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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002431 ID=TCONS_00002431|Name=TCONS_00002431|organism=Clytia hemisphaerica|type=transcript|length=861bp
AGGAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGC
CAATTGCAAATCAACCAATACCTTTACAGCAGATGCAATCATTGGACCAT
TATCCATCTAACCATAAATGCTTGGCTTGCACAGGATTGATATGCACGGG
ATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGCTGTCGCATCATCGA
ATCACGTTGATATGGCAATGACAATGAGAAACTACGAAGCTGCTGATATC
CATTCTCGACGAACAAAAACGTTGGCCATTGTTGCTATTGCCGTTGGAAC
TTTTTTACTTATTCTGTTTTTTATCCTCGCCTTTACTGCTGGTCGAAAGC
ACTTTTGATAGAGTTTATTATTCTCCGATTCAGTTTTGTTAAAGTAATAT
TTCCTTTTaacactttcaaccaatcattTTGTGCTATGCTAAATAATTTA
AGCGGGAACTAATATTGTCgcttttttcgtgatttttcggcaaaatcgcg
aaaattaaattCCACAAGCTATAAATTTGACCATTTCCCATCAAAAATCc
caaggaaaaaaaagaaatgtgtGCGAAAAAGGGAGAAACTGCAAAAATCG
ATTTCCacgaaatgtgattttttcaactttttcgactgcgaaaattagtt
cctgctAAAATTAGTTCACTTATATgtccttaagggctctgaccatagtc
aaaaattAGTATTTCAGTTTAATGTCGATATTTTGGCTGAAGGTTCCTTT
TAGgaactagcaaaaaactgcGTTTACAGAATTGTGAAATATTAATTCCT
TCGCCAGATATTTAGTATCAAACTTTGTGTATCTAAAACCTcatctttta
aaatcaaaact Run BLAST on NCBI transcript from alignment at sc0000020:304117..307451+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002431 ID=TCONS_00002431|Name=TCONS_00002431|organism=Clytia hemisphaerica|type=transcript|length=3335bp|location=Sequence derived from alignment at sc0000020:304117..307451+ (Clytia hemisphaerica)
AGGAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGC
CAATTGCAAATCAACCAATACCTTTACAGCAGGTTCGTAACTTATGGCTA
AGTTTGAATCTTCAtgatttgtgaaaaaaatcttcaatatatatatagta
ttttaatatttgcgcgcgtttcatactttcacaaaacacatctttttaca
tctttttatctgtggtggtgtctagataacactgcttggcctacctacac
aaccctatttccatcatataggaggatattttcacaaatggccgaaatcc
tgtgtaggtcgaaaactgaggaacagataatgtNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat
ttgtattgtctttttgttttgtgggtttttgtctttattgtttccatttt
gagtagttgaaggttttatacttctagactatatatatatatatatatgt
ataAATTAGTTTTCTCAATgtagacacatatttcatatcaggacagtgtc
tgtctattgttatagtatgctgatataagcaaaaaatgttttttcctctt
tctaatcaatcttgctccacatccgtgtcaaacCAGTGTGAAAAATCTtg
ctaaataaaattgaagaggagcaaacgatatcacttttatttaaatACAA
AACCTTTAATGATTTGTAACagagaaacaaaaaaaacaaaaaaNacacat
gagctgcattttagtctccattgccatattccattttaaatctgtatata
tttgaaataattctgtgtcgtgtttgaaaaatcaagccaccaatcgttaa
acgagacagatccagaaataaccattttcatgTANTCTTAGCAGAAAAGT
AACTTTGATCTTTTGACTACAATTTCTTCATATTTATAGAATCCAGTTGG
ATTTCCTGTTCAGATGCAATCATTGGACCATTATCCATCTAACCATAAAT
GCTTGGCTTGCACAGGATTGATATGCACGGGATGTACGTACTGTTGTTGT
CCAATAGGTATGGCTGCTGTCGCATCATCGAATCACGTAAGTGGCTACCA
TTATTGGCCATTATCACACCCCTGNTGTGTCGAGTAcgttgtcgagtttg
aaaatcatgccaCGTCCCACTGTCACTGTACTGACCGTTGtttaacagcg
acagatccagaagcaACATTGtgtcttattcaaatttacacatttcagtt
tatttacNATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGCTGTCGC
ATCATCGAATCACGTAAGTGGCTACCATTATTGGCCAttatcacacccct
gtctcacagccccggtgaaacctTTTTCCTCTGTGGGGATAAAGATTCtt
tttgaaatcccaatggggatagaaattctattcaatgttaaacaagaagc
ccgttgggcgtgaaggcccagcaaaagtgaAATGTTTGcgcgcgattttc
gcgaatttcggaatttctaaaaattccaaaaaatgtttaacaagatttca
aatttccccCAGGAAAGGGATGGCCAAAGGATTTAANNNNNNNNNNNNNN
