TCONS_00002528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002528
Unique NameTCONS_00002528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002528 ID=TCONS_00002528|Name=TCONS_00002528|organism=Clytia hemisphaerica|type=transcript|length=1847bp
AAAAAAGAAGGAGAGTCAAAGAGTCTTACAGTcttagaacaaatttgtgt
gaTGGCATTGAACACAAAATGGCTTCCAAAGTGAAAGCACAAAGAACATG
CACTTTGTGCAAGAATGATAATAGAAATAAGAATGATTTCAACTGCATCT
CACAGCCACTAAAGGAAGATTTGTCTGCATTTTGCTGGATTTTACAGAAG
AAAATGCCAAAAGACTTTGCTTCCGACGACAGTTGCAGAATCTGCAACAA
gtgcaaaaagaaaattgttagGATGAAAAAGAACATGACCAAGCTCAAAG
TTGAGATACAAGATTTCTTGTCAAAAATGGAACTATTAACTGATACAGAA
ACTTTAGACAGCTCAAGAAACATCAGTAACATTAACAGACTGACAAGTGA
CAGGCAGACATTTAATGCAGAGACAAGTGACACGAAGACATTTAACACAG
GGACAAGTGACAGGCAGACATTTAACACAGAGACAAGTGATAGGCAGACG
TTTAACGCAGAGACAAGTGACAGGCAGACGTTTAACACAGAGACAAGTGA
CAGACAGACAAGTGACACAAAAACAATTGACATGGACACTTTGGACAAAG
TAAGTACAAGTAATCTCGAGACAAGTAACGAACAGACAATTGACATGGTT
ATAAATGACGATAGACTTTTGAATGACAAAGAAACAAGTGACACACATCA
AAATGACACACAGACAAATAATGGACAGACAACTGTTGAACCAGCAAGTG
ATGCCCAAACAAGTAATGGTGGAAATGAGTCAGTTCTGGAgatgaaaaaa
tgtaaaactcCGAAGGCATTCATACATGTTCATTGGCCTTCTGGTGAACG
CAATCGTGAGATCAAATCCGACCTAAACCCCTTAGCTGTCTGTCTTTTGA
GAGGGACTTACAGTGACATTGCTAAAAAGTGTTGGAAACACGAGGTCTTA
AagaaagagattttcaaactggTGCAAAAAGATATCGACAATGAAACAGT
GATGATTTGCAAGAAAAAGaaaattgttgaTGGGAAGAAAACTGTTTCAC
CGAGCATTCTCCAAAAAACTTCCAAGGAAGATATGATGaacttttcattg
gataaagtGATGGCTGAATTAAAACAATTCTTTCCGATGCTGAGCTCCAT
TCTAATAACAGTTGCAAAGAAAACGAAAGCCAGCATTCAAGTTGACAATA
GCAATCATTACAAAGTCATCAATACAATTTGCATGGCAGCCTCGATTCTT
CTTAAAAACCGTTTTGCCAAAATGACATCATTGCAGCTTTATGTCTCTCT
CATCATCAACCATTCATCATACACATCGTCAATGAAACGTTTGCAGGCAC
TTCGACTTGTTGTTTCCACACAATTTCTAAACAAAGTCATGGATTTGTTT
GGAAAAGACCACGACCAGCCTTTGAAGGATGCAAAGGCATATCTTGAAGA
TAGACTGAAAACAGAAAATGAGCCAATTGCTGTACCGATTCCTGAATTTA
ACACTTCAATTGCCGGACAACTTCAGGACAAAGTGATTCCAAATACCAAT
GACAGTGATAGATGGAGGAAATACAATCCCATTGATGATATCACaccaac
aatttttttgaaccatatattttttattttggatttAATATGGTAGAAAA
TGAGTGCAGTAAGGGGTTTCCTAATGGGacttgcaattttttaaactatt
caatttttcgttcttaAATAAACAACAGTctaaaaaaactcattttcggA
TACCCTACTGCTGAACTTCCTTGATttaagtttaaagttttttttaaatg
ccaATTTTTTCAGGTCCTAAAAGCAAAGTATTAGAAAGAGGACCAGA
Run BLAST on NCBI

transcript from alignment at sc0000020:865365..868376-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002528 ID=TCONS_00002528|Name=TCONS_00002528|organism=Clytia hemisphaerica|type=transcript|length=3012bp|location=Sequence derived from alignment at sc0000020:865365..868376- (Clytia hemisphaerica)
AAAAAAGAAGGAGAGTCAAAGAGTCTTACAGTCTTAGAACAAATTTGTGT
GATGGCATTGAACACAAAATGGCTTCCAAAGTGAAAGCACAAAGAACATG
CACTTTGTGCAAGAATGATAATAGAAATAAGAATGATTTCAACTGCATCT
CACAGCCACTAAAGGAAGATTTGTCTGCATTTTGCTGGATTTTACAGAAG
AAAATGCCAAAAGACTTTGCTTCCGACGACAGTTGCAGAATCTGCAACAA
GTGCAAAAAGAAAATTGTTAGGGTAGGTAGTAGCATTCATTATAAAATTG
