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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002544 ID=TCONS_00002544|Name=TCONS_00002544|organism=Clytia hemisphaerica|type=transcript|length=1779bp
TTTAGCATCTAAGACTAATTATACAAGAGAATGCATAAGTGAATACACTT
TGATGCAAACTTTTTGAATAAGTTTCAGAGTGAATAATGGTGCAAACAGG
AATCGATTTCAGCTACAAGAAATGGCTCAAAAACCGTCAACTAACCACCA
AAATATTTTACTATATTGCCATCATCCTTGGCATTGAGTACTCAGTGACA
TTTGGAACCTTATTTgtctatttgaaaaatttccttcaaGTCAAAAATCA
TTTGGATGTCTTTTACAGCTGTATTTCTGGGATATACATTGTTTCTATGA
TTATGTCGGCAGttttcgttggaaagatattcgaCAGAACTCGGCGAACA
CGCCTTATCTTTTCTAGTGCCATCGCGTCGTTAGTTCTTGGCAATGTTTT
GTATACAATACCTATTTCACCGTATGTGTTATTATTCGGACGACTACTGT
CCGGTGTAGGTGGCTGTCTCCGCCCGATCATTATGTCCGAAATTACCCGC
TCTTTTGCACCGGACGAAGTCGTCTCACAAATATCTGCTGTGTCTTGTAC
ATTTGTTTTAGGATTTACCCTTGGACCATGTATAAATTTTGCTTTTGTTG
AAGcagatttttggtttttgggcGTGCATATAAAATATGCAAACGGAGCT
AGCTTAGTTACCTGTTTTCTCTACACGGTTGCattctttttatcattgtt
tttcgtCAGTGATTTATCGAGAGAATTTGATTTGAAAGAAGCTTTAAAAA
GTTTATCTGATGAAGACTTAAAAGAAGCTTCGTTGGATTCAGAGCAAAAA
CTCATCACCAATGAGCCTTTTGAACAAACCCAAGAAGAGTCGGTTCCTAT
GATCGAGAAGTCAACTGCAAATGCTAACAACGAAATAGAAACCATCTTTG
TCTTACGAAAATTCTTCACCAACGTTGATAcaattttaattctggcaatG
TCTTTTACAATGATGTTCTGTGTAGTTCTTTATGATTTATGGGTACCTCT
GGCATGCATCGAACTCTTAAATTGGACAAACTTGGATATAAATCTTATTT
ATCTGACAAATGGAATAGTGAACTTATTATTTTTACTCGTATGCATCTTC
AAGCCACCAAAAATTGAAACGATGATTTATTTAGCTTACGCCGCATTTGC
ATCAATCATATTTATATTCGGAGCTTTCCTATTCTTTAAATATGACACAT
GGCATTTAACCTGGTTGGATTCTATTTTATGGTTTATTGGAGCTTTTTGT
GTATGCATTATTTTTACAGCAGAAGAGTTGCTTCTAATCAGCACCTTGGC
CAAAATGGTACCCTCTCAAGCTCAATCCGTTTCACAAGGAATACGTCAAG
CATCTGCGCGCCTTGGCGCCGCCATTGGGCTGTTCAGCGCCGCTTTTACT
TTTCaacatttgaattatttttgcccatttgtattttttgtatccatttt
attatttttgcttttGGTTATTAGAAAGAGGCATTTTTGTGAGCCTGTAC
CAATTTTTTAACTGAAATGTTTTGAGTAGAATATCAGTAGTGTTGTATTT
TGTTTCGCAGcagtttttcttttatcataAATTATGTAAAGTGATTGTTA
TTCTTATGATTGAAGTGTTATTTTtgagtctgttaaatgacgcgccttac
gcgcccacgcacCCACACGCACTACGAGCCTGATAACTCAGTAGATAACT
CAGTAGATAACTcaggacgacggacgaatttttgaagccttcgttcGCGC
TACGGCACTTTTCTACAGGCCAACCCGAA Run BLAST on NCBI protein sequence of TCONS_00002544-protein >TCONS_00002544-protein ID=TCONS_00002544-protein|Name=TCONS_00002544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MVQTGIDFSYKKWLKNRQLTTKIFYYIAIILGIEYSVTFGTLFVYLKNFL
QVKNHLDVFYSCISGIYIVSMIMSAVFVGKIFDRTRRTRLIFSSAIASLV
LGNVLYTIPISPYVLLFGRLLSGVGGCLRPIIMSEITRSFAPDEVVSQIS
