XLOC_001307 (gene) - C. hemisphaerica

Overview
NameXLOC_001307
Unique NameXLOC_001307
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000020:302134..307451+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001307 ID=XLOC_001307|Name=XLOC_001307|organism=Clytia hemisphaerica|type=gene|length=5318bp|location=Sequence derived from alignment at sc0000020:302134..307451+ (Clytia hemisphaerica)
ggggtgtatacattgaaatattattttgggCCATGTTTCCGTTGATTTTG ACTATTGAATTAGACTGTTCAAGTGTAAAacaagctttgaaaaaatcaaa tatctcaAGCACATGTTCGCTTACATACCCGGTGATTAACGAGAAATACC TTTTCCATGTGTATCACTTAAAGCAATCATCTTGAATGGAATTGGTTAAT TTTATGACATGCCTTCATAATTGTCAGATCTGGCAGTGTTTAAAGACGTG TGAGGGAGAGAGTTTATTTACATATAAGTCGTATGGATAAACTTATAGCT CTCTACAATCGCATAACTTTAACTTGCCAAAAAATCTTCCTTCTTTAATT AGCAAGTACTTGAACTTTGAAGTAGCAGGAGAAAAGCAGAATACATTGAT AAACAAGAGGAGCAGGATCACATAACAAGAAGAAAAGACAATTTCAGCCA AGAAACCAAAGAAGAGCTAAAACAACATTATAAAGCTATGAACAACCAAG GTATCTAGACGTTTTCCAtactacacccccttctcagaGAGCCGGTGGGA TTTAATCAgctagtgggggtaaaaataacggaccaaaaatCGATGGAGAT CTTGATATTCCAATAGTTtggttaccttaagggaacttattttggcggga actaattttggcgagcagcgaaaatcttacaaaattttaattttggcggg aactaattttggcaaatgacagcgtaaatctgttctatcttgccttattt tgagcaattttgatgaatttcaggggttatttaggcaaggaaacaaaaaa ttaaattttggcgggaacttattttggcgagtgagcaaaatatttaattt tggcgggaactaaatttggcgaatttcgtctaaattcgccaaattcgcca aaattagttcccgccaaaataagttcccttaaggtagttttggctgggga tttgaattccattgtcttctagccagaaaattcagtggggatgaaaaaaa tagcacaatattttgcagtggggatttgcttatatgattattttcagcgg agaCGAAAATCAGAGTATAAtcttccaccggggacgatattttggccaat ttttacagtgggaagggttcccagtgggtctatgagaagggggtgtcata CGGCCAAGAGGAATTTTTCGGCTGCCATAAATTTGATTTAGGAGCTAGCT CAAAAATCTGGTACAGTGAAACTCTAAACAGTCTTTATCTTTATCGAACC GTCACGAGGGGTACaagtttgttcgagttaaggaaatttcgggttatgga gtaaggtttgcaagacattagcgaggttaagcacgggtttattttgtgta cataacttgccaaaaCAAACCATCCNttagcgaggttaagcacgggATTA TTTTGTGTACATAACTTGCGAAAGCAAACCATGtaagtgaaatcttatgt acaggcctacggtatcgcattgaacggtctaaataaacacttgcttaacc tcgctattgttaactgaagtgacgagaaaacttgttcaagtTCAGCGAGA CATTCGCGCCGTAGAGGTTTGAGTTTAAGAGACTCTTATTAATTGAAGGA catcaattctttcaattttcacggtataaaaatagtaaaaatattttaaa atggcACATTACACTATTTACTAACATGTAATTACTTGGCTTTTGGCTTT TTGCccataatttttcgaaatttccttaatttCCATTAAACTTATTATgc gagatttaaaaaattgatgtAAATACTTGGGGTCCCCTCGTTGGGCTCTA AATTGATNAAAATTATTATgcgagatttaaaaaattgatgtGAATGTTAA TACTTGGGGTCCCCTCGTCGGGCTCAAAATTGACACTGTTACAAGAAACT GTTCAAGtgatcaaaaataatttttttacgcTCTTATGAATTTACTTAAG GctgtgtaaaatatttttgcctcgATTGTTTACAGGAAACCCAGGGTACG AGCGCCAGCACAATGAAGGCGTTAACATGACGCCAATTGCAAATCAACCA ATACCTTTACAGCAGGTTCGTAACTTATGGCTAAGTTTGAATCTTCAtga tttgtgaaaaaaatcttcaatatatatatagtattttaatatttgcgcgc gtttcatactttcacaaaacacatctttttacatctttttatctgtggtg gtgtctagataacactgcttggcctacctacacaaccctatttccatcat ataggaggatattttcacaaatggccgaaatcctgtgtaggtcgaaaact gaggaacagataatgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttgtattgtctttttgt tttgtgggtttttgtctttattgtttccattttgagtagttgaaggtttt atacttctagactatatatatatatatatatgtataAATTAGTTTTCTCA ATgtagacacatatttcatatcaggacagtgtctgtctattgttatagta tgctgatataagcaaaaaatgttttttcctctttctaatcaatcttgctc cacatccgtgtcaaacCAGTGTGAAAAATCTtgctaaataaaattgaaga ggagcaaacgatatcacttttatttaaatACAAAACCTTTAATGATTTGT