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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002593 ID=TCONS_00002593|Name=TCONS_00002593|organism=Clytia hemisphaerica|type=transcript|length=2773bp
ACCTATACCCGCAACAtgtctctaatcttaattttaataaaacgaGCCTC
TAAGTATTCAATCAAATTGGTAACATAATCTGTCAGTTATCTATCATGTT
CACAATTAAGAATTTTGGCTGTTTGGGAACACAATATTTTTTATACCCTA
AaggtttttcattcaaaaaaatattcttttcttaGGACATACAACAAGTT
AAAGTTCAAGTACAATACAAAATGTGTGGCATTTTCTGCAAAATCTGCAA
AAGGCTTGAAGTCAAAACAAAGCCTATTGATGATAATATCATACCTCTTA
TTCAAAATCGTGGTCCAGATAGTTGTCAATCATTGACACGCATTGTCAAG
GTTGGATCAGATGAATTGGAACTAACATTTTGTAGTACAGTTCTACACTT
ACGAGGAGAGAGTGTTACCAAACAACCATTAATAAATTCAAATGGTGATG
TTTTGTTGTGGAATGGTGAGATATTTGGTGGACTTGATGTTGGACTACAT
GAAAATGATACTGAAATCCTCATGCGACATTTGACCGCAATCTCTCAAGA
AATGCTTGAAAATGTTGAACCAGCTGAAAAGAATATGGCTGATTTGTTTA
CAAAGATACAAGGTCCGTGGGCTTTtgtattttatcaaaaatcactgAAT
AAACTCTGGTATGGTAGAGATTATTTTGGTAGAAGAAGTCTTATACAATC
TTCTATTGATGGTAATTTCCTGCTAACATCAGCTATTTGTGGAGATTTTA
GAGAAGAAAGTGAGGAAATCAAAGCTAAGAGTATTTATTGTTTGAATCTT
GTTGATTTGAAAATTGATGATTTGTCATTGCCAGCTTTTAAAGAAGCAGC
AAAAccgtttgaaataaaaatactgCCTCCAAAACCCAACAAGCACTCTC
TTCTTGGATCTATACATAGATGTACAATTAATTACCCTCCAAgcgaaaat
aaaatttcagaGGGGTTAGAACATTTGGCAAATATCACTTGCTTTGAGAA
CGACTCAACGATAGATTTAGCTGACTGTGTTGGGAATCTTTCAATCAATG
ACAGTTCTATAGAAAAAATACAGGAAcaatttttacaagttcttaGTGAC
TCAGTTCGAACTCGAGTTGAAACCATCCCTCGACCACTTTTGCAAGATGG
TAATCCAGAAACAAGTCTTGGAATCCTTTTTTCAGGAGGGATTGACTCTG
TAGTTTTGGCAGCTCTTGCTCATAGACATGTTCCCCCAAATGAAAGTATT
GATCTTATCAATGTCGCTtttgaagagaaaaagaaaatacctcaaaatat
gaaaaagaagtATGCTAATAAACCTGGTAATGATAATACTGATGTTAAAA
GTTTTAATGTTCCTGATCGATTGACAGGAAAAGAAGCTGTTAAGGAACTG
CCAGAGGATCGACAATGGAATTTCATTGAAGTAGACGTCACTTTAGAGGA
ACTACAAGCTGAAAGAAAATCTCGCATAAATGATCTTGTATGTCCCTTAA
ATACTGTTCTTGACGATAGCATTGGTTGTGCCATCTGGTTCGCTGCTAGA
GGTATGGGAAAGAGGTATGGTTTGAATGATGAAAATGAGCTGGAACTTGT
AGATGAATGTTacaaatcgaaagtgaaagtattATTTACAGGAATGGGTG
CGGACGAACAGCTTGGTGGGTACGCTAGACACCGCACAAAGTATGAGCAT
GGCGGTTGGACTGCATTACGTAACGAAATGAAAATGGAAGTGGATAGAAT
TTCTTCTCGTAATTTAGGTCGAGATGATAGATGCATTTCAGATCATGGGC
GTGAAACTCGTTTTCCatttttggatgaaaatgtTGTTAGGTTTTTGGAT
