTTTGA
AAAGCCAAATTAAACTCTAAAACACTTTTATAAACCCTTACTTTCATAGC
TAACTTTCTGCCTCCTCCAAAATCACGCAACACAGCTTGGTCTACCATTT
CTATTTTTGAAAAATGTTGCGTCATACCAAAACAAACCCCGATTGTTTCT
TATCGGAAATTTCACGCTGATTCCGATTTTTTAATCGGTTTTACCGTACC
TCTGACGGTTGGGGCGTAATCCGACCAAATATAAAGGTCACCTTAAAAAC
GTATCAGATACGTCTTTCGGAACGTATGGCGAACGTATCAGATACGTCTT
TCGGAACGTATGGCGAACGTATCAGATACGTCTTTCGGGGCGGAAAGGTT
AAAACTAAAAAAGATAAGAAAATCTGAAGGTTTCGAAAACCTTTGACGTT
CTTATAAAAAAAATTGTAATGCTCAATGAACAATGGTAACCCCCCCCAGA
TACCAAGGTGAAGTTATAAGCTTACTTTTACGAAAGATTAGCCTATACAT
CACAGCTTTTTTTCTTACACAGTAACGCACGTCTGTTCCACTTTACGATT
TTTTCGAATGTTTGGAGCCCAGGTTTTCGTACCGTGAGTATCACAGCTCG
AATAAATTCGATAATTAATATTTTCTCTTTGAAAACTTGACCTCTGATAC
TCAGGGTAAGGTTTTCGGGCTCTGAATATTCGATTGTTTGACGTCACTTT
ATGCTTTTTAAGTCCTCATAGTAGCGAAAAAATCGAATATGAATCAAAAC
ACCTGAAGACAGGCTTTCGAAAAGACTTATAGTGTAACTCACTCAAAAAA
CGGAATAAAAAATCCTTTTGATAACGTAATCGTGGCGTAATCGCTATCCA
ATGACGTGATTTAGTCAATTCTGTAAACCGATCCAACGTTATCTTTTGCA
CCCATATTAGCGAGGAGCATGGGAGAAAGAATAACATGATTATTTGGTAA
CACTATTTAGTTAGAAAATTTGGTAGAAATTCCGTCCCCGGTGGGGAAAA
TACCCTAGAATTTTAGCCCCGCTGAGAAAATTTCTTTAATTTCACCCCCA
TTTGAAATTAAATGTTGCACTCCAAAACCGTCCTGCTGGATTTTTTAACC
TTGGTACAATAGACTTTTCATCCCGATTGGGATTTCAGTAAGAAATCTTT
ATCTCCGCTTGCGGGAAATAGATCCACCGGGGCTTGTGAGACAGGGTGTA
TTTACCCTTCACTTAGAATCACTGATTGAATCTAGCGCTTTCTTTGATTT
CACGCACATTTTCGATGGAAAATAAGTGACCTCATTTTCCATTTAAAAGT
TTCATCTCTAGCTCCTTCAGGGCTTTGAACTTAATAGACAACACTTTATA
CTCAGCTAGCAGATGTTGTATCATTTTAAGAATGAAGAGGATTGATTAGT
AACACCATGCAGTTTAAAACTGGAAGGGGTAGATTGGAATCTCCAACCAT
TCCCAAGCAAAAAAAGCGAAGCCTTAAGATTTATTCAGCACTTAGAATAG
TGGATTGAATCTAGCGCTTTCTTTGATTTCACACACGTTTCCGATGGTAA
ATAAGTGACCTCATTTTCCATTTAAAAGTTTCATCTCTAGCTCCTTCAGG
GCTTTGAACTTAATAGACAACACTTTATACTCAGCTAGCAGATATTGTAT
CATTTTCTGTGCGAAAAGTAACGGGATTAAAGTATGCCACAACGAATTAG
ACCTGATATCTACAAAAATTTCTAAATTCATTGACGTACTAAGCTATGTT
ATACGCGAAATACACTCTTGTATATAAAGTACAACGAACTGTATTTGTTT
ATTTTCTCCTTACTAGGTGATGGATATCAATGCGCATTTAGGATAGGAAA
TAAGTGACCATCCAAGAGTTTTATCCCTAGCTCCTTTGGGCTTTAATTAT
GTCACAACAAACTGTATCGGGTTTTCTCCTTTCTAGGTGATGGATACCAA
TGTGGAGATCTCAATGAATGCAGCAACAACTCGATGAATAATTGTCATCA
AAATGCTCTTTGTTTGAATACTGAAGGTAACACCCCTGTCTCACAGCCCT
GGTGGAATTTTTTCCAGAGTTGGGATAAAAATTCCTCTTGAAATCCCGAT
GGGGATAGAAATTCTATTGTTCCAAAATCCAGTGGGGGTGGTGTTGGAGT
GCATATTTTAAACATTGAATTTTGAGTGGGAATGAAATCAAAGTCAATTT
CTCAGTGTGACTAAATTTCCAGGGTATTTTCCCACCGGGTGCAAAATATT
TGCCAAATTTTCCAGTGTGGCTGGGGGTACCAGCGGGTATTTCTGTCTAC
CGTGAGTGGTGAGTATCACAATGTATAAATCTAGACTGTTATAGCGAATC
