TCONS_00002550-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002550-protein
Unique NameTCONS_00002550-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002550-protein ID=TCONS_00002550-protein|Name=TCONS_00002550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
HCSPLGSAPKKDGSRRIILDLSSPRDHSVNDGIPEDLCHVKYSSFDDAVN
MVVSLGVGCYMGKIDIRHAFRLCPVRSEDWHLLGYCWQDRFFVDVCLPFG
SRSSPCIFNSFADALQWILVSKFDLSVLVHYLDDFFLCSINFETTRYYMD
LVQAVFDIIGVPVAVDKLEGPSQFITFLGIEIDSSSFTIRLPIDKLLELR
QLVDFWLDRRKCTKRELLSLIGSLSFACKVIRPGRIFLRRLIDLSTSVSK
LSHHIDISTSVRLDLAMWAEFLSSWNGVSFLPEPAVTSDSIALFTDASFL
GLGGFFQGQWLSHPWPYDMSDLTHIAVLELFAVFATISAFAIPLTNKQIT
MFTDNEPIVAIWSSGTSKDKQLMALVRELFFLTARHNISVRFVHVPGRRN
TFADLLSRLQVEAFKSI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001369XLOC_001369Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002550TCONS_00002550Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR000477RT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 33..182
e-value: 8.2E-11
score: 41.4
NoneNo IPR availableCDDcd09275RNase_HI_RT_DIRS1coord: 293..410
e-value: 1.73612E-27
score: 104.287
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..367
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 276..414
e-value: 1.5E-9
score: 37.0
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 89..182
e-value: 6.2E-7
score: 29.1
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..182
score: 11.848

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002550-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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