TCACTTCCGGTTTGTGTTAAAAGTGATCCAAGATTGGAACGAGGTTATGG
GGAGAAAATTCTTTTACGTGAAGTGGCTGAACATCATTTAAAGTTGAATT
TCGCTAGTCGATTACCTAAACGTGCAATTCAATTTGGTTCGCGTATTGCT
AAGCTGGAAAGTGGgaaagaaaaaggaagtgaAAAGTGTGAACGTTTGAA
ATAACAATCACGATCTCTAAATTTATCTTACATTTTAACCATTTGTaaat
cattttataatttttatactttatttttgaatttatcaAAGAATCAAAAG
TGACCGTCTCGTATGTcttgaaatttcttgaaattgttGCAATTATGTGT
TTTCTCTCTTGAAAAACCTTCTTTAAataaacaaacatcaatttcTATAT
TCTTATGTCTTCACCAGAAAATACGTACtagaaaaatgagtaaaaactAT
AACAACAAAATTCAAATCCAATTCAAGAGAGGTGGACTTGAATCAAATTT
ATCACCCTTTCAACGAACTGTTGGATCAACTGAGAGTTCATTACCCAAAT
TCCACACAGACGAaagtgaaaagaaatatttacaatcaGCCCCCACAGCA
CCTGTTGAGGATGACGACCTTTACGATCCTTTCAACCCTTCTGATGAAGC
GGAGCCAGAACCAGAACCGGTTGAAGCGCcacctaaaaagaaaaagaaac
gaaAATCACGATGGGACATGGATGACGAAGCCTCTGACAAATCAATTGTT
GAAGATTTATTGAAGAAATCCACAGTGGACGATCAGATCTCCTCTGTGGT
CGCCAAACAAGAAGCCGCAAGACAAGATGAAATGAGCGATGAAGATGAAC
TAGATAAATTCATGGCTGGAATTGAGGAGACactggaaaaagaagaaact
gacagaaaatccaagaaaaagta Run BLAST on NCBI transcript from alignment at sc0000021:24130..29675+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002593 ID=TCONS_00002593|Name=TCONS_00002593|organism=Clytia hemisphaerica|type=transcript|length=5546bp|location=Sequence derived from alignment at sc0000021:24130..29675+ (Clytia hemisphaerica)
ACCTATACCCGCAACAtgtctctaatcttaattttaataaaacgaGCCTC
TAAGTATTCAATCAAATTGGTAACATAATCTGTCAGTTATCTATCATGTT
CACAATTAAGAATTTTGGCTGTTTGGGAACACAATATTTTTTATACCCTA
AaggtttttcattcaaaaaaatattcttttcttaGGACATACAACAAGTT
AAAGTTCAAGTACAATACAAAATGTGTGGCATTTTCTGCAAAATCTGCAA
AAGGCTTGAAGTCAAAACAAAGCCTATTGATGATAATATCATACCTCTTA
TTCAAAATCGTGGTCCAGATAGTTGTCAATCATTGACACGCATTGTCAAG
GTTGGATCAGATGAATTGGAACTAACATTTTGTAGTACAGTTCTACACTT
ACGAGGAGAGAGTGTTACCAAACAACCATTAATAAATTCAAATGGTGATG
TTTTGTTGTGGAATGGTGAGATATTTGGTGGACTTGATGTTGGACTACAT
GAAAATGATACTGAAATCCTCATGCGACATTTGACCGCAATCTCTCAAGA
AATGCTTGAAAATGTTGAACCAGCTGAAAAGAATATGGCTGATTTGTTTA
CAAAGATACAAGGTCCGTGGGCTTTtgtattttatcaaaaatcactgAAT
AAACTCTGGTATGGTAGAGATTATTTTGGTAGAAGAAGTCTTATACAATC
TTCTATTGATGGTAATTTCCTGCTAACATCAGCTATTTGTGGAGATTTTA
GAGAAGAAAGTGAGGAAATCAAAGCTAAGAGTATTTATTGTTTGAATCTT