AVSCTFVLGFTLGPCINFAFVEADFWFLGVHIKYANGASLVTCFLYTVAF
FLSLFFVSDLSREFDLKEALKSLSDEDLKEASLDSEQKLITNEPFEQTQE
ESVPMIEKSTANANNEIETIFVLRKFFTNVDTILILAMSFTMMFCVVLYD
LWVPLACIELLNWTNLDINLIYLTNGIVNLLFLLVCIFKPPKIETMIYLA
YAAFASIIFIFGAFLFFKYDTWHLTWLDSILWFIGAFCVCIIFTAEELLL
ISTLAKMVPSQAQSVSQGIRQASARLGAAIGLFSAAFTFQHLNYFCPFVF
FVSILLFLLLVIRKRHFCEPVPIF Run BLAST on NCBI transcript from alignment at sc0000020:100282..102060 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002544 ID=TCONS_00002544|Name=TCONS_00002544|organism=Clytia hemisphaerica|type=transcript|length=1779bp|location=Sequence derived from alignment at sc0000020:100282..102060 (Clytia hemisphaerica)
TTCGGGTTGGCCTGTAGAAAAGTGCCGTAGCGCgaacgaaggcttcaaaa
attcgtccgtcgtcctgAGTTATCTACTGAGTTATCTACTGAGTTATCAG
GCTCGTAGTGCGTGTGGgtgcgtgggcgcgtaaggcgcgtcatttaacag
actcaAAAATAACACTTCAATCATAAGAATAACAATCACTTTACATAATT
tatgataaaagaaaaactgCTGCGAAACAAAATACAACACTACTGATATT
CTACTCAAAACATTTCAGTTAAAAAATTGGTACAGGCTCACAAAAATGCC
TCTTTCTAATAACCaaaagcaaaaataataaaatggatacaaaaaataca
aatgggcaaaaataattcaaatgttGAAAAGTAAAAGCGGCGCTGAACAG
CCCAATGGCGGCGCCAAGGCGCGCAGATGCTTGACGTATTCCTTGTGAAA
CGGATTGAGCTTGAGAGGGTACCATTTTGGCCAAGGTGCTGATTAGAAGC
AACTCTTCTGCTGTAAAAATAATGCATACACAAAAAGCTCCAATAAACCA
TAAAATAGAATCCAACCAGGTTAAATGCCATGTGTCATATTTAAAGAATA
GGAAAGCTCCGAATATAAATATGATTGATGCAAATGCGGCGTAAGCTAAA
TAAATCATCGTTTCAATTTTTGGTGGCTTGAAGATGCATACGAGTAAAAA
TAATAAGTTCACTATTCCATTTGTCAGATAAATAAGATTTATATCCAAGT
TTGTCCAATTTAAGAGTTCGATGCATGCCAGAGGTACCCATAAATCATAA
AGAACTACACAGAACATCATTGTAAAAGACattgccagaattaaaattgT
ATCAACGTTGGTGAAGAATTTTCGTAAGACAAAGATGGTTTCTATTTCGT
TGTTAGCATTTGCAGTTGACTTCTCGATCATAGGAACCGACTCTTCTTGG
GTTTGTTCAAAAGGCTCATTGGTGATGAGTTTTTGCTCTGAATCCAACGA
AGCTTCTTTTAAGTCTTCATCAGATAAACTTTTTAAAGCTTCTTTCAAAT
CAAATTCTCTCGATAAATCACTGacgaaaaacaatgataaaaagaatGCA
ACCGTGTAGAGAAAACAGGTAACTAAGCTAGCTCCGTTTGCATATTTTAT
ATGCACgcccaaaaaccaaaaatctgCTTCAACAAAAGCAAAATTTATAC
ATGGTCCAAGGGTAAATCCTAAAACAAATGTACAAGACACAGCAGATATT
TGTGAGACGACTTCGTCCGGTGCAAAAGAGCGGGTAATTTCGGACATAAT
GATCGGGCGGAGACAGCCACCTACACCGGACAGTAGTCGTCCGAATAATA
ACACATACGGTGAAATAGGTATTGTATACAAAACATTGCCAAGAACTAAC
GACGCGATGGCACTAGAAAAGATAAGGCGTGTTCGCCGAGTTCTGtcgaa
tatctttccaacgaaaaCTGCCGACATAATCATAGAAACAATGTATATCC
CAGAAATACAGCTGTAAAAGACATCCAAATGATTTTTGACttgaaggaaa
tttttcaaatagacAAATAAGGTTCCAAATGTCACTGAGTACTCAATGCC
AAGGATGATGGCAATATAGTAAAATATTTTGGTGGTTAGTTGACGGTTTT
TGAGCCATTTCTTGTAGCTGAAATCGATTCCTGTTTGCACCATTATTCAC
