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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002692 ID=TCONS_00002692|Name=TCONS_00002692|organism=Clytia hemisphaerica|type=transcript|length=1272bp CGAGGTCGTTAATAATAACGCCGACTTAATTTTTGCTGCATTAACTATAA ATGCTCAACGATCAAATGTGATTGATTATACTGGACCCTATATGGTTGGC GGAGTCGCAATTGCCACTATGGTTGAGAAATCACTTTTACCTTTCATTAA TTTCGAAGCTTTCAAACCACTCTCAGAACGAATGTGgttattaacttttt taacAATGATTATATCGAGTCTCCTTATCCTTGGTACCGAATATTGTATA GAATCGTGTCTTAAACTTCAAAGATATTCATTCCGACAATCTTTACTATA TGTTGGTGGTTTACTCTTTCAAAGGAGTATTGGTGGTGAAGAACCTGCCT ATTTAGGATCCAGATTCATCTCTTTAACAATAGCGTCCGCCATGTTGgtt attatgacgtcatatacAGCAGTCATGACAGCCAATAAGGTGACTCATAA AACGTCTCTACCAATCACAGGATTCAATGACCcaaaaATTGTTAATCCAA CCAGCTCTTTCACTTACGGTACAATCGCCAACTCTGCTTTCACCAGGATG TTTCGTGAAAGTTCAGATCCTGAATGGAATCGAATGCATCATTTTATGAA GTCGTACAATTTCAAAGACACTAACCAAGCGATTGAAGACCTCAAATCAG GACGATTGAATGCGGTGATTCATGACTACCCTGTCCTGTTCCATTTCCTA TCAAAAGATCCTGGATGTAAGATACGTTTTGCTGGTGAACCAATTAAAGA TGCTGGATATGGTTTAGCAGTCAAGAAAGGGAACCCTTTGAGGGATCGAT TATCAGAGTTAATTATTCATTACCAGGATACTGGAACCATAACATTCCTC AAGAATCGTTGGATGAGCAGCAAATGTGAAGATTCGTTGAATATTCAAAT GAGTGCTCAACAAATGGGTACCACGTTTTTCggtggattgtttttatttg ttgGAAGTGGGATTTGTTTATCTGTTTGTTTATTTCTGACTGAATGTATT TCAGCTGCTGGGAAACGATCAAGGGGTAAAGATACTCTTTCAGGACCTCG AACCATTATTAACCATAATATCATTAACCGAACATTAACCTCTATTCCTG AAGAGAGTTTTAAAGGGGATGAAGATGGTTTAGCACCGAGATCGCTAGCT TTGGATCATTTTCGGAAAGCTGTCAATAAGGAGATGAAATCTCGGCAAGA AGATGGACATTTGGTACTGGGAAACAGCTTGGCCGAGGGAAATATAAATC ATAGTTTTATCATTGAatgaat Run BLAST on NCBI protein sequence of TCONS_00002692-protein >TCONS_00002692-protein ID=TCONS_00002692-protein|Name=TCONS_00002692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
EVVNNNADLIFAALTINAQRSNVIDYTGPYMVGGVAIATMVEKSLLPFIN FEAFKPLSERMWLLTFLTMIISSLLILGTEYCIESCLKLQRYSFRQSLLY VGGLLFQRSIGGEEPAYLGSRFISLTIASAMLVIMTSYTAVMTANKVTHK TSLPITGFNDPKIVNPTSSFTYGTIANSAFTRMFRESSDPEWNRMHHFMK SYNFKDTNQAIEDLKSGRLNAVIHDYPVLFHFLSKDPGCKIRFAGEPIKD AGYGLAVKKGNPLRDRLSELIIHYQDTGTITFLKNRWMSSKCEDSLNIQM SAQQMGTTFFGGLFLFVGSGICLSVCLFLTECISAAGKRSRGKDTLSGPR TIINHNIINRTLTSIPEESFKGDEDGLAPRSLALDHFRKAVNKEMKSRQE DGHLVLGNSLAEGNINHSFIIE Run BLAST on NCBI transcript from alignment at sc0000021:467090..470050- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002692 ID=TCONS_00002692|Name=TCONS_00002692|organism=Clytia hemisphaerica|type=transcript|length=2961bp|location=Sequence derived from alignment at sc0000021:467090..470050- (Clytia hemisphaerica) CGAGGTCGTTAATAATAACGCCGACTTAATTTTTGCTGCATTAACTATAA
