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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002513 ID=TCONS_00002513|Name=TCONS_00002513|organism=Clytia hemisphaerica|type=transcript|length=3448bpRun BLAST on NCBI protein sequence of TCONS_00002513-protein >TCONS_00002513-protein ID=TCONS_00002513-protein|Name=TCONS_00002513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp MAEKQTEDNLDLSLESTDNDATEGAPVIAHKQMQDVSGSGASTPMEADDSRun BLAST on NCBI transcript from alignment at sc0000020:569606..604739- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002513 ID=TCONS_00002513|Name=TCONS_00002513|organism=Clytia hemisphaerica|type=transcript|length=35134bp|location=Sequence derived from alignment at sc0000020:569606..604739- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:569606..604739- >TCONS_00002513 ID=TCONS_00002513|Name=TCONS_00002513|organism=Clytia hemisphaerica|type=CDS|length=31248bp|location=Sequence derived from alignment at sc0000020:569606..604739- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002513 vs. Swiss-Prot (Human)
Match: IWS1 (Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2) HSP 1 Score: 251.906 bits (642), Expect = 5.270e-70 Identity = 136/299 (45.48%), Postives = 205/299 (68.56%), Query Frame = 1
Query: 1180 YVSDFDLMMXXXXXXXXXXXXXDDYET-LGDQDDLINEMIKQMHECAKEDRMLNQCGKAATKKLKMLPVVSTHLRKANLQHIFLDSGVLPAIKDWLSPLPDNSLPHINIRKILLRILFDLPPIDRMMLKKSGVGRAVMLLFKHPKENMENKKVAGKIISNWARPIFNVSTNMSDMSREERESRDKATLPETKKRRLSSGADSSRNRLDD--DDENRPRKPGDKGWVGRARVPLPSHKDYINRPESKIDYDVAK---SSKRELNRFEKQARKVKDRRGNNISSTNRKAVGVSLNGSKLAL 2058
++SDF++M+ +KK+ KRR+ D T + D DD+++ MI +M+E A+EDR LN K A KKL +LP V HL+K +L+ F+DSGV+ AIK+WLSPLPD SLP + IR+ LL+IL +LP + + LK SG+GRAVM L+KHPKE+ NK +AGK+I+ W+RPIF +++N M+REERE RD +P+ ++R S+G + R L+ E + +PGD G+ RARVP+PS+KDY+ RP+ ++ + ++ +SK+ ++R +KQ RK D R + S+ AV +S+ G+K+ L
Sbjct: 525 FLSDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQ-RRRMNSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPSNKDYVVRPKWNVEMESSRFQATSKKGISRLDKQMRKFTDIRKKSRSA---HAVKISIEGNKMPL 819 The following BLAST results are available for this feature:
BLAST of TCONS_00002513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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