TCONS_00002495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002495
Unique NameTCONS_00002495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002495 ID=TCONS_00002495|Name=TCONS_00002495|organism=Clytia hemisphaerica|type=transcript|length=1574bp
AGATGGGAGACCACCAATCTTTTTTGAGGCAAAACAAACAATAACATACG
ataacaaatcaaacaaaaaatatataagatATTTGTTTGATTCAAAAATG
GCTTGTGGAGCTATCACCGGTTTTGAAGTATATTATTATAAATGCCCATC
TAGAACCAGTTCAATGACATCATTTGGACATATCAATGCTCCAACTTATT
CCGAAAATGTAAAAGAGTATCAAGGGGAATGTGTTGAAAACGCTGTAAAA
GTTGGTGATGAACTATTAACAATGAAGTGTTTATGGAATGGAACGATTGC
GTCAATGACTGGACAATGCATTTGTTTACAGGGATACCAGAGAGAAGGAA
ATGAGTGTATAAAATGTGACAGTCAACATTTCAAGCCAACACAAGGAAAT
GAACAGTGCACACAATGTGGCTTAAACTCACTTTCTAGCATTGATCGAAC
TGTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCAGTGAAGTCAACA
ATCCTTTAGCTGTCTGTTACAgAATCCCAGACACTCTCCATTCATTCAGC
ATTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTGGTCTCATCCATC
ACaagtcaacaaaacaaatatttaCATTGTGGATTGCAAAGGTTGTCCCT
CTGGTGTTTTCCCTAAAACCACAACCAACAAATTTATTACCATCAATGGT
CTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTTCTCAAGTGAAGT
TTCAAGGATGATcggtgaaaatcaaacttcgGAATTCAAATCGTTCAAAA
CATTACCAGGAGTCCCTGGCATGGTCCAAAATCTGCGACAAAAGACACTA
GACAATGGAAAGTTCGAATACATTGAACTGAGTTGGGACGAGCCTTTTGC
TAAAGGAAACGATGACATTACATATTTAGTAAAATATGATGGCTCTACAA
GGTCTACAACCTCAACCCGTTACATCATACATGAGATCACTGAAATTGAC
AATTTTAAAGTAGCGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGG
TCAATCAGCTATTTTGCATATAAAATTTCGTCCTGTCACCGAATCGAAAA
ATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTACTTTTA
TTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAGAAAATT
CTCAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTG
ATGGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGA
TTAACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAA
AAATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAA
GTCAAAATTTAAGCTAAGTTTTTTTGTAATAAGTGAACATGTTTGTTTGT
GGTATCGACCTGGCAAGAAGAGTTTTCGGTAGAGTGGTTTGGATTTAGTG
AAAATACAATGATGTTGAAGATTGATACTATCAAGTCACTTTATCTGCTT
TTGGTGACAGATATGATAGAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00002495-protein

>TCONS_00002495-protein ID=TCONS_00002495-protein|Name=TCONS_00002495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
DGRPPIFFEAKQTITYDNKSNKKYIRYLFDSKMACGAITGFEVYYYKCPS
RTSSMTSFGHINAPTYSENVKEYQGECVENAVKVGDELLTMKCLWNGTIA
SMTGQCICLQGYQREGNECIKCDSQHFKPTQGNEQCTQCGLNSLSSIDRT
VCNCLYKNKREVSEVNNPLAVCYRIPDTLHSFSIANITSSSLEITWSHPS
QVNKTNIYIVDCKGCPSGVFPKTTTNKFITINGLGAFADYEISVTFSSEV
SRMIGENQTSEFKSFKTLPGVPGMVQNLRQKTLDNGKFEYIELSWDEPFA
KGNDDITYLVKYDGSTRSTTSTRYIIHEITEIDNFKVAAQVSVNGQVLVG
QSAILHIKFRPVTESKNLSVGVIVTIVGLALLLFLVVGGVLVFYYRKRKF
SRKAVDENNGDYMIPIDGEPTYESINYAKMTVRLTDNNPYYGVSESTPNK
NEDQELAYLDLTNID
Run BLAST on NCBI

transcript from alignment at sc0000020:266819..271884-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002495 ID=TCONS_00002495|Name=TCONS_00002495|organism=Clytia hemisphaerica|type=transcript|length=5066bp|location=Sequence derived from alignment at sc0000020:266819..271884- (Clytia hemisphaerica)
AGATGGGAGACCACCAATCTTTTTTGAGGCAAAACAAACAATAACATACG
ATAACAAATCAAACAAAAAATATATAAGATATTTGTTTGATTCAAAAATG
