TCONS_00002513-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002513-protein
Unique Name	TCONS_00002513-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	650

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002513-protein ID=TCONS_00002513-protein|Name=TCONS_00002513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp
MAEKQTEDNLDLSLESTDNDATEGAPVIAHKQMQDVSGSGASTPMEADDS
KPASPIEADDSKPASPIEADNSKLASPMDQTENEAETETNENKTESFEAI
SDDEEEQNNESKSTEDNSNDDNEKTGFSPISPSDESLIKSDEIETTQTVE
KSVENDDKDDLDAPVPSPFSDIGDVEDMGTGTDQELISDIMKDSNEADFS
IGNVSTESVIEQKNENDDQTEDKPQENLPSDVQEEIVTIDAAKEETTPAE
TTSDSIEVTALDGPSTSNVEENKDEEKAEAKAGEDDGEEKKEDEDDDEDN
LIANIFGDSDDEEEEFEGFAEEEIGEEESSAANVEQPEEEERRDDSSGDE
RMPDRSEYVSDFDLMMAKKKAQRSKRRKKDDYETLGDQDDLINEMIKQMH
ECAKEDRMLNQCGKAATKKLKMLPVVSTHLRKANLQHIFLDSGVLPAIKD
WLSPLPDNSLPHINIRKILLRILFDLPPIDRMMLKKSGVGRAVMLLFKHP
KENMENKKVAGKIISNWARPIFNVSTNMSDMSREERESRDKATLPETKKR
RLSSGADSSRNRLDDDDENRPRKPGDKGWVGRARVPLPSHKDYINRPESK
IDYDVAKSSKRELNRFEKQARKVKDRRGNNISSTNRKAVGVSLNGSKLAL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001344	XLOC_001344	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002513	TCONS_00002513	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017923	TFIIS_N

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 606..626
None	No IPR available	GENE3D	1.20.930.10		coord: 443..542 e-value: 2.2E-10 score: 39.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..357
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 528..584
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 614..637
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 471..521 e-value: 4.3E-11 score: 42.6
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 446..524 score: 16.761

Blast

[Close]

BLAST of TCONS_00002513-protein vs. Swiss-Prot (Human)
Match: IWS1 (Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 4.330e-90
Identity = 161/362 (44.48%), Postives = 246/362 (67.96%), Query Frame = 0

Query:  296 DDEDNLIANIFGDS-DDEEEEFEGFAEEEIGEEESSAANVEQPEEEERRDDSSGDERMPDRSEYVSDFDLMMAKKKAQRSKRRKKDDYET-LGDQDDLINEMIKQMHECAKEDRMLNQCGKAATKKLKMLPVVSTHLRKANLQHIFLDSGVLPAIKDWLSPLPDNSLPHINIRKILLRILFDLPPIDRMMLKKSGVGRAVMLLFKHPKENMENKKVAGKIISNWARPIFNVSTNMSDMSREERESRDKATLPETKKRRLSSGADSSRNRLDD--DDENRPRKPGDKGWVGRARVPLPSHKDYINRPESKIDYDVAK---SSKRELNRFEKQARKVKDRRGNNISSTNRKAVGVSLNGSKLAL 650
            ++E+NLIA+IFG+S D+EEEEF GF +E++ EEE     V++ E+ +  D+    + M    +++SDF++M+ +KK+   KRR+  D  T + D DD+++ MI +M+E A+EDR LN   K A KKL +LP V  HL+K +L+  F+DSGV+ AIK+WLSPLPD SLP + IR+ LL+IL +LP + +  LK SG+GRAVM L+KHPKE+  NK +AGK+I+ W+RPIF +++N   M+REERE RD   +P+ ++R  S+G  + R  L+     E +  +PGD G+  RARVP+PS+KDY+ RP+  ++ + ++   +SK+ ++R +KQ RK  D R  + S+    AV +S+ G+K+ L
Sbjct:  467 NEEENLIADIFGESGDEEEEEFTGFNQEDL-EEEKGETQVKEAEDSDSDDNIKRGKHM----DFLSDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQ-RRRMNSTGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPSNKDYVVRPKWNVEMESSRFQATSKKGISRLDKQMRKFTDIRKKSRSA---HAVKISIEGNKMPL 819

The following BLAST results are available for this feature:

BLAST of TCONS_00002513-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002513-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IWS1	4.330e-90	44.48	Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 ...	[more]

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TCONS_00002513-protein (polypeptide) - C. hemisphaerica