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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002689 ID=TCONS_00002689|Name=TCONS_00002689|organism=Clytia hemisphaerica|type=transcript|length=2318bpRun BLAST on NCBI protein sequence of TCONS_00002689-protein >TCONS_00002689-protein ID=TCONS_00002689-protein|Name=TCONS_00002689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp MRGQVLLLFTLCCLSAVIQAKHLSQRGILKDLQKEVVELKEMVRDMESKRRun BLAST on NCBI transcript from alignment at sc0000021:420528..435622- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002689 ID=TCONS_00002689|Name=TCONS_00002689|organism=Clytia hemisphaerica|type=transcript|length=15095bp|location=Sequence derived from alignment at sc0000021:420528..435622- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:420528..435622- >TCONS_00002689 ID=TCONS_00002689|Name=TCONS_00002689|organism=Clytia hemisphaerica|type=CDS|length=24120bp|location=Sequence derived from alignment at sc0000021:420528..435622- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002689 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 1.562e-26 Identity = 84/238 (35.29%), Postives = 117/238 (49.16%), Query Frame = 3
Query: 432 EINAELG---YEGDEMILSEEQRKRGVGLNIRLWRNSQGIIHIPYEIDSSITNANNRAKIERHIREMNAAIKCNANAWKPRTNADQHFVRFRDGSGCSSYLGIAKVFAEGGKTYQPITLASGCIAFNQGTVLHEMLHCMGFSHEQSRSDRDKYVTINTENINPRAIRNFNKLSNMVQASLNTQYDYGSVMHYHSTAFSINRQPTIVAKEPNVE--FGQRNGMSPTDIKEMNDVYQCSN 1130
+IN LG +EGD + + R +G R W ++ IPY ++ S+ N + I + W TN ++ GSGC S +G +V GK Q +++ + C TV HE LH +GF HEQSRSDRD YV I + I NFN S+ + SLN YDY SVMHY TAF +PTIV + + E GQR S +D+ ++N +Y CS+
Sbjct: 39 DINEGLGLDLFEGDIRLDRAQIRNSIIGEKYR-WPHT-----IPYVLEDSL-EMNAKGVILNAFERYRLKTCIDFKPWAGETN----YISVFKGSGCWSSVGNRRV----GK--QELSIGANCDRI--ATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSS 257 The following BLAST results are available for this feature:
BLAST of TCONS_00002689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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