ATGCTCAACGATCAAATGTGATTGATTATACTGGACCCTATATGGTTGGC
GGAGTCGCAATTGCCACTATGGTTGAGAAATCACTTTTACCTTTCATTAA
TTTCGAAGCTTTCAAACCACTCTCAGAACGAATGTGGTTATTAACTTTTT
TAACAATGATTATATCGAGTCTCCTTATCCTTGGTACCGAATATTGTATA
GAATCGTGTCTTAAACTTCAAAGATATTCATTCCGACAATCTTTACTATA
TGTTGGTGGTTTACTCTTTCAAAGGAGTATTGGTGGTGAAGAACCTGCCT
ATTTAGGATCCAGATTCATCTCTTTAACAATAGCGTCCGCCATGTTGGTT
ATTATGACGTCATATACAGCAGTCATGACAGCCAATAAGGTGACTCATAA
AACGTCTCTACCAATCACAGGATTCAATGACCCAAAAGTAAGTTTTTTTT
TAATTTTTAAGGTGTGGTTTTATTACATTCCCCTTTAAACGCTGAATAAA
TTAAAAATTTACGTCAGTAAAACCAATAAATAAGTTAAAAGGGAATAATG
AAAATAAAAACCAGAGTTTGTTTAAACCTCATAGGGATTATCCAAAAAGC
AAACCAAAAAAAGCGTGACTTCTAAAAGAAATAAGGATTTTCCTAGAATC
TAGAAGTGACCTTATTTATTAAATAAATCAATTCTTCCATACATCTTGAG
TAAAAGATTTATTAACAGAAGCTGCTTCTGGTTCATTTGGAAATTTATTT
TTCTAAACGTTTCGGCCTCAACCGAAGAGTACCATCATCATAGTAAAAAA
TTTGTTGTAATGAAAATTAGCTATCTGCAAAATGTACAACTTTAAAAGAA
ATTTGAAATAAAGACCTTTTGTATAATTTTTGTCTTTTAAATAAAAATCA
ACTCTAGCACCAGAGTATACCCTATCATTGACTAGTGCGAGCCCTTATTT
TCAGAAAGGGACACACTGAATCATCGAAAGACAATTTTACAATCTTCCTT
TTTCGAATAAGAAATTTGTGTGTTCAACAACATATAGAAATACCATAATA
GTAGCATGATCTACCGAGCTGGAGACCTTGTGTCTTCCGGGGGGACAATT
AAGGTAATTTATGGTAAGTGACTGCGGTTCTTCCCAAAATCCCTTTTTAA
GTGTTGCGATGAGAGAAAGTGCACTGTAAGGGTATAAAAAGTGAGAAAAG
CGAGATTTTGGGCAAAACTTGATCATTTATGTCTTAAACACGCTCAATTT
GGCCAAATTGTATCTGCACTGGAAGGGTCCGATTTTGAAACCCAAATTCT
TAAGTGCATATAGACAGTAGTTTTCAGATATATAGCCCTCACCCTCCGGG
CCTTTGATGCCAAAGTTACGAAGCTCCTAAAATTGATAGAATGTTGATTT
TAGATTGTTAATCCAACCAGCTCTTTCACTTACGGTACAATCGCCAACTC
TGCTTTCACCAGGATGTTTCGTGAAAGTTCAGATCCTGAATGGAATCGAA
TGCATCATTTTATGAAGTCGTACAATTTCAAAGACACTAACCAAGCGATT
GAAGACCTCAAATCAGGGTAAAATTTCATCAACCTTGCATATAAAAGTCA
CCCTAGTATTGCAGACAAGACATGTTATACCCAATTTCGGAATTCTTTTT
TAATATAAAAATCAATGCCCTTAAATTTCACCCCTTTAAAAACTAATTTA
GGCGTTCAAGCAAGAATTTAAAGCAACATCCGTTAAGAACACATTCCTGA
TACCCATTCAACCCCTTCATACATACAAGGCTTCTTTATTTTTTCTTCAC
AAGCTTAATAATTTGCCATTTGACCACAGATATCTTTTATAAAACACTTG
ATAGAGCTACTCTGTATTTTCCAAAACAACAGCAGTCGAAGCAAAATAAT
CTGCAATCTTAGCTAAAAGTAGACCATAGTTTGGCACCGGCAATTTGTTC
AACCAGCCAAAAAAACCTGTATGGCGCAAAGCGACGAGGCATGATATTAA
GACTTGATCGATCAAATTGCCGGCACCGTCTGCTAGAATCTACTTACTAA
AGGTGTCGTATTATTATGCTTCAGCTAGGGTCGGATTAGCTCTACCTATT
ATTTTATATAAAATATCTCTGCATGTGACAGGGATATCTAAAGGGCTACT
TAGACTACACAATATATTGAGGACAACTTTTCAATATATTGCCGCCGGTA
CTAAGCAATATATCGTCAATATATTGCCTCACAATATATTGTGCAGTGTA
TGTAGCTCTTAACATGTATCCTACTTTTCTTTTCTTGTAGACGATTGAAT