AACagagaaacaaaaaaaacaaaaaaNacacatgagctgcattttagtct ccattgccatattccattttaaatctgtatatatttgaaataattctgtg tcgtgtttgaaaaatcaagccaccaatcgttaaacgagacagatccagaa ataaccattttcatgTANTCTTAGCAGAAAAGTAACTTTGATCTTTTGAC TACAATTTCTTCATATTTATAGAATCCAGTTGGATTTCCTGTTCAGATGC AATCATTGGACCATTATCCATCTAACCATAAATGCTTGGCTTGCACAGGA TTGATATGCACGGGATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGC TGTCGCATCATCGAATCACGTAAGTGGCTACCATTATTGGCCATTATCAC ACCCCTGNTGTGTCGAGTAcgttgtcgagtttgaaaatcatgccaCGTCC CACTGTCACTGTACTGACCGTTGtttaacagcgacagatccagaagcaAC ATTGtgtcttattcaaatttacacatttcagtttatttacNATGTACGTA CTGTTGTTGTCCAATAGGTATGGCTGCTGTCGCATCATCGAATCACGTAA GTGGCTACCATTATTGGCCAttatcacacccctgtctcacagccccggtg aaacctTTTTCCTCTGTGGGGATAAAGATTCtttttgaaatcccaatggg gatagaaattctattcaatgttaaacaagaagcccgttgggcgtgaaggc ccagcaaaagtgaAATGTTTGcgcgcgattttcgcgaatttcggaatttc taaaaattccaaaaaatgtttaacaagatttcaaatttccccCAGGAAAG GGATGGCCAAAGGATTTAANNNNNNNNNNNNNNNNNNNNNNNNAGCCcta aagctttatgaaaacttgagcaaaaactataagatatgacagaatgttga aaaaggtttacaaagaaaaatcactaaaaggtttctttggtttgaaaagt ctctaaagcaaagaaaatattcaagaaagtatgaatcaacacgAATCAAT TTCCTcccttcgaccgccatcttgttttgttttgaaaacgtttgttgttt aaggagcgcgaaatcagaaaatatatcttttttagccagtacccgacttt agtaagcttttccctgtccagacggcaaaaagtgtgatactggtattaag cgccgtttctaccaaaacggacagacagaaggaaacacggacaaaaaaat agtgaGACTCTCattaaaggcccactcgctagcgctgggccaaaaatcCA GTGTGGATGGTTTTGAGTGCAATatttaaattgaatttcgagtggggatg aaatcaaagtcaatttgccagtggggctgaaattccaaggCATTTTCCCA ACGGGGACAAATTTTTAGCCacatttcccagtggggctgggataccagcg ggtctgtgacatagGGGTGTATTATCTCAAGAATACACAGAGAGCCTGCA ATctcccatttttctttctagcaatgaaagtgaaatctcacttttgtccc tgtgacaaaatcttttcataggcgtagcgagataccctgcaaaatttatg gatgagagcggtttttacgacactgtaattattgtctttgtttcatcaaa agatAATGGATATGTCATAAACGTGTGCACTCCCTCACAAATTTTGCAAG GTATCTCGCTTCGTCTAtgcttttgggtatttccctcactttttgtccca tgaaacaaaaaaagggtgggatggagcatgttgcattgcaccaacgcgaa aaaaaattctcgtctccccaagcctttaatcattcatatatattttttca ctttttatccAGGTTGATATGGCAATGACAATGAGAAACTACGAAGCTGC TGATATCCATTCTCGACGAACAAAAACGTTGGCCATTGTTGCTATTGCCG TTGGAACTTTTTTACTTATTCTGTTTTTTATCCTCGCCTTTACTGCTGGT CGAAAGCACTTTTGATAGAGTTTATTATTCTCCGATTCAGTTTTGTTAAA GTAATATTTCCTTTTaacactttcaaccaatcattTTGTGCTATGCTAAA TAATTTAAGCGGGAACTAATATTGTCgcttttttcgtgatttttcggcaa aatcgcgaaaattaaattCCACAAGCTATAAATTTGACCATTTCCCATCA AAAATCccaaggaaaaaaaagaaatgtgtGCGAAAAAGGGAGAAACTGCA AAAATCGATTTCCacgaaatgtgattttttcaactttttcgactgcgaaa attagttcctgctAAAATTAGTTCACTTATATgtccttaagggctctgac catagtcaaaaattAGTATTTCAGTTTAATGTCGATATTTTGGCTGAAGG TTCCTTTTAGgaactagcaaaaaactgcGTTTACAGAATTGTGAAATATT AATTCCTTCGCCAGATATTTAGTATCAAACTTTGTGTATCTAAAACCTca tcttttaaaatcaaaact
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002429TCONS_00002429Clytia hemisphaericatranscript
TCONS_00002430TCONS_00002430Clytia hemisphaericatranscript
TCONS_00002431TCONS_00002431Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002430-proteinTCONS_00002430-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:302134..307451 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11 0.05 0.25 0.3 1.02 0.61 0.77 1.31 0.73 1.1 0.66 1.23 45.99 55.88 35.66 40.3 24.71 28.34 8.13 9.3 0.53 0.38 0.31 0.28 0.16 0.12 0.23 0.26 0.44 0.43