GAAGTAAAGTTTAGTGCCTATGACAATAAATGATACAGAAATCTCGTCAA
AGTTCAGAAAAAAGGTTTTCAGAGCATTAATTTTAGAATCTCTTTTATTT
CTATTTCCCGCAATAAGTAGTAGAGTGCAAACTGTTCTTGCCCTCGCTTT
GATTGGACGATCTCTATCGGATAGTACTTTCATCGTACAAGGGTGTTAAC
AAAATATTAGTAATTTTTAGGTTTTGCTTCTTCGATCCTAGTTCCAAGCG
TTAAAGATTCAAATAATAACTTTTTCTTCAGGCTCCTATCAATGTTATTG
TCAGAAAGGTTTCTACGGGAATGGAAGAAAATGTTTTGATTTCAATGAAT
GTTATTCTCCAACAACTCATAATTGTCATCAACATTCTAATTGTGTCAAC
AACATCGGTTCTTATACATGCCAATGTAGGAATGGCTTTATAAAAA Coding sequence (CDS) from alignment at sc0000021:592892..598387- >TCONS_00002700 ID=TCONS_00002700|Name=TCONS_00002700|organism=Clytia hemisphaerica|type=CDS|length=3825bp|location=Sequence derived from alignment at sc0000021:592892..598387- (Clytia hemisphaerica) GCTCCTATCAATGTTATTGTCAGAAAGGTTTCTACGGGAATGGAAGAAAA TGTTTTGATTTCAATGAATGTTATTCTCCAACAACTCATAATTGTCATCA ACATTCTAATTGTGTCAACAACATCGGTTCTTATACATGCCAATGTAGGA ATGGCTTTATAAAAGTGATGGATACCAATGTGGAGATCTCAATGAATGCA GCAACAACTCGATGAATAATTGTCATCAAAATGCTCTTTGTTTGAATACT GAAGATTTTGATGAATGCAAAGCTGAGGTTGCTCATTGCCCTACGAATTC GACATGTGTCAACCTTATTGGATCATTCGATTGTTTTTGCAACTCTGGTT ACCAGAAGTGTGAAAACACGTGCAAAGATGTCGATGAATGTTCGGACCCA GACCTCAATAGATGTCATGCAAAGGCGAAGTGTGAAAACACTATTGGATC TTACATGTGTTTCTGCCAAAAGGGATATTCAGAAATCAACGAATGCAAAC TTAATTTACACACTTGTCATGCGAATGCGACTTGTATCGATACTCATGAA CATTATCAATGTTCTTGCAAAGATGGGTTCATTGGGAATGGAACGATTTG TGAAGCACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGT GGTGAAAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGA CGAAAATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAA GTTGCAAGATTAATGGCTCCTATCAATGTTATTGTCAGAAAGGTTTCTAC GGGAATGGAAGAAAATGTTTTGATTTCAATGAATGTTATTCTCCAACAAC TCATAATTGTCATCAACATTCTAATTGTGTCAACAACATCGGTTCTTATA CATGCCAATGTAGGAATGGCTTTATAAAAGTGATGGATACCAATGTGGAG ATCTCAATGAATGCAGCAACAACTCGATGAATAATTGTCATCAAAATGCT CTTTGTTTGAATACTGAAGATTTTGATGAATGCAAAGCTGAGGTTGCTCA TTGCCCTACGAATTCGACATGTGTCAACCTTATTGGATCATTCGATTGTT TTTGCAACTCTGGTTACCAGAAGTGTGAAAACACGTGCAAAGATGTCGAT GAATGTTCGGACCCAGACCTCAATAGATGTCATGCAAAGGCGAAGTGTGA AAACACTATTGGATCTTACATGTGTTTCTGCCAAAAGGGATATTCAGAAA TCAACGAATGCAAACTTAATTTACACACTTGTCATGCGAATGCGACTTGT ATCGATACTCATGAACATTATCAATGTTCTTGCAAAGATGGGTTCATTGG GAATGGAACGATTTGTGAAGCACGATTTCCATTTTCACTTGTGTATTTTA GATGAATTTATTTGTGGTGAAAATTATACTAAATGTCACGAAAAAGCACT ATGCATATTAGATGACGAAAATTCCTCATGTCAATGCAAACAAGGATATA TTGGAAATGGTGAAAGTTGCAAGATTAATGGCTCCTATCAATGTTATTGT CAGAAAGGTTTCTACGGGAATGGAAGAAAATGTTTTGATTTCAATGAATG