GCGGTGATTCATGACTACCCTGTCCTGTTCCATTTCCTATCAAAAGATCC
TGGATGTAAGATACGTTTTGCTGGTGAACCAATTAAAGATGCTGGATATG
GTTTAGCAGTCAAGAAAGGGAACCCTTTGAGGGATCGATTATCAGAGTTA
ATTATTCATTACCAGGATACTGGAACCATAACATTCCTCAAGAATCGTTG
GATGAGCAGCAAATGTGAAGATTCGTTGAATATTCAAATGAGTGCTCAAC
AAATGGGTACCACGTTTTTCGGTGGATTGTTTTTATTTGTTGGAAGTGGG
ATTTGTTTATCTGTTTGTTTATTTCTGACTGAATGTATTTCAGCTGCTGG
GAAACGATCAAGGGGTAAAGATACTCTTTCAGGACCTCGAACCATTATTA
ACCATAATATCATTAACCGAACATTAACCTCTATTCCTGAAGAGAGTTTT
AAAGGGGATGAAGATGGTTTAGCACCGAGATCGCTAGCTTTGGATCATTT
TCGGAAAGCTGTCAATAAGGAGATGAAATCTCGGCAAGAAGATGGACATT
TGGTACTGGGAAACAGCTTGGCCGAGGGAAATATAAATCATAGTTTTATC
ATTGAATGAAT Coding sequence (CDS) from alignment at sc0000021:467090..470050- >TCONS_00002692 ID=TCONS_00002692|Name=TCONS_00002692|organism=Clytia hemisphaerica|type=CDS|length=3807bp|location=Sequence derived from alignment at sc0000021:467090..470050- (Clytia hemisphaerica) ACGATTGAATGCGGTGATTCATGACTACCCTGTCCTGTTCCATTTCCTAT CAAAAGATCCTGGATGTAAGATACGTTTTGCTGGTGAACCAATTAAAGAT GCTGGATATGGTTTAGCAGTCAAGAAAGGGAACCCTTTGAGGGATCGATT ATCAGAGTTAATTATTCATTACCAGGATACTGGAACCATAACATTCCTCA AGAATCGTTGGATGAGCAGCAAATGTGAAGATTCGTTGAATATTCAAATG AGTGCTCAACAAATGGGTACCACGTTTTTCGGTGGATTGTTTTTATTTGT TGGAAGTGGGATTTGTTTATCTGTTTGTTTATTTCTGACTGAATGTATTT CAGCTGCTGGGAAACGATCAAGGGGTAAAGATACTCTTTCAGGACCTCGA ACCATTATTAACCATAATATCATTAACCGAACATTAACCTCTATTCCTGA AGAGAGTTTTAAAGGGGATGAAGATGGTTTAGCACCGAGATCGCTAGCTT TGGATCATTTTCGGAAAGCTGTCAATAAGGAGATGAAATCTCGGCAAGAA GATGGACATTTGGTACTGGGAAACAGCTTGGCCGAGGGAAATATAAATCA TAGTTTTATCATTGAATGAATTGTTAATCCAACCAGCTCTTTCACTTACG GTACAATCGCCAACTCTGCTTTCACCAGGATGTTTCGTGAAAGTTCAGAT CCTGAATGGAATCGAATGCATCATTTTATGAAGTCGTACAATTTCAAAGA CACTAACCAAGCGATTGAAGACCTCAAATCAGGGAGGTCGTTAATAATAA CGCCGACTTAATTTTTGCTGCATTAACTATAAATGCTCAACGATCAAATG TGATTGATTATACTGGACCCTATATGGTTGGCGGAGTCGCAATTGCCACT ATGGTTGAGAAATCACTTTTACCTTTCATTAATTTCGAAGCTTTCAAACC ACTCTCAGAACGAATGTGGTTATTAACTTTTTTAACAATGATTATATCGA GTCTCCTTATCCTTGGTACCGAATATTGTATAGAATCGTGTCTTAAACTT CAAAGATATTCATTCCGACAATCTTTACTATATGTTGGTGGTTTACTCTT TCAAAGGAGTATTGGTGGTGAAGAACCTGCCTATTTAGGATCCAGATTCA TCTCTTTAACAATAGCGTCCGCCATGTTGGTTATTATGACGTCATATACA GCAGTCATGACAGCCAATAAGGTGACTCATAAAACGTCTCTACCAATCAC AGGATTCAATGACCCAAAAACGATTGAATGCGGTGATTCATGACTACCCT GTCCTGTTCCATTTCCTATCAAAAGATCCTGGATGTAAGATACGTTTTGC TGGTGAACCAATTAAAGATGCTGGATATGGTTTAGCAGTCAAGAAAGGGA ACCCTTTGAGGGATCGATTATCAGAGTTAATTATTCATTACCAGGATACT GGAACCATAACATTCCTCAAGAATCGTTGGATGAGCAGCAAATGTGAAGA