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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002550 ID=TCONS_00002550|Name=TCONS_00002550|organism=Clytia hemisphaerica|type=transcript|length=1253bp
TTCATTGTTCGCCACTTGGCTCCGCACCCAAGAAGGATGGTTCCCGAAGA
ATTATTCTAGATCTGTCGTCACCACGAGATCACTCTGTCAACGATGGCAT
CCCGGAGGATCTGTGTCATGTCAAGTATTCATCATTCGACGATGCGGTAA
ATATGGTGGTTTCTCTTGGAGTGGGTTGCTACATGGGCAAGATTGACATT
CGGCACGCCTTTAGACTGTGCCCAGTTCGATCAGAAGATTGGCACTTGTT
GGGCTATTGTTGGCAAGATCGCTTTTTCGTTGACGTTTGTCTCCCCTTTG
GCAGTCGGTCATCTCCTTGTATCTTCAACAGCTTCGCAGACGCTCTCCAA
TGGATTCTCGTTTCTAAGTTTGACCTATCCGTTTTGGTGCATTATTTGGA
CGATTTCTTTCTCTGCTCTATCAACTTTGAAACGACTCGATACTACATGG
ATTTGGTACAGGCTGTTTTTGACATCATTGGAGTACCAGTGGCAGTTGAC
AAGCTTGAGGGTCCCAGTCAGTTTATCACATTCTTGGGCATTGAAATTGA
TTCTAGCTCCTTTACCATTCGTCTTCCTATTGATAAGCTTCTTGAACTTC
GTCAACTTGTGGACTTTTGGTTGGACCGCCGGAAATGCACCAAACGAGAA
CTTTTGTCCCTCATTGGATCTCTTTCTTTTGCTTGTAAGGTCATCCGCCC
CGGTAGAATTTTCCTGCGTCGACTCATCGATCTTTCCACCTCTGTATCCA
AGCTTTCACATCACATTGACATTTCTACTAGTGTTCGTCTAGATTTGGCC
ATGTGGGCTGAGTTTTTGTCGTCTTGGAATGGTGTCTCTTTTCTCCCTGA
ACCAGCAGTCACTTCAGATTCTATTGCGCTTTTTACTGATGCATCTTTTC
TTGGTCTAGGTGGCTTCTTTCAGGGACAGTGGTTGTCCCACCCATGGCCA
TACGACATGTCTGACCTAACTCACATCGCAGTTCTTGagctttttgctgt
ttttgccaCCATTTCCGCATTCGCCATCCCTCTGACCAACAAGCAGATCA
CAATGTTCACAGATAATGAGCCTATCGTTGCAATCTGGTCGTCCGGCACT
TCCAAGGACAAACAGCTTATGGCATTGGTTAGAGAACTGTTTTTTCTTAC
TGCTCGTCACAACATCTCTGTTCGTTTTGTTCATGTCCCTGGTCGTCGTA
ACACTTTTGCTGACTTATTGTCTCGTCTTCAGGTCGAAGCTTTCAAGTCG
ATA Run BLAST on NCBI protein sequence of TCONS_00002550-protein >TCONS_00002550-protein ID=TCONS_00002550-protein|Name=TCONS_00002550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
HCSPLGSAPKKDGSRRIILDLSSPRDHSVNDGIPEDLCHVKYSSFDDAVN
MVVSLGVGCYMGKIDIRHAFRLCPVRSEDWHLLGYCWQDRFFVDVCLPFG
SRSSPCIFNSFADALQWILVSKFDLSVLVHYLDDFFLCSINFETTRYYMD
LVQAVFDIIGVPVAVDKLEGPSQFITFLGIEIDSSSFTIRLPIDKLLELR
QLVDFWLDRRKCTKRELLSLIGSLSFACKVIRPGRIFLRRLIDLSTSVSK
LSHHIDISTSVRLDLAMWAEFLSSWNGVSFLPEPAVTSDSIALFTDASFL
GLGGFFQGQWLSHPWPYDMSDLTHIAVLELFAVFATISAFAIPLTNKQIT
MFTDNEPIVAIWSSGTSKDKQLMALVRELFFLTARHNISVRFVHVPGRRN
TFADLLSRLQVEAFKSI Run BLAST on NCBI transcript from alignment at sc0000020:227623..228875 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002550 ID=TCONS_00002550|Name=TCONS_00002550|organism=Clytia hemisphaerica|type=transcript|length=1253bp|location=Sequence derived from alignment at sc0000020:227623..228875 (Clytia hemisphaerica)
TATCGACTTGAAAGCTTCGACCTGAAGACGAGACAATAAGTCAGCAAAAG
TGTTACGACGACCAGGGACATGAACAAAACGAACAGAGATGTTGTGACGA
GCAGTAAGAAAAAACAGTTCTCTAACCAATGCCATAAGCTGTTTGTCCTT
GGAAGTGCCGGACGACCAGATTGCAACGATAGGCTCATTATCTGTGAACA
TTGTGATCTGCTTGTTGGTCAGAGGGATGGCGAATGCGGAAATGGtggca
aaaacagcaaaaagctCAAGAACTGCGATGTGAGTTAGGTCAGACATGTC
GTATGGCCATGGGTGGGACAACCACTGTCCCTGAAAGAAGCCACCTAGAC
CAAGAAAAGATGCATCAGTAAAAAGCGCAATAGAATCTGAAGTGACTGCT
GGTTCAGGGAGAAAAGAGACACCATTCCAAGACGACAAAAACTCAGCCCA
CATGGCCAAATCTAGACGAACACTAGTAGAAATGTCAATGTGATGTGAAA