GTTGATTTGAAAATTGATGATTTGTCATTGCCAGCTTTTAAAGAAGCAGC
AAAAccgtttgaaataaaaatactgCCTCCAAAACCCAACAAGCACTCTC
TTCTTGGATCTATACATAGATGTACAATTAATTACCCTCCAAgcgaaaat
aaaatttcagaGGGGTTAGAACATTTGGCAAATATCACTTGCTTTGAGAA
CGACTCAACGATAGATTTAGCTGACTGTGTTGGGAATCTTTCAATCAATG
ACAGTTCTATAGAAAAAATACAGGAAcaatttttacaagttcttaGTGAC
TCAGTTCGAACTCGAGTTGAAACCATCCCTCGACCACTTTTGCAAGATGG
TAATCCAGAAACAAGTCTTGGAATCCTTTTTTCAGGAGGGATTGACTCTG
TAGTTTTGGCAGCTCTTGCTCATAGACATGTTCCCCCAAATGAAAGTATT
GATCTTATCAATGTCGCTtttgaagagaaaaagaaaatacctcaaaatat
gaaaaagaagtATGCTAATAAACCTGGTAATGATAATACTGATGTTAAAA
GTTTTAATGTTCCTGATCGATTGACAGGAAAAGAAGCTGTTAAGGAACTG
CCAGAGGATCGACAATGGAATTTCATTGAAGTAGACGTCACTTTAGAGGA
ACTACAAGCTGAAAGAAAATCTCGCATAAATGATCTTGTATGTCCCTTAA
ATACTGTTCTTGACGATAGCATTGGTTGTGCCATCTGGTTCGCTGCTAGA
GGTATGGGAAAGAGGTATGGTTTGAATGATGAAAATGAGCTGGAACTTGT
AGATGAATGTTacaaatcgaaagtgaaagtattATTTACAGGAATGGGTG
CGGACGAACAGCTTGGTGGGTACGCTAGACACCGCACAAAGTATGAGCAT
GGCGGTTGGACTGCATTACGTAACGAAATGAAAATGGAAGTGGATAGAAT
TTCTTCTCGTAATTTAGGTCGAGATGATAGATGCATTTCAGATCATGGGC
GTGAAACTCGTTTTCCatttttggatgaaaatgtTGTTAGGTTTTTGGAT
TCACTTCCGGTTTGTGTTAAAAGTGATCCAAGATTGGAACGAGGTTATGG
GGAGAAAATTCTTTTACGTGAAGTGGCTGAACATCATTTAAAGTTGAATT
TCGCTAGTCGATTACCTAAACGTGCAATTCAATTTGGTTCGCGTATTGCT
AAGCTGGAAAGTGGgaaagaaaaaggaagtgaAAAGTGTGAACGTTTGAA
ATAACAATCACGATCTCTAAATTTATCTTACATTTTAACCATTTGTaaat
cattttataatttttatactttatttttgaatttatcaAAGAATCAAAAG
TGACCGTCTCGTATGTcttgaaatttcttgaaattgttGCAATTATGTGT
TTTCTCTCTTGAAAAACCTTCTTTAAataaacaaacatcaatttcTATAT
TCTTATGTCTTCACCAGAAAATACGTACtagaaaaatgagtaaaaactAT
AACAACAAAATTCAAATCCAATTCAAGAGAGGTGGACTTGAATCAAATTT
ATCACCCTTTCAACGAACTGTTGGATCAACTGAGAGTTCATTACCCAAAT
TCCACACAGACGAaagtgaaaagaaatatttacaatcaGCCCCCACAGCA
CCTGTTGAGGATGACGACCTTTACGATCCTTTCAACCCTTCTGATGAAGC
GGAGCCAGAACCAGAACCGGTTGAAGCGCcacctaaaaagaaaaagaaac
gaaAATCGTAATTAAACCTTTTCTATTAAACTCTCTATCGCAGTTAATTT
TATTCAAACGTTTCTTCAACACCTAATCATGTTATTGATTCTCAAAGTCC
ATAAAGAGATTATTGGTTGCAACTGCAATGAAATATCTGTAGTACTTACG
AAATTGTGATTCTTGATTTTTAATGCTACCATTTTTAACCCCCTAATCAA
CTGAAGTTCTTCATTCAAAACTGATAATGATATATGTGAAGAAGTAAGAA
TTTCTGTAGAACTATGTTCACTATGGACGAAATGCATACACCTGCTATGC