TTCGTTGAATATTCAAATGAGTGCTCAACAAATGGGTACCACGTTTTTCG GTGGATTGTTTTTATTTGTTGGAAGTGGGATTTGTTTATCTGTTTGTTTA TTTCTGACTGAATGTATTTCAGCTGCTGGGAAACGATCAAGGGGTAAAGA TACTCTTTCAGGACCTCGAACCATTATTAACCATAATATCATTAACCGAA CATTAACCTCTATTCCTGAAGAGAGTTTTAAAGGGGATGAAGATGGTTTA GCACCGAGATCGCTAGCTTTGGATCATTTTCGGAAAGCTGTCAATAAGGA GATGAAATCTCGGCAAGAAGATGGACATTTGGTACTGGGAAACAGCTTGG CCGAGGGAAATATAAATCATAGTTTTATCATTGAATGAATTGTTAATCCA ACCAGCTCTTTCACTTACGGTACAATCGCCAACTCTGCTTTCACCAGGAT GTTTCGTGAAAGTTCAGATCCTGAATGGAATCGAATGCATCATTTTATGA AGTCGTACAATTTCAAAGACACTAACCAAGCGATTGAAGACCTCAAATCA GGGAGGTCGTTAATAATAACGCCGACTTAATTTTTGCTGCATTAACTATA AATGCTCAACGATCAAATGTGATTGATTATACTGGACCCTATATGGTTGG CGGAGTCGCAATTGCCACTATGGTTGAGAAATCACTTTTACCTTTCATTA ATTTCGAAGCTTTCAAACCACTCTCAGAACGAATGTGGTTATTAACTTTT TTAACAATGATTATATCGAGTCTCCTTATCCTTGGTACCGAATATTGTAT AGAATCGTGTCTTAAACTTCAAAGATATTCATTCCGACAATCTTTACTAT ATGTTGGTGGTTTACTCTTTCAAAGGAGTATTGGTGGTGAAGAACCTGCC TATTTAGGATCCAGATTCATCTCTTTAACAATAGCGTCCGCCATGTTGGT TATTATGACGTCATATACAGCAGTCATGACAGCCAATAAGGTGACTCATA AAACGTCTCTACCAATCACAGGATTCAATGACCCAAAAACGATTGAATGC GGTGATTCATGACTACCCTGTCCTGTTCCATTTCCTATCAAAAGATCCTG GATGTAAGATACGTTTTGCTGGTGAACCAATTAAAGATGCTGGATATGGT TTAGCAGTCAAGAAAGGGAACCCTTTGAGGGATCGATTATCAGAGTTAAT TATTCATTACCAGGATACTGGAACCATAACATTCCTCAAGAATCGTTGGA TGAGCAGCAAATGTGAAGATTCGTTGAATATTCAAATGAGTGCTCAACAA ATGGGTACCACGTTTTTCGGTGGATTGTTTTTATTTGTTGGAAGTGGGAT TTGTTTATCTGTTTGTTTATTTCTGACTGAATGTATTTCAGCTGCTGGGA AACGATCAAGGGGTAAAGATACTCTTTCAGGACCTCGAACCATTATTAAC CATAATATCATTAACCGAACATTAACCTCTATTCCTGAAGAGAGTTTTAA AGGGGATGAAGATGGTTTAGCACCGAGATCGCTAGCTTTGGATCATTTTC GGAAAGCTGTCAATAAGGAGATGAAATCTCGGCAAGAAGATGGACATTTG GTACTGGGAAACAGCTTGGCCGAGGGAAATATAAATCATAGTTTTATCAT TGAATGAATTGTTAATCCAACCAGCTCTTTCACTTACGGTACAATCGCCA ACTCTGCTTTCACCAGGATGTTTCGTGAAAGTTCAGATCCTGAATGGAAT CGAATGCATCATTTTATGAAGTCGTACAATTTCAAAGACACTAACCAAGC GATTGAAGACCTCAAATCAGGGAGGTCGTTAATAATAACGCCGACTTAAT TTTTGCTGCATTAACTATAAATGCTCAACGATCAAATGTGATTGATTATA CTGGACCCTATATGGTTGGCGGAGTCGCAATTGCCACTATGGTTGAGAAA TCACTTTTACCTTTCATTAATTTCGAAGCTTTCAAACCACTCTCAGAACG AATGTGGTTATTAACTTTTTTAACAATGATTATATCGAGTCTCCTTATCC TTGGTACCGAATATTGTATAGAATCGTGTCTTAAACTTCAAAGATATTCA TTCCGACAATCTTTACTATATGTTGGTGGTTTACTCTTTCAAAGGAGTAT TGGTGGTGAAGAACCTGCCTATTTAGGATCCAGATTCATCTCTTTAACAA TAGCGTCCGCCATGTTGGTTATTATGACGTCATATACAGCAGTCATGACA GCCAATAAGGTGACTCATAAAACGTCTCTACCAATCACAGGATTCAATGA CCCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002692-exon-sc0000021-1575043694:469564..470050 | TCONS_00002692-exon-sc0000021-1575043694:469564..470050 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1575043694:468434..468597 | TCONS_00002692-exon-sc0000021-1575043694:468434..468597 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1575043694:467090..467710 | TCONS_00002692-exon-sc0000021-1575043694:467090..467710 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1510915933:469564..470050 | TCONS_00002692-exon-sc0000021-1510915933:469564..470050 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1510915933:468434..468597 | TCONS_00002692-exon-sc0000021-1510915933:468434..468597 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1510915933:467090..467710 | TCONS_00002692-exon-sc0000021-1510915933:467090..467710 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1491911889:469564..470050 | TCONS_00002692-exon-sc0000021-1491911889:469564..470050 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1491911889:468434..468597 | TCONS_00002692-exon-sc0000021-1491911889:468434..468597 | Clytia hemisphaerica | exon |
TCONS_00002692-exon-sc0000021-1491911889:467090..467710 | TCONS_00002692-exon-sc0000021-1491911889:467090..467710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000021 | supercontig | sc0000021:467090..470050 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004970 | ionotropic glutamate receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
Blast
BLAST of TCONS_00002692 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.215e-31 Identity = 87/297 (29.29%), Postives = 145/297 (48.82%), Query Frame = 2
Query: 2 EVVNNNADLIFAALTINAQRSNVIDYTGPYMVGGVAIATMVEKSLLPFINFEAFKPLSERMWLLTFLTMIISSLLILGTEYCIESCLKL--------QRYSFRQSLLYVGGLLFQRSIGGEEPAYLGSRFISLTIASAMLVIMTSYTAVMTANKVTHKTSLPITGFNDPKIVNPTSSFTYGTIANSAFTRMFRESSDPEWNRMHHFMKSYNFKDTNQAIEDLKSG--RLNAVIHDYPVLFHFLSKDPGCKIRFAGEPIKDAGYGLAVKKGNPLRDRLSELIIHYQDTGTITFLKNRW 862
+++ A + + +IN RS VID+T P+ + I + P F PL MWL F+ + I+++ + T Y +S L + +SF +L LLF R++ + P RF+ A + +++YTA + A V K ++G +DPK+ +P+ F +GT+ S+ R+S PE MH +M+ YN T +E LK+ +L+A I D +L + +S D CK+ G+P GYG+ + +PL +SELI Y+ G + L ++W
Sbjct: 619 DLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFL--TLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSF-PE---MHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKW 907
The following BLAST results are available for this feature:
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