GCTTGGATACAGAGGTGGAAAGATCGATGAGTCGACGCAGGAAAATTCTA
CCGGGGCGGATGACCTTACAAGCAAAAGAAAGAGATCCAATGAGGGACAA
AAGTTCTCGTTTGGTGCATTTCCGGCGGTCCAACCAAAAGTCCACAAGTT
GACGAAGTTCAAGAAGCTTATCAATAGGAAGACGAATGGTAAAGGAGCTA
GAATCAATTTCAATGCCCAAGAATGTGATAAACTGACTGGGACCCTCAAG
CTTGTCAACTGCCACTGGTACTCCAATGATGTCAAAAACAGCCTGTACCA
AATCCATGTAGTATCGAGTCGTTTCAAAGTTGATAGAGCAGAGAAAGAAA
TCGTCCAAATAATGCACCAAAACGGATAGGTCAAACTTAGAAACGAGAAT
CCATTGGAGAGCGTCTGCGAAGCTGTTGAAGATACAAGGAGATGACCGAC
TGCCAAAGGGGAGACAAACGTCAACGAAAAAGCGATCTTGCCAACAATAG
CCCAACAAGTGCCAATCTTCTGATCGAACTGGGCACAGTCTAAAGGCGTG
CCGAATGTCAATCTTGCCCATGTAGCAACCCACTCCAAGAGAAACCACCA
TATTTACCGCATCGTCGAATGATGAATACTTGACATGACACAGATCCTCC
GGGATGCCATCGTTGACAGAGTGATCTCGTGGTGACGACAGATCTAGAAT
AATTCTTCGGGAACCATCCTTCTTGGGTGCGGAGCCAAGTGGCGAACAAT
GAA Coding sequence (CDS) from alignment at sc0000020:227623..228875 >TCONS_00002550 ID=TCONS_00002550|Name=TCONS_00002550|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at sc0000020:227623..228875 (Clytia hemisphaerica)
TATCGACTTGAAAGCTTCGACCTGAAGACGAGACAATAAGTCAGCAAAAG
TGTTACGACGACCAGGGACATGAACAAAACGAACAGAGATGTTGTGACGA
GCAGTAAGAAAAAACAGTTCTCTAACCAATGCCATAAGCTGTTTGTCCTT
GGAAGTGCCGGACGACCAGATTGCAACGATAGGCTCATTATCTGTGAACA
TTGTGATCTGCTTGTTGGTCAGAGGGATGGCGAATGCGGAAATGGtggca
aaaacagcaaaaagctCAAGAACTGCGATGTGAGTTAGGTCAGACATGTC
GTATGGCCATGGGTGGGACAACCACTGTCCCTGAAAGAAGCCACCTAGAC
CAAGAAAAGATGCATCAGTAAAAAGCGCAATAGAATCTGAAGTGACTGCT
GGTTCAGGGAGAAAAGAGACACCATTCCAAGACGACAAAAACTCAGCCCA
CATGGCCAAATCTAGACGAACACTAGTAGAAATGTCAATGTGATGTGAAA
GCTTGGATACAGAGGTGGAAAGATCGATGAGTCGACGCAGGAAAATTCTA
CCGGGGCGGATGACCTTACAAGCAAAAGAAAGAGATCCAATGAGGGACAA
AAGTTCTCGTTTGGTGCATTTCCGGCGGTCCAACCAAAAGTCCACAAGTT
GACGAAGTTCAAGAAGCTTATCAATAGGAAGACGAATGGTAAAGGAGCTA
GAATCAATTTCAATGCCCAAGAATGTGATAAACTGACTGGGACCCTCAAG
CTTGTCAACTGCCACTGGTACTCCAATGATGTCAAAAACAGCCTGTACCA
AATCCATGTAGTATCGAGTCGTTTCAAAGTTGATAGAGCAGAGAAAGAAA
TCGTCCAAATAATGCACCAAAACGGATAGGTCAAACTTAGAAACGAGAAT
CCATTGGAGAGCGTCTGCGAAGCTGTTGAAGATACAAGGAGATGACCGAC
TGCCAAAGGGGAGACAAACGTCAACGAAAAAGCGATCTTGCCAACAATAG
CCCAACAAGTGCCAATCTTCTGATCGAACTGGGCACAGTCTAAAGGCGTG
CCGAATGTCAATCTTGCCCATGTAGCAACCCACTCCAAGAGAAACCACCA
TATTTACCGCATCGTCGAATGATGAATACTTGACATGACACAGATCCTCC
GGGATGCCATCGTTGACAGAGTGATCTCGTGGTGACGACAGATCTAGAAT
AATTCTTCGGGAACCATCCTTCTTGGGTGCGGAGCCAAGTGGCGAACAAT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002550-exon-sc0000020-1491911889:227623..228875 | TCONS_00002550-exon-sc0000020-1491911889:227623..228875 | Clytia hemisphaerica | exon |
| TCONS_00002550-exon-sc0000020-1510915933:227623..228875 | TCONS_00002550-exon-sc0000020-1510915933:227623..228875 | Clytia hemisphaerica | exon |
| TCONS_00002550-exon-sc0000020-1575043694:227623..228875 | TCONS_00002550-exon-sc0000020-1575043694:227623..228875 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:227623..228875 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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