CACCCAAAGTGACTCCTGAGTGAATAAAGTTgggcaaaaattttcatttc
ttcgTGTATGTATTCTTGATTTATTTATGAATTTCCTGACTCATGGTATG
TTAAAAGTATACTGTATAAACAAAATTAATATTCCACATTTTTCACTGAC
AGACGATGGGACATGGATGACGAAGCCTCTGACAAATCAATTGTTGAAGA
TTTATTGAAGAAATCCACAGTGGACGATCAGATCTCCTCTGTGGTCGCCA
AACAAGAAGCCGCAAGACAAGATGAAATGAGCGATGAAGATGAACTAGAT
AAATTCATGGCTGGAATTGAGGTTCGTGATATTTATTTTATGTatgctac
gtcatatcttccttcgtttcgagcgtaaaactcctactcttcgggatatg
agcactgctcttgttttgaatattgagaTTCACCGGATAAATCACATGCG
CAccgaggttttaatgaaacaataaagAGTTTCGAAatctaagccaatca
gctgtgtatTAAACATtcttatttgaaatctctattgataaacatctttt
gtgaaagttgtatattatatttaaacctattaataaggaATCCCCGATGG
GGTCACTaatggccgcctatagcagtgcctatagaccaagagtaaggctt
aaaagcctggagctgtctattttGTAGATTAtattttctgttgttctatc
gaAACCATAGAcaatgttatcgtccgttacatcGATAGTAAAGCCGGGAA
AATATTATGCGCGTGGAgtttacggaaaaaaatcggcgggagagtttcga
agaaaaaggaaaactaccggctgtaaactctttttCGGCAAAAATCCGTT
TACGAATTTTCTTCTGCTTTgcgcttatttcttagatagtgatttttCTT
CGACTATAGCATAGTATCGAAACCATTGTTGAGGACTTCTCTGGACTTTC
CCATTCATCGTTGTCTAAACTTTCGATACAAGTGACGACCAACCTGGACC
AACGACAATTTGATGTTTAAAGGACTTTTGAAGttttacaaatctttttt
tgccaaaatacaTTGTACTGATGAAATTGAATTCAACTAAACTGATATTA
NCGATGAAGATGAACTAGATAAATTCATGGCTGGAATTGAGGTTCGTGAT
ATTTATTTTATGTatgctacgtcatatcttccttcgtttcgagcgtaaaa
ctcctactcttcgggatatgagcactgctcttgttttgaatattgagaTT
CACCGGATAAATCACATGCGCACCNTCCATTACTCGCTTATCctgatgat
gaagaagaaatggAATATGATTCTGATGGAAACCCTATCCCTCCTGAACG
ATCCAAAGTAAACCATATTATGCTCGTTTAACTCTTTTCTTCGTACTTAA
TGTCAACGAACGTAACTCTTCTTTTGTAGAATATTTTGACTTTCTCAGTC
TGCAtgtttccttttcttttttattagtTTGGTTTGGTTTCTAAAGGTTG
TACAGATAGGCCTCTTAATAACTTTTTTGAACTCTTCTTTCTACTTTGGG
AGGGCGTAATGGGATTTTAGTTATCTTGCTTGACCNTATGTTAAAAGTAT
ACTGTATAAACAAAATTAATATTCCACATTTTTCACTGACAGACGATGGG
ACATGGATGACGAAGCCTCTGACAAATCAATTGTTGAAGATTTATTGAAG
AAATCCACAGTGGACGATCAGATCTCCTCTGTGGTCGCCAAACAAGAAGC
CGCAAGACAAGATGAAATGAGCGATGAAGATGAACTAGATAAATTCATGG
CTGGAATTGAGGTTCGTGATATTTATTTTATGTatgctacgtcatatctt
ccttcgtttcgagcgtaaaactcctactcttcgggatatgagcactgctc
ttgttttgaatattgagaTTCACCGGATAAATCACATGCGCAccgaggtt
ttaatgaaacaataaagAGTTTCGAAatctaagccaatcagctgtgtatT
AAACATtcttatttgaaatctctattgataaacatcttttgtgaaagttg