TCTGAAACTTATTCAAAAAGTTTGCATCAAAGTGTATTCACTTATGCATT
CTCTTGTATAATTAGTCTTAGATGCTAAA Coding sequence (CDS) from alignment at sc0000020:100282..102060 >TCONS_00002544 ID=TCONS_00002544|Name=TCONS_00002544|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at sc0000020:100282..102060 (Clytia hemisphaerica)
TTAAAAAATTGGTACAGGCTCACAAAAATGCCTCTTTCTAATAACCaaaa
gcaaaaataataaaatggatacaaaaaatacaaatgggcaaaaataattc
aaatgttGAAAAGTAAAAGCGGCGCTGAACAGCCCAATGGCGGCGCCAAG
GCGCGCAGATGCTTGACGTATTCCTTGTGAAACGGATTGAGCTTGAGAGG
GTACCATTTTGGCCAAGGTGCTGATTAGAAGCAACTCTTCTGCTGTAAAA
ATAATGCATACACAAAAAGCTCCAATAAACCATAAAATAGAATCCAACCA
GGTTAAATGCCATGTGTCATATTTAAAGAATAGGAAAGCTCCGAATATAA
ATATGATTGATGCAAATGCGGCGTAAGCTAAATAAATCATCGTTTCAATT
TTTGGTGGCTTGAAGATGCATACGAGTAAAAATAATAAGTTCACTATTCC
ATTTGTCAGATAAATAAGATTTATATCCAAGTTTGTCCAATTTAAGAGTT
CGATGCATGCCAGAGGTACCCATAAATCATAAAGAACTACACAGAACATC
ATTGTAAAAGACattgccagaattaaaattgTATCAACGTTGGTGAAGAA
TTTTCGTAAGACAAAGATGGTTTCTATTTCGTTGTTAGCATTTGCAGTTG
ACTTCTCGATCATAGGAACCGACTCTTCTTGGGTTTGTTCAAAAGGCTCA
TTGGTGATGAGTTTTTGCTCTGAATCCAACGAAGCTTCTTTTAAGTCTTC
ATCAGATAAACTTTTTAAAGCTTCTTTCAAATCAAATTCTCTCGATAAAT
CACTGacgaaaaacaatgataaaaagaatGCAACCGTGTAGAGAAAACAG
GTAACTAAGCTAGCTCCGTTTGCATATTTTATATGCACgcccaaaaacca
aaaatctgCTTCAACAAAAGCAAAATTTATACATGGTCCAAGGGTAAATC
CTAAAACAAATGTACAAGACACAGCAGATATTTGTGAGACGACTTCGTCC
GGTGCAAAAGAGCGGGTAATTTCGGACATAATGATCGGGCGGAGACAGCC
ACCTACACCGGACAGTAGTCGTCCGAATAATAACACATACGGTGAAATAG
GTATTGTATACAAAACATTGCCAAGAACTAACGACGCGATGGCACTAGAA
AAGATAAGGCGTGTTCGCCGAGTTCTGtcgaatatctttccaacgaaaaC
TGCCGACATAATCATAGAAACAATGTATATCCCAGAAATACAGCTGTAAA
AGACATCCAAATGATTTTTGACttgaaggaaatttttcaaatagacAAAT
AAGGTTCCAAATGTCACTGAGTACTCAATGCCAAGGATGATGGCAATATA
GTAAAATATTTTGGTGGTTAGTTGACGGTTTTTGAGCCATTTCTTGTAGC
TGAAATCGATTCCTGTTTGCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002544-exon-sc0000020-1491911889:100282..102060 | TCONS_00002544-exon-sc0000020-1491911889:100282..102060 | Clytia hemisphaerica | exon |
| TCONS_00002544-exon-sc0000020-1510915933:100282..102060 | TCONS_00002544-exon-sc0000020-1510915933:100282..102060 | Clytia hemisphaerica | exon |
| TCONS_00002544-exon-sc0000020-1575043694:100282..102060 | TCONS_00002544-exon-sc0000020-1575043694:100282..102060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:100282..102060 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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