TTATTCTCCAACAACTCATAATTGTCATCAACATTCTAATTGTGTCAACA ACATCGGTTCTTATACATGCCAATGTAGGAATGGCTTTATAAAAGTGATG GATACCAATGTGGAGATCTCAATGAATGCAGCAACAACTCGATGAATAAT TGTCATCAAAATGCTCTTTGTTTGAATACTGAAGATTTTGATGAATGCAA AGCTGAGGTTGCTCATTGCCCTACGAATTCGACATGTGTCAACCTTATTG GATCATTCGATTGTTTTTGCAACTCTGGTTACCAGAAGTGTGAAAACACG TGCAAAGATGTCGATGAATGTTCGGACCCAGACCTCAATAGATGTCATGC AAAGGCGAAGTGTGAAAACACTATTGGATCTTACATGTGTTTCTGCCAAA AGGGATATTCAGAAATCAACGAATGCAAACTTAATTTACACACTTGTCAT GCGAATGCGACTTGTATCGATACTCATGAACATTATCAATGTTCTTGCAA AGATGGGTTCATTGGGAATGGAACGATTTGTGAAGCACGATTTCCATTTT CACTTGTGTATTTTAGATGAATTTATTTGTGGTGAAAATTATACTAAATG TCACGAAAAAGCACTATGCATATTAGATGACGAAAATTCCTCATGTCAAT GCAAACAAGGATATATTGGAAATGGTGAAAGTTGCAAGATTAATGGCTCC TATCAATGTTATTGTCAGAAAGGTTTCTACGGGAATGGAAGAAAATGTTT TGATTTCAATGAATGTTATTCTCCAACAACTCATAATTGTCATCAACATT CTAATTGTGTCAACAACATCGGTTCTTATACATGCCAATGTAGGAATGGC TTTATAAAAGTGATGGATACCAATGTGGAGATCTCAATGAATGCAGCAAC AACTCGATGAATAATTGTCATCAAAATGCTCTTTGTTTGAATACTGAAGA TTTTGATGAATGCAAAGCTGAGGTTGCTCATTGCCCTACGAATTCGACAT GTGTCAACCTTATTGGATCATTCGATTGTTTTTGCAACTCTGGTTACCAG AAGTGTGAAAACACGTGCAAAGATGTCGATGAATGTTCGGACCCAGACCT CAATAGATGTCATGCAAAGGCGAAGTGTGAAAACACTATTGGATCTTACA TGTGTTTCTGCCAAAAGGGATATTCAGAAATCAACGAATGCAAACTTAAT TTACACACTTGTCATGCGAATGCGACTTGTATCGATACTCATGAACATTA TCAATGTTCTTGCAAAGATGGGTTCATTGGGAATGGAACGATTTGTGAAG CACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGTGGTGA AAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGACGAAA ATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAAGTTGC AAGATTAATGGCTCCTATCAATGTTATTGTCAGAAAGGTTTCTACGGGAA TGGAAGAAAATGTTTTGATTTCAATGAATGTTATTCTCCAACAACTCATA ATTGTCATCAACATTCTAATTGTGTCAACAACATCGGTTCTTATACATGC CAATGTAGGAATGGCTTTATAAAAGTGATGGATACCAATGTGGAGATCTC AATGAATGCAGCAACAACTCGATGAATAATTGTCATCAAAATGCTCTTTG TTTGAATACTGAAGATTTTGATGAATGCAAAGCTGAGGTTGCTCATTGCC CTACGAATTCGACATGTGTCAACCTTATTGGATCATTCGATTGTTTTTGC AACTCTGGTTACCAGAAGTGTGAAAACACGTGCAAAGATGTCGATGAATG TTCGGACCCAGACCTCAATAGATGTCATGCAAAGGCGAAGTGTGAAAACA CTATTGGATCTTACATGTGTTTCTGCCAAAAGGGATATTCAGAAATCAAC GAATGCAAACTTAATTTACACACTTGTCATGCGAATGCGACTTGTATCGA TACTCATGAACATTATCAATGTTCTTGCAAAGATGGGTTCATTGGGAATG GAACGATTTGTGAAGCACGATTTCCATTTTCACTTGTGTATTTTAGATGA ATTTATTTGTGGTGAAAATTATACTAAATGTCACGAAAAAGCACTATGCA TATTAGATGACGAAAATTCCTCATGTCAATGCAAACAAGGATATATTGGA AATGGTGAAAGTTGCAAGATTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002700-exon-sc0000021-1575043694:598227..598387 | TCONS_00002700-exon-sc0000021-1575043694:598227..598387 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1575043694:597663..597785 | TCONS_00002700-exon-sc0000021-1575043694:597663..597785 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1575043694:596520..596747 | TCONS_00002700-exon-sc0000021-1575043694:596520..596747 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1575043694:593662..593751 | TCONS_00002700-exon-sc0000021-1575043694:593662..593751 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1575043694:592892..593056 | TCONS_00002700-exon-sc0000021-1575043694:592892..593056 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1510915933:598227..598387 | TCONS_00002700-exon-sc0000021-1510915933:598227..598387 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1510915933:597663..597785 | TCONS_00002700-exon-sc0000021-1510915933:597663..597785 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1510915933:596520..596747 | TCONS_00002700-exon-sc0000021-1510915933:596520..596747 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1510915933:593662..593751 | TCONS_00002700-exon-sc0000021-1510915933:593662..593751 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1510915933:592892..593056 | TCONS_00002700-exon-sc0000021-1510915933:592892..593056 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1491911889:598227..598387 | TCONS_00002700-exon-sc0000021-1491911889:598227..598387 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1491911889:597663..597785 | TCONS_00002700-exon-sc0000021-1491911889:597663..597785 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1491911889:596520..596747 | TCONS_00002700-exon-sc0000021-1491911889:596520..596747 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1491911889:593662..593751 | TCONS_00002700-exon-sc0000021-1491911889:593662..593751 | Clytia hemisphaerica | exon |
TCONS_00002700-exon-sc0000021-1491911889:592892..593056 | TCONS_00002700-exon-sc0000021-1491911889:592892..593056 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000021 | supercontig | sc0000021:592892..598387 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00002700 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 6.798e-39 Identity = 85/227 (37.44%), Postives = 112/227 (49.34%), Query Frame = 2