tatattatatttaaacctattaataaggaATCCCCGATGGGGTCACTaat
ggccgcctatagcagtgcctatagaccaagagtaaggcttaaaagcctgg
agctgtctattttGTAGATTAtattttctgttgttctatcgaAACCATAG
AcaatgttatcgtccgttacatcGATAGTAAAGCCGGGAAAATATTATGC
GCGTGGAgtttacggaaaaaaatcggcgggagagtttcgaagaaaaagga
aaactaccggctgtaaactctttttCGGCAAAAATCCGTTTACGAATTTT
CTTCTGCTTTgcgcttatttcttagatagtgatttttCTTCGACTATAGC
ATAGTATCGAAACCATTGTTGAGGACTTCTCTGGACTTTCCCATTCATCG
TTGTCTAAACTTTCGATACAAGTGACGACCAACCTGGACCAACGACAATT
TGATGTTTAAAGGACTTTTGAAGttttacaaatctttttttgccaaaata
caTTGTACTGATGAAATTGAATTCAACTAAACTGatattatatatatatc
atCAGTTATTATTTCTGTGTTTCtagaaaaatcatattttcatcTTTAGG
AGACactggaaaaagaagaaactgacagaaaatccaagaaaaagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00002593-exon-sc0000021-1491911889:24130..26686 | TCONS_00002593-exon-sc0000021-1491911889:24130..26686 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1510915933:24130..26686 | TCONS_00002593-exon-sc0000021-1510915933:24130..26686 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1575043694:24130..26686 | TCONS_00002593-exon-sc0000021-1575043694:24130..26686 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1491911889:27132..27300 | TCONS_00002593-exon-sc0000021-1491911889:27132..27300 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1510915933:27132..27300 | TCONS_00002593-exon-sc0000021-1510915933:27132..27300 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1575043694:27132..27300 | TCONS_00002593-exon-sc0000021-1575043694:27132..27300 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1491911889:29629..29675 | TCONS_00002593-exon-sc0000021-1491911889:29629..29675 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1510915933:29629..29675 | TCONS_00002593-exon-sc0000021-1510915933:29629..29675 | Clytia hemisphaerica | exon |
| TCONS_00002593-exon-sc0000021-1575043694:29629..29675 | TCONS_00002593-exon-sc0000021-1575043694:29629..29675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:24130..29675 + |
Blast
BLAST of TCONS_00002593 vs. Swiss-Prot (Human)