AATTTTATTGTACTTTATTGAAGCCTTGTTTGAAACATAATCCTAAACAA
ACGCGAGTTTAATTTGATGGAAATTCGATGCCTTTTACCTAAATTTTGTT
TGGAATTATAAAACAATACTCAAATTTCTAAAAGTTTGTTTGTCATTTGT
TTATTGACTTCTTCAAACGCCATTGATTGATGTGCTTTTAACATGCAAGC
AGCGAAATCATAGTGATTGCCAAGAGCAGAATTGCATAAAAGCTGTTGCA
AGTTAAGTCCGTATTGCAAGTTAAGTCCGTATTGCAAGTTATGGCAGTTC
AGGTTAATTCCTTTTATTCTTTTATTTTATATTTTACTTGCTTATTTTTT
ACAATACAGATGAAAAAGAACATGACCAAGCTCAAAGTTGAGATACAAGA
TTTCTTGTCAAAAATGGAACTATTAACTGATACAGAAACTTTAGACAGCT
CAAGAAACATCAGTAACATTAACAGACTGACAAGTGACAGGCAGACATTT
AATGCAGAGACAAGTGACACGAAGACATTTAACACAGGGACAAGTGACAG
GCAGACATTTAACACAGAGACAAGTGATAGGCAGACGTTTAACGCAGAGA
CAAGTGACAGGCAGACGTTTAACACAGAGACAAGTGACAGGCAGACGTTT
AACACAGAGACAAGTGACAGACAGACAAGTGACACAAAAACAATTGACAT
GGACACTTTGGACAAAGTAAGTACAAGTAATCTCGAGACAAGTAACGAAC
AGACAATTGACATGGTTATAAATGACGATAGACTTTTGAATGACAAAGAA
ACAAGTGACACACATCAAAATGACACACAGACAAATAATGGACAGACAAC
TGTTGAACCAGCAAGTGATGCCCAAACAAGTAATGGTGGAAATGAGTCAG
TTCTGGAGATGAAAAAATGTAAAACTCCGAAGGCATTCATACATGTTCAT
TGGCCTTCTGGTGAACGCAATCGTGAGGTAATAGTCACCTTGGGTCAATA
ATGGGACAGGACAGTAAAAATCATTTGTGACAGCCTCATATATCATGTTA
TTGTTACATATATTAACGTTGAGACAAAAAGTCTTTTTTAAAGTTCTAAT
TTGATTTATTATCACATACTACAGTATTTCAATTTTATTTCAATTTAATT
CAATTCTAGATCAAATCCGACCTAAACCCCTTAGCTGTCTGTCTTTTGAG
AGGGACTTACAGTGACATTGCTAAAAAGTGTTGGAAACACGAGGTCTTAA
AGAAAGAGATTTTCAAACTGGTGCAAAAAGATATCGACAATGAAACAGTG
ATGATTTGCAAGAAAAAGGTATTTAACTGGGTGCATGTCACTAGTCCAAC
ACTTTCTAGTCCAACAGTAAAATAGTCCGAATCTATTTTAAAATAAATTT
ACAATTTAGAAGTCTTTTTTTCTGACGTCACTTTTGTCAGAAAACAAAAG
ATTTTAGAATGTTGAATAAGGGTTTTTCATTGAGATAATATTAATAAAAG
TTCATTATGGTGGCATTTTGACATAATTAGAAATAAAGGACCAATCAAAT
TTGCTTTATTTGGACCTGTTTGGACCATTAAAAAGATCACTTATAGCAAA
AAGCTATTCTATAAAAACTTTATTGCTAAGAAAAATAAATAAATCTCATT
AAATTTGAAAGGTTGAGCTTCACTGGTATTCTGAACTTTTTAAGAAAATT
GTTGATGGGAAGAAAACTGTTTCACCGAGCATTCTCCAAAAAACTTCCAA
GGAAGATATGATGAACTTTTCATTGGATAAAGTGATGGCTGAATTAAAAC
AATTCTTTCCGATGCTGAGCTCCATTCTAATAACAGTTGCAAAGAAAACG
AAAGCCAGCATTCAAGTTGACAATAGCAATCATTACAAAGTCATCAATAC
AATTTGCATGGCAGCCTCGATTCTTCTTAAAAACCGTTTTGCCAAAATGA
CATCATTGCAGCTTTATGTCTCTCTCATCATCAACCATTCATCATACACA
GTTTGTATTATTTATTTTTGAAAATTATTCTGCTCTGTTCTATTAGTTTT
TTGGCTCTGAAGAGAACGTTTGAAAACTATAAAAACTATTTTACTTCTGC
ATTAATAGATTTCATATATGATCGCAAACAATACCCTCTACAGGATAATC
TTACAATTCTAATTCTCCAATTCTATTTTCTTATGTCTAGTCGTCAATGA
AACGTTTGCAGGCACTTCGACTTGTTGTTTCCACACAATTTCTAAACAAA
GTCATGGATTTGTTTGGAAAAGACCACGACCAGCCTTTGAAGGATGCAAA
GGCATATCTTGAAGATAGACTGAAAACAGAAAATGAGCCAATTGCTGTAC
CGATTCCTGAATTTAACACTTCAATTGCCGGACAACTTCAGGACAAAGTG
ATTCCAAATACCAATGACAGTGATAGATGGAGGAAATACAATCCCATTGA
TGATATCACACCAACAATTTTTTTGAACCATATATTTTTTATTTTGGATT
TAATATGGTAGAAAATGAGTGCAGTAAGGGGTTTCCTAATGGGACTTGCA
ATTTTTTAAACTATTCAATTTTTCGTTCTTAAATAAACAACAGTCTAAAA
AAACTCATTTTCGGATACCCTACTGCTGAACTTCCTTGATTTAAGTTTAA
AGTTTTTTTTAAATGCCAATTTTTTCAGGTCCTAAAAGCAAAGTATTAGA
AAGAGGACCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001352XLOC_001352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002528-exon-sc0000020-1575043694:868105..868376TCONS_00002528-exon-sc0000020-1575043694:868105..868376Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1575043694:867467..867717TCONS_00002528-exon-sc0000020-1575043694:867467..867717Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1575043694:867100..867436TCONS_00002528-exon-sc0000020-1575043694:867100..867436Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1575043694:866759..866917TCONS_00002528-exon-sc0000020-1575043694:866759..866917Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1575043694:866077..866382TCONS_00002528-exon-sc0000020-1575043694:866077..866382Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1575043694:865365..865886TCONS_00002528-exon-sc0000020-1575043694:865365..865886Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1510915933:868105..868376TCONS_00002528-exon-sc0000020-1510915933:868105..868376Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1510915933:867467..867717TCONS_00002528-exon-sc0000020-1510915933:867467..867717Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1510915933:867100..867436TCONS_00002528-exon-sc0000020-1510915933:867100..867436Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1510915933:866759..866917TCONS_00002528-exon-sc0000020-1510915933:866759..866917Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1510915933:866077..866382TCONS_00002528-exon-sc0000020-1510915933:866077..866382Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1510915933:865365..865886TCONS_00002528-exon-sc0000020-1510915933:865365..865886Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1491911889:868105..868376TCONS_00002528-exon-sc0000020-1491911889:868105..868376Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1491911889:867467..867717TCONS_00002528-exon-sc0000020-1491911889:867467..867717Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1491911889:867100..867436TCONS_00002528-exon-sc0000020-1491911889:867100..867436Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1491911889:866759..866917TCONS_00002528-exon-sc0000020-1491911889:866759..866917Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1491911889:866077..866382TCONS_00002528-exon-sc0000020-1491911889:866077..866382Clytia hemisphaericaexon
TCONS_00002528-exon-sc0000020-1491911889:865365..865886TCONS_00002528-exon-sc0000020-1491911889:865365..865886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:865365..868376 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.712481	0	0	0	0.0389302	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.438612	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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