TCONS_00002692-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002692-protein
Unique NameTCONS_00002692-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002692-protein ID=TCONS_00002692-protein|Name=TCONS_00002692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
EVVNNNADLIFAALTINAQRSNVIDYTGPYMVGGVAIATMVEKSLLPFIN
FEAFKPLSERMWLLTFLTMIISSLLILGTEYCIESCLKLQRYSFRQSLLY
VGGLLFQRSIGGEEPAYLGSRFISLTIASAMLVIMTSYTAVMTANKVTHK
TSLPITGFNDPKIVNPTSSFTYGTIANSAFTRMFRESSDPEWNRMHHFMK
SYNFKDTNQAIEDLKSGRLNAVIHDYPVLFHFLSKDPGCKIRFAGEPIKD
AGYGLAVKKGNPLRDRLSELIIHYQDTGTITFLKNRWMSSKCEDSLNIQM
SAQQMGTTFFGGLFLFVGSGICLSVCLFLTECISAAGKRSRGKDTLSGPR
TIINHNIINRTLTSIPEESFKGDEDGLAPRSLALDHFRKAVNKEMKSRQE
DGHLVLGNSLAEGNINHSFIIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001453XLOC_001453Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002692TCONS_00002692Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR001638Solute-binding_3/MltF_N
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 68..290
e-value: 3.1E-6
score: -10.2
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 60..321
e-value: 2.7E-12
score: 46.7
NoneNo IPR availableGENE3D1.10.287.70coord: 61..188
e-value: 2.0E-9
score: 36.5
NoneNo IPR availableGENE3D3.40.190.10coord: 189..304
e-value: 1.6E-11
score: 43.4
NoneNo IPR availableGENE3D3.40.190.10coord: 1..60
e-value: 3.9E-8
score: 32.4
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 2..63
coord: 171..290
IPR001638Solute-binding protein family 3/N-terminal domain of MltFPFAMPF00497SBP_bac_3coord: 3..289
e-value: 6.4E-19
score: 68.2

Blast
[Close]
BLAST of TCONS_00002692-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.076e-35
Identity = 98/342 (28.65%), Postives = 161/342 (47.08%), Query Frame = 0 
Query:    1 EVVNNNADLIFAALTINAQRSNVIDYTGPYMVGGVAIATMVEKSLLPFINFEAFKPLSERMWLLTFLTMIISSLLILGTEYCIESCL------KLQRYSFRQSLLYVGGLLFQRSIGGEEPAYLGSRFISLTIASAMLVIMTSYTAVMTANKVTHKTSLPITGFNDPKIVNPTSSFTYGTIANSAFTRMFRESSDPEWNRMHHFMKSYNFKDTNQAIEDLKSG--RLNAVIHDYPVLFHFLSKDPGCKIRFAGEPIKDAGYGLAVKKGNPLRDRLSELIIHYQDTGTITFLKNRWMS-SKCEDSLNIQMSAQQMGTTFFGGLFLFVGSGICLSVCLFLTECI 333
            +++   A +   + +IN  RS VID+T P+    + I      +  P   F    PL   MWL  F+ + I+++ +   E+     L      + + +SF  +L     LLF R++  + P     RF+    A   +  +++YTA + A  V  K    ++G +DPK+ +P+  F +GT+  S+     R+S  PE   MH +M+ YN   T   +E LK+   +L+A I D  +L + +S D  CK+   G+P    GYG+ +   +PL   +SELI  Y+  G +  L ++W     C           QMG   F GLF+ +  G  LS+   + E I
Sbjct:  619 DLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSF-PE---MHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHI 954
The following BLAST results are available for this feature:
BLAST of TCONS_00002692-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A2.076e-3528.65Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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