Match: ASND1 (Asparagine synthetase domain-containing protein 1 OS=Homo sapiens GN=ASNSD1 PE=2 SV=2) HSP 1 Score: 410.223 bits (1053), Expect = 2.622e-130 Identity = 258/655 (39.39%), Postives = 384/655 (58.63%), Query Frame = 3
Query: 222 MCGIFCKICKRLEVKTKPIDDNIIPLIQNRGPDSCQSLTRIVKVGSD-ELELTFCSTVLHLRGESVTKQPLINSNGDVLLWNGEIFGGLDVGLHENDTEILMRHLTAISQEMLENVEPAEKNMADLFTKIQGPWAFVFYQKSLNKLWYGRDYFGRRSLIQ--SSIDGNFLLTS--AICGDFREESEEIKAKSIYCLNLVDLKIDD---LSLPAFKEAAKPFEIKILPPKPNKHSLLGSIHRCTINYPPSENKI---------SEGLEHLANITCFENDSTIDLADCVGNLSINDSSIEKIQEQFLQVLSDSVRTRVETIPR-------PLLQDGNPETSLGILFSGGIDSVVLAALAHRHVPPNESIDLINVAF-EEKKKIPQNMKKKYANKPGND--------NTDV---------KSFNVPDRLTGKEAVKELPE---DRQWNFIEVDVTLEELQAERKSRINDLVCPLNTVLDDSIGCAIWFAARGMGKRYGXXXXXXXXXXXXCYKSKVKVLFTGMGADEQLGGYARHRTKYEHGGWTALRNEMKMEVDRISSRNLGRDDRCISDHGRETRFPFLDENVVRFLDSLPVCVKSDPRLERGYGEKILLREVAEHHLKLNFASRLPKRAIQFGSRIAKLXXXXXXXXXXCERLK 2051
MCGI C + E ++ + ++++ ++ RGP+S + L + SD + F + VLHLRG +T QP+ + G+V LWNGEIF G+ V ENDT+IL +L++ E + LF+++QGPW+F++YQ S + LW+GRD+FGRRSL+ S++ +F L+S + +E+ A ++ ++L I L L +K ++ I+ N S + + ++ +E K+ + L A T N S + + + + D ++++ +QF+ VLS +V+ RV +PR +L+ + + ++ ILFSGGIDS+V+A LA RH+P +E IDL+NVAF E+K +P ++ NK N + DV K +VPDR+TG+ +KEL R WNF+E++V++EELQ R++RI L+ PL+TVLDDSIGCA+WFA+RG+G + + Y+S KV+ TG+GADEQL GY+RHR +++ G L E+ ME+ RISSRNLGRDDR I DHG+E RFPFLDENVV FL+SLP+ K++ L RG GEK+LLR +A L L ++ LPKRA+QFGSRIAK+E EK S+KC RL+
Sbjct: 1 MCGICCSVNFSAEHFSQDLKEDLLYNLKQRGPNSSKQLLK-----SDVNYQCLFSAHVLHLRG-VLTTQPVEDERGNVFLWNGEIFSGIKVEAEENDTQILFNYLSSCKNE---------SEILSLFSEVQGPWSFIYYQASSHYLWFGRDFFGRRSLLWHFSNLGKSFCLSSVGTQTSGLANQWQEVPASGLFRIDLKSTVISGCIILQLYPWKYISRE---NIIEENVNSLSQISADLPAFVSVVANEAKLYLEKPVVPLNMMLPQAALETHCSNISNVPPTREILQVFLTDVHMKEVIQQFIDVLSVAVKKRVLCLPRDENLTANEVLKTCDRKANVAILFSGGIDSMVIATLADRHIPLDEPIDLLNVAFIAEEKTMPTTFNRE-GNKQKNKCEIPSEEFSKDVAAAAADSPNKHVSVPDRITGRAGLKELQAVSPSRIWNFVEINVSMEELQKLRRTRICHLIRPLDTVLDDSIGCAVWFASRGIG-------WLVAQEGVKSYQSNAKVVLTGIGADEQLAGYSRHRVRFQSHGLEGLNKEIMMELGRISSRNLGRDDRVIGDHGKEARFPFLDENVVSFLNSLPIWEKANLTLPRGIGEKLLLR-LAAVELGLTASALLPKRAMQFGSRIAKMEKINEKASDKCGRLQ 628
The following BLAST results are available for this feature:
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