Query: 110 CQCKQGYI--GNGESCKINEINECKLNLHTCHANATCIDTHEHYQC--SCKDGF--IGNGTICEDFDECKAEVAHCPTNSTCVNLIGSFDCFCNSGYQKCENTCKDVDECSDPDLNRCHAKAKCENTIGSYMC--FCQKGYS-GDGYQCGDLNECSNNSMNNCHQNALCLNTEGSYQCYCQKGF--YGNGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCRNG 757
C C +G +G +C+ +I+EC L HTCHA C +T Y+C C GF +G C+D +EC+ P + C N IGSF C C GYQ C DV+EC N C C+NT G Y C C G + + C D++EC + + + C N +C NT GSY+C C +G+ G GR C D NEC HQ C N GS+ C C G
Sbjct: 5130 CSCPKGLTIAADGRTCQ--DIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQES---SPCHQRCFNAIGSFHCGCEPGYQLKGRKCMDVNECRQ---NVCRPDQHCKNTRGGYKCIDLCPNGMTKAENGTCIDIDECKDGT-HQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVPKPCAHQ---CSNTPGSFKCICPPG 5344 HSP 2 Score: 123.635 bits (309), Expect = 5.778e-31 Identity = 77/230 (33.48%), Postives = 107/230 (46.52%), Query Frame = 2
Query: 101 NSSCQCKQGYIGNGESCKINEINECKLNLHTCHANATCIDTHEHYQCSCKDGFI--GNGTICEDFDECKAEVAHCPTNSTCVNLIGSFDCF--CNSGYQKCEN--TCKDVDECSDPDLNRCHAKAKCENTIGSYMCFCQKGYSGDGYQCGDLNECSNNSMNNCHQNALCLNTEGSYQC--YCQKGFYG--NGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCRNGF 760
+ S QC G+ + + +EC H +C + Y CSC G +G C+D DEC C C N IGS+ C C SG+++ + +C+D++EC + + CH + C N IGS+ C C+ GY G +C D+NEC N C + C NT G Y+C C G NG C D +EC TH C + C N GSY C C G+
Sbjct: 5087 DRSNQCPSGFTLDSVGPFCADEDECAAGNPCSH---SCHNAMGTYYCSCPKGLTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQES--SPCHQR--CFNAIGSFHCGCEPGYQLKGRKCMDVNECRQNV---CRPDQHCKNTRGGYKCIDLCPNGMTKAENG-TCIDIDEC-KDGTHQCRYNQICENTRGSYRCVCPRGY 5304 HSP 3 Score: 95.9005 bits (237), Expect = 1.274e-21 Identity = 85/281 (30.25%), Postives = 112/281 (39.86%), Query Frame = 2
Query: 44 CGENYTKCHEKALCILDDENSSCQCKQGYIGNGESCKINEINECKLNLHTCHANATCIDTHEHYQCS--CKDGFIG--NGTICEDFDECKAEVAHCPTNSTCVNLIGSFDCFCNSGY--QKCENTCKDVDECSDPDLNRCHAKAKCENTIGSYMCFCQKGYS--GDGYQCGDLNECSN-----NSMNNCHQNALCLNTE------------GSYQCY-----------------CQKGFYGNGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCRNGF 760
C E+ + CH++ C + C C+ GY G C ++NEC+ N+ C + C +T Y+C C +G NGT C D DECK C N C N GS+ C C GY Q C D++EC H +C NT GS+ C C G GDG C L N +S N + + N + SY Y C +G + C D +EC T C QH C N GSY C C G+
Sbjct: 5196 CQES-SPCHQR--CFNAIGSFHCGCEPGYQLKGRKCM--DVNECRQNV--CRPDQHCKNTRGGYKCIDLCPNGMTKAENGT-CIDIDECKDGTHQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVPKPCAH---QCSNTPGSFKCICPPGQHLLGDGKSCAGLERLPNYGTQYSSYNLARFSPVRNNYQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGSEASHDTCVDIDEC--ENTDAC-QHE-CKNTFGSYQCICPPGY 5461
The following BLAST results are available for this feature:
|