GCTTGTGGAGCTATCACCGGTTTTGAAGTATATTATTATAAATGCCCATC
TAGAACCAGTTCAATGACATCATTTGGACATATCAATGCTCCAACTTATT
CCGAAAATGTAAAAGAGTATCAAGGGGAATGTGTTGAAAACGCTGTAAAA
GTTGGTGATGAACTATTAACAATGAAGTGTTTATGGAATGGAACGATTGC
GTCAATGACTGGACAATGCATTTGTTTACAGGGATACCAGAGAGAAGGAA
ATGAGTGTATAAGTAAGTATTTTAAAATTTACTTTCGATATTGAAAGTAT
CTTCTACCATGACTCATAAATAATCATGCTTCTACTACTATTGTCCCTCA
TAGTTTCTTCTCTCTGGGCTCCTCTCTCTCTCTCTTTTTTCCCAATGCTT
TTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCTGTGTT
CGTTCGTTCGTCTGTTACCAACTTTTCATAGAATTGAATCATAAGAATCT
TTTGATTTTTGGTCAGTACAAAGGAGCAAAATGGTAATGGCCAAAATGTG
ACGGAGCCCGAATTTCGATAAAAAAATGTTTTTGGGCAAATTTGGGCCAA
AAAACAGCTAAAAATTGTTTTTTTTTGGACTTTGTGAAAAATTGGATCAT
TAATTTTTTCTAATTTTTTGCATGATAGTAGGGTACCATTATAGGTAAAA
GATGGCTTAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTTAAAAAACGC
ATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAATTTTCTTAG
TCAAATTACTCAATTTTTTTATGAGACAGAAGTTTTTTTCGCTCATGAGG
GTTTATTTTTGAAGATTATGTGTGTTTAGACATGAAATTTTGGTTGCTTG
GCGTGTTTTTATAGAAAAACTAGCCAAATTCGATATTATTTTATAAGCAC
ATTATCAATTACTTAGGTATTAGCTTTTCTTGAGATTGGCTCTTTCATTC
TTTATGATTTTTTGCACAAAGATGCATATTTTACTATAAACCCTCGAAAA
ATTGGATCATTGTTTTTTTCTGATTTTTTGCATTAAAGTAGGTAAAAGAT
GGCTCAAGCAGAACTTTTCAGCTCAAAAAACGCATCTTCATCTATAGGAA
TCACTATTATTAAGCATACATCAATGTTTTTAGCCAAATTACTCAATTTT
TTGATGTTTTTTTTGCTCACAAAGTCTTAAATATGAAAGAATATTTCAAG
AGCAAGAAATTTTGGTTTCTAAACGTTTTTTTTTTAAAGAATCAAACGAC
TAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAACGGT
CATGCTCACGTGTGTTAAATGCAAAACCAGGTAGGTCCATAAAAGTATAA
CTTGTTTCATAAGAAGCAGTACATTTGGGCCATTTTTCGTAATATTCAGA
CATTATTTTCTGAAATCTTAGAAATGATTATTATCAAAATAGTTGGTTCT
TAGGTTAAGGTCAAATTTTTCTTGTCCCTCTCTCCTCTCCTCCTCCTGTA
TTTTTAAAATTATGAATATACACACTCTCTTAGAATGTGACAGTCAACAT
TTCAAGCCAACACAAGGAAATGAACAGTGCACACAATGTGGCTTAAACTC
ACTTTCTAGCATTGATCGAACTGTATGTAATTGTCTGTATAAAAACAAAC
GTGAAGTCAGTGAAGTCAACAATCCTTTAGCTGTCTGTTACAGTAAGTTA
CTTGATATACATTACCCATGTCACGGTCATTGTGTGTTTATTAAAATAAT
TTCCATGTCGGCCGTTTCTTGTAGCGATTTAAGTGTCATTTATATTATAT
ATTTTGAAGGAATCCCAGACACTCTCCATTCATTCAGCATTGCAAACATA
ACCAGTAGCTCTCTAGAAATCACTTGGTCTCATCCATCACAAGTCAACAA
AACAAATATTTACATTGTGGATTGCAAAGGTTGTCCCTCTGGTGTTTTCC
CTAAAACCACAACCAACAAATTTATTACCATCAATGGTCTTGGTGCGTTT
GCTGATTATGAGATCAGTGTGACTTTCTCAAGTGAAGTTTCAAGGATGAT
CGGTGAAAATCAAACTTCGGAATTCAAATCGTTCAAAACATTACCAGGAG
GTAAGCTCTTATTATTGCAAAAATAATAAAGAAAATTAAAATTAAAATTC
TGTCTTAAAAGTTTGTGAACACTTTACTTGTTAATAATTTCTCAGCACTC
ATTTTTATGCTGAGTTAAAATTCAAAAACACCGTTGGAAAGATATTCTTG
AGATTAAAAAAAAAAGAAAATTGAATTGACAAAACGATGATTAGAATATT
TGAACATGATTTCACAATCTTTGTTTACTCTCGGGTACTTAATAGCCGTT
TGGAATAAGCGGGGGGGGGGGGGGTTGGAAAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTTGGAAAAAATCTCAAAATTTAATAAGTGGGGGGTTGGAAT
AAAAATTTCCTGGGTGGAAAATTTTCGAAAGGAGGCTAATACAGCAGAAT
TAGGGCAAAAGAGTAGGTAATTATTTTGGCTATCTTTGGTCATTATTTGC
CGTTTTTTCCCTTAAATGTACGATTAACATTGCTTGACGGAGACTCATAC
TGGAGATTTTTTTGTTTTAATCTTTAGTCCCTGGCATGGTCCAAAATCTG
CGACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAACTGAGTTG
GGACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTAGTAAAAT
ATGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCATACATGAG
ATCACTGAAATTGACAATTTTAAAGTAGGTTTCCCGGGAACGTTTTCTCT
AGTCTGGAGATCCATACTCTCTATTCAAACGTTTACACCACATAAGCAAA
AATCCCATCCGAAGCTTCTCATTGAGAGTATGGTATTTTTGACCCAGTTT
GAATTTGCTTACATTTGGTTTGAATTTCTTGCCAAAAAAGCTGTTGATAA
GATTAGCCAATCAGGCAGTTGCGCACTTCAAATCAAAACAATAATATGAC
GAGATTTCAACAATTGTTTAACAGTTAATAGAATTACGCGACCAGATTTG
GCATCAACAAAAATACCCGGCTGCTCTGTTATTTCTATATCACTATTCGT
TTTAACTAAATTTTATACTTCAAAATCACAGGAACAGAGTAGACGGGCTA
CGTTTTCTTTTGAAACCTTCTTCTCGATAGGGTTTACCTTGTCCTTTGGC
ATATTATAAAAAAGAGGCTTTGAGTCGAATGAAAACTTTTTAATAAGCTT
GCGGCCGAGTTTATAGCCGTTCTTAAATCTGGTTGGTAATCGTGCCCTGA
TCTTCACTGTGATTTAGTCAAATGGAAGAACTGTTTATGATAGCTAATTA
AATCATTCAATTTTATAGGTAGCGGCACAAGTTTCAGTCAATGGACAAGT
ATTGGTTGGTCAATCAGCTATTTTGCATATAAAATTTCGTCCTGTCACCG
GTACACGAAACTGATTTTCCTTCTTTCGTAATAACTATTTTTGAATTTGT
TTCAAAAGTAATTGAGGTCCTAGAACCATTGAATTTAAATCAACTTTTCC
TAAGCAAGGAAAAATTGAAACTTTAACTCATTTACAATGACGGTTTGAAT
TTTGAATCAAGCGCTTTCTTTGTCATCACGCGATAGATTCAAAAGTTTTG
CAATATATTTGATTTTTGATTCGAAATTTATGTGAAAACGACGCTTTTCG
AAGTAAAATAAAGTGGCATCATTTTCAAGCCAAAATTTATAGCTCCTCCG
GGGTTTTAATTGCGATGGTTTCCTCTTTGCTAGTTACGTCACTCTGATTC
TCACCCAGACCCAAAGACAAAGTATGTCTAAAAGTTCACAGGGAATCCAG
TTACTCAAAATAGTATCATTATATTTTCCTACTTTTTTATCGTAGAATCG
AAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTACT
TTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAGGT
AGGCGGATGGGAGGATTTAACTTTGTAATCATTGTCGACGGAGAGAGTCT
CCCATTTTATACAGTTGTCTTGAAGGTAGGGGGAGCCGTGGTACCGCTTT
TTTACCTAGATCTTCCTACTCACCCTTGAATCTTTTATGTAGATACTGAC
ATTAGGTAGGTAGGTAGATATTTTAAGTTTTAAGGTGTAGTTGGTAGTGT
TAAAAGTTACGTCTCCGTGAATTACATAAAAGATGATTTTTGTCTTAAAG
TTCTGAATAACTTGCAAAAATTTAATTTTCTGAGTATGATTACAATTTCT
TCTGTATTGGTCCTGTAACCTCAACCGTATTTCAAAGAAGTTCAGAAACT
CACTCTGTAATGGAAGGCTTCAAATTCTTGATGAGTTTCAAGCTCGATAA
CAAAATTCCAACTTTGGTTTCATGTTTTCTTACTAGAAAATTCTCAAGGA
AAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTGATGGAGAA
CCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGATTAACTGA
TAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAAAAATGAGG
ATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAAGTCAAAAT
TTAAGCTAAGTTTTTTTGTAATAAGTGAACATGTTTGTTTGTGGTATCGA
CCTGGCAAGAAGAGTTTTCGGTAGAGTGGTTTGGATTTAGTGAAAATACA
ATGATGTTGAAGATTGATACTATCAAGTCACTTTATCTGCTTTTGGTGAC
AGATATGATAGAGGAC

Coding sequence (CDS) from alignment at sc0000020:266819..271884-

>TCONS_00002495 ID=TCONS_00002495|Name=TCONS_00002495|organism=Clytia hemisphaerica|type=CDS|length=9786bp|location=Sequence derived from alignment at sc0000020:266819..271884- (Clytia hemisphaerica)
AAAATTCTCAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATAC
CTATTGATGGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACT
GTCCGATTAACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCC
AAACAAAAATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCG
ATTGAAATCGAAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGAC
TTGCATTACTTTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTAC
AGAAAGAGCGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGGTCAAT
CAGCTATTTTGCATATAAAATTTCGTCCTGTCACCGTCCCTGGCATGGTC
CAAAATCTGCGACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGA
ACTGAGTTGGGACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATT
TAGTAAAATATGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATC
ATACATGAGATCACTGAAATTGACAATTTTAAAGTAGGAATCCCAGACAC
TCTCCATTCATTCAGCATTGCAAACATAACCAGTAGCTCTCTAGAAATCA
CTTGGTCTCATCCATCACAAGTCAACAAAACAAATATTTACATTGTGGAT
TGCAAAGGTTGTCCCTCTGGTGTTTTCCCTAAAACCACAACCAACAAATT
TATTACCATCAATGGTCTTGGTGCGTTTGCTGATTATGAGATCAGTGTGA
CTTTCTCAAGTGAAGTTTCAAGGATGATCGGTGAAAATCAAACTTCGGAA
TTCAAATCGTTCAAAACATTACCAGGAGAATGTGACAGTCAACATTTCAA
GCCAACACAAGGAAATGAACAGTGCACACAATGTGGCTTAAACTCACTTT
CTAGCATTGATCGAACTGTATGTAATTGTCTGTATAAAAACAAACGTGAA
GTCAGTGAAGTCAACAATCCTTTAGCTGTCTGTTACAGATGGGAGACCAC
CAATCTTTTTTGAGGCAAAACAAACAATAACATACGATAACAAATCAAAC
AAAAAATATATAAGATATTTGTTTGATTCAAAAATGGCTTGTGGAGCTAT
CACCGGTTTTGAAGTATATTATTATAAATGCCCATCTAGAACCAGTTCAA
TGACATCATTTGGACATATCAATGCTCCAACTTATTCCGAAAATGTAAAA
GAGTATCAAGGGGAATGTGTTGAAAACGCTGTAAAAGTTGGTGATGAACT
ATTAACAATGAAGTGTTTATGGAATGGAACGATTGCGTCAATGACTGGAC
AATGCATTTGTTTACAGGGATACCAGAGAGAAGGAAATGAGTGTATAAAA
AATTCTCAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCT
ATTGATGGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGT
CCGATTAACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAA
ACAAAAATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGAT
TGAAATCGAAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTT
GCATTACTTTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAG
AAAGAGCGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGGTCAATCA
GCTATTTTGCATATAAAATTTCGTCCTGTCACCGTCCCTGGCATGGTCCA
AAATCTGCGACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAAC
TGAGTTGGGACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTA
GTAAAATATGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCAT
ACATGAGATCACTGAAATTGACAATTTTAAAGTAGGAATCCCAGACACTC
TCCATTCATTCAGCATTGCAAACATAACCAGTAGCTCTCTAGAAATCACT
TGGTCTCATCCATCACAAGTCAACAAAACAAATATTTACATTGTGGATTG
CAAAGGTTGTCCCTCTGGTGTTTTCCCTAAAACCACAACCAACAAATTTA
TTACCATCAATGGTCTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACT
TTCTCAAGTGAAGTTTCAAGGATGATCGGTGAAAATCAAACTTCGGAATT
CAAATCGTTCAAAACATTACCAGGAGAATGTGACAGTCAACATTTCAAGC
CAACACAAGGAAATGAACAGTGCACACAATGTGGCTTAAACTCACTTTCT
AGCATTGATCGAACTGTATGTAATTGTCTGTATAAAAACAAACGTGAAGT
CAGTGAAGTCAACAATCCTTTAGCTGTCTGTTACAGATGGGAGACCACCA
ATCTTTTTTGAGGCAAAACAAACAATAACATACGATAACAAATCAAACAA
AAAATATATAAGATATTTGTTTGATTCAAAAATGGCTTGTGGAGCTATCA
CCGGTTTTGAAGTATATTATTATAAATGCCCATCTAGAACCAGTTCAATG
ACATCATTTGGACATATCAATGCTCCAACTTATTCCGAAAATGTAAAAGA
GTATCAAGGGGAATGTGTTGAAAACGCTGTAAAAGTTGGTGATGAACTAT
TAACAATGAAGTGTTTATGGAATGGAACGATTGCGTCAATGACTGGACAA
TGCATTTGTTTACAGGGATACCAGAGAGAAGGAAATGAGTGTATAAAAAA
TTCTCAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTAT
TGATGGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCC
GATTAACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAAC
AAAAATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTG
AAATCGAAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGC
ATTACTTTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAA
AGAGCGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGGTCAATCAGC
TATTTTGCATATAAAATTTCGTCCTGTCACCGTCCCTGGCATGGTCCAAA
ATCTGCGACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAACTG
AGTTGGGACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTAGT
AAAATATGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCATAC
ATGAGATCACTGAAATTGACAATTTTAAAGTAGGAATCCCAGACACTCTC
CATTCATTCAGCATTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTG
GTCTCATCCATCACAAGTCAACAAAACAAATATTTACATTGTGGATTGCA
AAGGTTGTCCCTCTGGTGTTTTCCCTAAAACCACAACCAACAAATTTATT
ACCATCAATGGTCTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTT
CTCAAGTGAAGTTTCAAGGATGATCGGTGAAAATCAAACTTCGGAATTCA
AATCGTTCAAAACATTACCAGGAGAATGTGACAGTCAACATTTCAAGCCA
ACACAAGGAAATGAACAGTGCACACAATGTGGCTTAAACTCACTTTCTAG
CATTGATCGAACTGTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCA
GTGAAGTCAACAATCCTTTAGCTGTCTGTTACAGATGGGAGACCACCAAT
CTTTTTTGAGGCAAAACAAACAATAACATACGATAACAAATCAAACAAAA
AATATATAAGATATTTGTTTGATTCAAAAATGGCTTGTGGAGCTATCACC
GGTTTTGAAGTATATTATTATAAATGCCCATCTAGAACCAGTTCAATGAC
ATCATTTGGACATATCAATGCTCCAACTTATTCCGAAAATGTAAAAGAGT
ATCAAGGGGAATGTGTTGAAAACGCTGTAAAAGTTGGTGATGAACTATTA
ACAATGAAGTGTTTATGGAATGGAACGATTGCGTCAATGACTGGACAATG
CATTTGTTTACAGGGATACCAGAGAGAAGGAAATGAGTGTATAAAAAATT
CTCAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTG
ATGGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGA
TTAACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAA
AAATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAA
ATCGAAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCAT
TACTTTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAG
AGCGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGGTCAATCAGCTA
TTTTGCATATAAAATTTCGTCCTGTCACCGTCCCTGGCATGGTCCAAAAT
CTGCGACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAACTGAG
TTGGGACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTAGTAA
AATATGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCATACAT
GAGATCACTGAAATTGACAATTTTAAAGTAGGAATCCCAGACACTCTCCA
TTCATTCAGCATTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTGGT
CTCATCCATCACAAGTCAACAAAACAAATATTTACATTGTGGATTGCAAA
GGTTGTCCCTCTGGTGTTTTCCCTAAAACCACAACCAACAAATTTATTAC
CATCAATGGTCTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTTCT
CAAGTGAAGTTTCAAGGATGATCGGTGAAAATCAAACTTCGGAATTCAAA
TCGTTCAAAACATTACCAGGAGAATGTGACAGTCAACATTTCAAGCCAAC
ACAAGGAAATGAACAGTGCACACAATGTGGCTTAAACTCACTTTCTAGCA
TTGATCGAACTGTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCAGT
GAAGTCAACAATCCTTTAGCTGTCTGTTACAGATGGGAGACCACCAATCT
TTTTTGAGGCAAAACAAACAATAACATACGATAACAAATCAAACAAAAAA
TATATAAGATATTTGTTTGATTCAAAAATGGCTTGTGGAGCTATCACCGG
TTTTGAAGTATATTATTATAAATGCCCATCTAGAACCAGTTCAATGACAT
CATTTGGACATATCAATGCTCCAACTTATTCCGAAAATGTAAAAGAGTAT
CAAGGGGAATGTGTTGAAAACGCTGTAAAAGTTGGTGATGAACTATTAAC
AATGAAGTGTTTATGGAATGGAACGATTGCGTCAATGACTGGACAATGCA
TTTGTTTACAGGGATACCAGAGAGAAGGAAATGAGTGTATAAAAAATTCT
CAAGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTGAT
GGAGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGATT
AACTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAAAA
ATGAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAAAT
CGAAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTA
CTTTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAG
CGGCACAAGTTTCAGTCAATGGACAAGTATTGGTTGGTCAATCAGCTATT
TTGCATATAAAATTTCGTCCTGTCACCGTCCCTGGCATGGTCCAAAATCT
GCGACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAACTGAGTT
GGGACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTAGTAAAA
TATGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCATACATGA
GATCACTGAAATTGACAATTTTAAAGTAGGAATCCCAGACACTCTCCATT
CATTCAGCATTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTGGTCT
CATCCATCACAAGTCAACAAAACAAATATTTACATTGTGGATTGCAAAGG
TTGTCCCTCTGGTGTTTTCCCTAAAACCACAACCAACAAATTTATTACCA
TCAATGGTCTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTTCTCA
AGTGAAGTTTCAAGGATGATCGGTGAAAATCAAACTTCGGAATTCAAATC
GTTCAAAACATTACCAGGAGAATGTGACAGTCAACATTTCAAGCCAACAC
AAGGAAATGAACAGTGCACACAATGTGGCTTAAACTCACTTTCTAGCATT
GATCGAACTGTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCAGTGA
AGTCAACAATCCTTTAGCTGTCTGTTACAGATGGGAGACCACCAATCTTT
TTTGAGGCAAAACAAACAATAACATACGATAACAAATCAAACAAAAAATA
TATAAGATATTTGTTTGATTCAAAAATGGCTTGTGGAGCTATCACCGGTT
TTGAAGTATATTATTATAAATGCCCATCTAGAACCAGTTCAATGACATCA
TTTGGACATATCAATGCTCCAACTTATTCCGAAAATGTAAAAGAGTATCA
AGGGGAATGTGTTGAAAACGCTGTAAAAGTTGGTGATGAACTATTAACAA
TGAAGTGTTTATGGAATGGAACGATTGCGTCAATGACTGGACAATGCATT
TGTTTACAGGGATACCAGAGAGAAGGAAATGAGTGTATAAAAAATTCTCA
AGGAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTGATGG
AGAACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGATTAA
CTGATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAAAAAT
GAGGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAAATCG
AAAAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTACT
TTTATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAGCG
GCACAAGTTTCAGTCAATGGACAAGTATTGGTTGGTCAATCAGCTATTTT
GCATATAAAATTTCGTCCTGTCACCGTCCCTGGCATGGTCCAAAATCTGC
GACAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAACTGAGTTGG
GACGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTAGTAAAATA
TGATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCATACATGAGA
TCACTGAAATTGACAATTTTAAAGTAGGAATCCCAGACACTCTCCATTCA
TTCAGCATTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTGGTCTCA
TCCATCACAAGTCAACAAAACAAATATTTACATTGTGGATTGCAAAGGTT
GTCCCTCTGGTGTTTTCCCTAAAACCACAACCAACAAATTTATTACCATC
AATGGTCTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTTCTCAAG
TGAAGTTTCAAGGATGATCGGTGAAAATCAAACTTCGGAATTCAAATCGT
TCAAAACATTACCAGGAGAATGTGACAGTCAACATTTCAAGCCAACACAA
GGAAATGAACAGTGCACACAATGTGGCTTAAACTCACTTTCTAGCATTGA
TCGAACTGTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCAGTGAAG
TCAACAATCCTTTAGCTGTCTGTTACAGATGGGAGACCACCAATCTTTTT
TGAGGCAAAACAAACAATAACATACGATAACAAATCAAACAAAAAATATA
TAAGATATTTGTTTGATTCAAAAATGGCTTGTGGAGCTATCACCGGTTTT
GAAGTATATTATTATAAATGCCCATCTAGAACCAGTTCAATGACATCATT
TGGACATATCAATGCTCCAACTTATTCCGAAAATGTAAAAGAGTATCAAG
GGGAATGTGTTGAAAACGCTGTAAAAGTTGGTGATGAACTATTAACAATG
AAGTGTTTATGGAATGGAACGATTGCGTCAATGACTGGACAATGCATTTG
TTTACAGGGATACCAGAGAGAAGGAAATGAGTGTATAAAAAATTCTCAAG
GAAAGCCGTTGACGAAAACAATGGAGATTACATGATACCTATTGATGGAG
AACCTACGTACGAATCGATCAATTATGCTAAAATGACTGTCCGATTAACT
GATAACAACCCCTATTACGGTGTTTCCGAAAGTACGCCAAACAAAAATGA