NNNNNNNNNNAGCCctaaagctttatgaaaacttgagcaaaaactataag
atatgacagaatgttgaaaaaggtttacaaagaaaaatcactaaaaggtt
tctttggtttgaaaagtctctaaagcaaagaaaatattcaagaaagtatg
aatcaacacgAATCAATTTCCTcccttcgaccgccatcttgttttgtttt
gaaaacgtttgttgtttaaggagcgcgaaatcagaaaatatatctttttt
agccagtacccgactttagtaagcttttccctgtccagacggcaaaaagt
gtgatactggtattaagcgccgtttctaccaaaacggacagacagaagga
aacacggacaaaaaaatagtgaGACTCTCattaaaggcccactcgctagc
gctgggccaaaaatcCAGTGTGGATGGTTTTGAGTGCAATatttaaattg
aatttcgagtggggatgaaatcaaagtcaatttgccagtggggctgaaat
tccaaggCATTTTCCCAACGGGGACAAATTTTTAGCCacatttcccagtg
gggctgggataccagcgggtctgtgacatagGGGTGTATTATCTCAAGAA
TACACAGAGAGCCTGCAATctcccatttttctttctagcaatgaaagtga
aatctcacttttgtccctgtgacaaaatcttttcataggcgtagcgagat
accctgcaaaatttatggatgagagcggtttttacgacactgtaattatt
gtctttgtttcatcaaaagatAATGGATATGTCATAAACGTGTGCACTCC
CTCACAAATTTTGCAAGGTATCTCGCTTCGTCTAtgcttttgggtatttc
cctcactttttgtcccatgaaacaaaaaaagggtgggatggagcatgttg
cattgcaccaacgcgaaaaaaaattctcgtctccccaagcctttaatcat
tcatatatattttttcactttttatccAGGTTGATATGGCAATGACAATG
AGAAACTACGAAGCTGCTGATATCCATTCTCGACGAACAAAAACGTTGGC
CATTGTTGCTATTGCCGTTGGAACTTTTTTACTTATTCTGTTTTTTATCC
TCGCCTTTACTGCTGGTCGAAAGCACTTTTGATAGAGTTTATTATTCTCC
GATTCAGTTTTGTTAAAGTAATATTTCCTTTTaacactttcaaccaatca
ttTTGTGCTATGCTAAATAATTTAAGCGGGAACTAATATTGTCgcttttt
tcgtgatttttcggcaaaatcgcgaaaattaaattCCACAAGCTATAAAT
TTGACCATTTCCCATCAAAAATCccaaggaaaaaaaagaaatgtgtGCGA
AAAAGGGAGAAACTGCAAAAATCGATTTCCacgaaatgtgattttttcaa
ctttttcgactgcgaaaattagttcctgctAAAATTAGTTCACTTATATg
tccttaagggctctgaccatagtcaaaaattAGTATTTCAGTTTAATGTC
GATATTTTGGCTGAAGGTTCCTTTTAGgaactagcaaaaaactgcGTTTA
CAGAATTGTGAAATATTAATTCCTTCGCCAGATATTTAGTATCAAACTTT
GTGTATCTAAAACCTcatcttttaaaatcaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002431-exon-sc0000020-1491911889:304117..304198 | TCONS_00002431-exon-sc0000020-1491911889:304117..304198 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1510915933:304117..304198 | TCONS_00002431-exon-sc0000020-1510915933:304117..304198 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1575043694:304117..304198 | TCONS_00002431-exon-sc0000020-1575043694:304117..304198 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1491911889:305180..305302 | TCONS_00002431-exon-sc0000020-1491911889:305180..305302 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1510915933:305180..305302 | TCONS_00002431-exon-sc0000020-1510915933:305180..305302 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1575043694:305180..305302 | TCONS_00002431-exon-sc0000020-1575043694:305180..305302 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1491911889:306796..307451 | TCONS_00002431-exon-sc0000020-1491911889:306796..307451 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1510915933:306796..307451 | TCONS_00002431-exon-sc0000020-1510915933:306796..307451 | Clytia hemisphaerica | exon |
| TCONS_00002431-exon-sc0000020-1575043694:306796..307451 | TCONS_00002431-exon-sc0000020-1575043694:306796..307451 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:304117..307451 + |
Blast
The following BLAST results are available for this feature:
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