GGATCAAGAGCTTGCCTATTTGGATTTAACCAATATCGATTGAAATCGAA
AAATCTTTCGGTTGGTGTAATTGTTACAATCGTTGGACTTGCATTACTTT
TATTCTTAGTTGTTGGTGGAGTTTTGGTTTTCTACTACAGAAAGAGCGGC
ACAAGTTTCAGTCAATGGACAAGTATTGGTTGGTCAATCAGCTATTTTGC
ATATAAAATTTCGTCCTGTCACCGTCCCTGGCATGGTCCAAAATCTGCGA
CAAAAGACACTAGACAATGGAAAGTTCGAATACATTGAACTGAGTTGGGA
CGAGCCTTTTGCTAAAGGAAACGATGACATTACATATTTAGTAAAATATG
ATGGCTCTACAAGGTCTACAACCTCAACCCGTTACATCATACATGAGATC
ACTGAAATTGACAATTTTAAAGTAGGAATCCCAGACACTCTCCATTCATT
CAGCATTGCAAACATAACCAGTAGCTCTCTAGAAATCACTTGGTCTCATC
CATCACAAGTCAACAAAACAAATATTTACATTGTGGATTGCAAAGGTTGT
CCCTCTGGTGTTTTCCCTAAAACCACAACCAACAAATTTATTACCATCAA
TGGTCTTGGTGCGTTTGCTGATTATGAGATCAGTGTGACTTTCTCAAGTG
AAGTTTCAAGGATGATCGGTGAAAATCAAACTTCGGAATTCAAATCGTTC
AAAACATTACCAGGAGAATGTGACAGTCAACATTTCAAGCCAACACAAGG
AAATGAACAGTGCACACAATGTGGCTTAAACTCACTTTCTAGCATTGATC
GAACTGTATGTAATTGTCTGTATAAAAACAAACGTGAAGTCAGTGAAGTC
AACAATCCTTTAGCTGTCTGTTACAGATGGGAGACCACCAATCTTTTTTG
AGGCAAAACAAACAATAACATACGATAACAAATCAAACAAAAAATATATA
AGATATTTGTTTGATTCAAAAATGGCTTGTGGAGCTATCACCGGTTTTGA
AGTATATTATTATAAATGCCCATCTAGAACCAGTTCAATGACATCATTTG
GACATATCAATGCTCCAACTTATTCCGAAAATGTAAAAGAGTATCAAGGG
GAATGTGTTGAAAACGCTGTAAAAGTTGGTGATGAACTATTAACAATGAA
GTGTTTATGGAATGGAACGATTGCGTCAATGACTGGACAATGCATTTGTT
TACAGGGATACCAGAGAGAAGGAAATGAGTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001335XLOC_001335Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002495-proteinTCONS_00002495-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002495-exon-sc0000020-1575043694:271523..271884TCONS_00002495-exon-sc0000020-1575043694:271523..271884Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1575043694:270043..270201TCONS_00002495-exon-sc0000020-1575043694:270043..270201Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1575043694:269635..269925TCONS_00002495-exon-sc0000020-1575043694:269635..269925Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1575043694:268857..269057TCONS_00002495-exon-sc0000020-1575043694:268857..269057Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1575043694:268185..268262TCONS_00002495-exon-sc0000020-1575043694:268185..268262Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1575043694:267637..267739TCONS_00002495-exon-sc0000020-1575043694:267637..267739Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1575043694:266819..267198TCONS_00002495-exon-sc0000020-1575043694:266819..267198Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1510915933:271523..271884TCONS_00002495-exon-sc0000020-1510915933:271523..271884Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1510915933:270043..270201TCONS_00002495-exon-sc0000020-1510915933:270043..270201Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1510915933:269635..269925TCONS_00002495-exon-sc0000020-1510915933:269635..269925Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1510915933:268857..269057TCONS_00002495-exon-sc0000020-1510915933:268857..269057Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1510915933:268185..268262TCONS_00002495-exon-sc0000020-1510915933:268185..268262Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1510915933:267637..267739TCONS_00002495-exon-sc0000020-1510915933:267637..267739Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1510915933:266819..267198TCONS_00002495-exon-sc0000020-1510915933:266819..267198Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1491911889:271523..271884TCONS_00002495-exon-sc0000020-1491911889:271523..271884Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1491911889:270043..270201TCONS_00002495-exon-sc0000020-1491911889:270043..270201Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1491911889:269635..269925TCONS_00002495-exon-sc0000020-1491911889:269635..269925Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1491911889:268857..269057TCONS_00002495-exon-sc0000020-1491911889:268857..269057Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1491911889:268185..268262TCONS_00002495-exon-sc0000020-1491911889:268185..268262Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1491911889:267637..267739TCONS_00002495-exon-sc0000020-1491911889:267637..267739Clytia hemisphaericaexon
TCONS_00002495-exon-sc0000020-1491911889:266819..267198TCONS_00002495-exon-sc0000020-1491911889:266819..267198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:266819..271884 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.75374	0.633633	0.647424	0.489448	6.06371	5.12399	4.17694	3.59757	2.94256	3.68207	4.40689	2.14834	10.2644	9.10423	4.39195	4.73387	3.04377	3.60355	8.21917	11.9245	2.87616	2.31664	1.55397	2.06958	3.68351	3.26586	3.6708	2.05388	1.81943	1.3814
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003961FN3_dom
IPR009030Growth_fac_rcpt_
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00002495 vs. Swiss-Prot (Human)
Match: EPHA7 (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 6.253e-20
Identity = 81/310 (26.13%), Postives = 128/310 (41.29%), Query Frame = 2 
Query:   62 NKKYIRYLFDSKMACGAITGFEVYYYKCPSRTSSMTSFGHINAPTYSENVKEYQGECVENAVKVGDELLTMKCLWNGTIASMTGQCICLQGYQREGNECIKCDSQHFKPTQGNEQCTQCGLNSLSSID-RTVCNCLYKNKREVSEVNNPLAVCYRIPDTLHSFSIANITSSSLEITWSHPSQVNKTN--IYIVDCKGCPS------------GVFPKTT--TNKFITINGLGAFADYEISVTFSSEVSRMIGENQTSEFKSFKTLPGVPGMVQN-LRQKTLDNGKFEYIELSWDEPFAKGNDDITYLVKY 937
            +KK     F    AC A+   +VYY KC S   ++  F      +   ++ E +G CV +A +  +    M C   G      G+CIC  GYQ++G+ C  C    +K +  + QC++C  +S S  +  + C C     R  S  + P   C R P    +  I NI  +++ + WS P+     N   Y + CK C              G  P+ T   + ++T+  L A A+Y   V   + VS +    +     S  T    P  V   ++++ L       +ELSW EP         Y +KY
Sbjct:  178 SKKGFYLAFQDVGACIALVSVKVYYKKCWSIIENLAIFPDTVTGSEFSSLVEVRGTCVSSAEEEAENAPRMHCSAEGEWLVPIGKCICKAGYQQKGDTCEPCGRGFYKSSSQDLQCSRCPTHSFSDKEGSSRCECEDGYYRAPS--DPPYVACTRPPSAPQNL-IFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGSNIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSGVMKERVLQRS----VELSWQEPEHPNGVITEYEIKY 480
The following BLAST results are available for this feature:
BLAST of TCONS_00002495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EPHA76.253e-2026.13Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 ... [more]
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