TCONS_00002431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002431
Unique NameTCONS_00002431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002431 ID=TCONS_00002431|Name=TCONS_00002431|organism=Clytia hemisphaerica|type=transcript|length=861bp
AGGAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGC
CAATTGCAAATCAACCAATACCTTTACAGCAGATGCAATCATTGGACCAT
TATCCATCTAACCATAAATGCTTGGCTTGCACAGGATTGATATGCACGGG
ATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGCTGTCGCATCATCGA
ATCACGTTGATATGGCAATGACAATGAGAAACTACGAAGCTGCTGATATC
CATTCTCGACGAACAAAAACGTTGGCCATTGTTGCTATTGCCGTTGGAAC
TTTTTTACTTATTCTGTTTTTTATCCTCGCCTTTACTGCTGGTCGAAAGC
ACTTTTGATAGAGTTTATTATTCTCCGATTCAGTTTTGTTAAAGTAATAT
TTCCTTTTaacactttcaaccaatcattTTGTGCTATGCTAAATAATTTA
AGCGGGAACTAATATTGTCgcttttttcgtgatttttcggcaaaatcgcg
aaaattaaattCCACAAGCTATAAATTTGACCATTTCCCATCAAAAATCc
caaggaaaaaaaagaaatgtgtGCGAAAAAGGGAGAAACTGCAAAAATCG
ATTTCCacgaaatgtgattttttcaactttttcgactgcgaaaattagtt
cctgctAAAATTAGTTCACTTATATgtccttaagggctctgaccatagtc
aaaaattAGTATTTCAGTTTAATGTCGATATTTTGGCTGAAGGTTCCTTT
TAGgaactagcaaaaaactgcGTTTACAGAATTGTGAAATATTAATTCCT
TCGCCAGATATTTAGTATCAAACTTTGTGTATCTAAAACCTcatctttta
aaatcaaaact
Run BLAST on NCBI

transcript from alignment at sc0000020:304117..307451+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002431 ID=TCONS_00002431|Name=TCONS_00002431|organism=Clytia hemisphaerica|type=transcript|length=3335bp|location=Sequence derived from alignment at sc0000020:304117..307451+ (Clytia hemisphaerica)
AGGAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGC CAATTGCAAATCAACCAATACCTTTACAGCAGGTTCGTAACTTATGGCTA AGTTTGAATCTTCAtgatttgtgaaaaaaatcttcaatatatatatagta ttttaatatttgcgcgcgtttcatactttcacaaaacacatctttttaca tctttttatctgtggtggtgtctagataacactgcttggcctacctacac aaccctatttccatcatataggaggatattttcacaaatggccgaaatcc tgtgtaggtcgaaaactgaggaacagataatgtNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat ttgtattgtctttttgttttgtgggtttttgtctttattgtttccatttt gagtagttgaaggttttatacttctagactatatatatatatatatatgt ataAATTAGTTTTCTCAATgtagacacatatttcatatcaggacagtgtc tgtctattgttatagtatgctgatataagcaaaaaatgttttttcctctt tctaatcaatcttgctccacatccgtgtcaaacCAGTGTGAAAAATCTtg ctaaataaaattgaagaggagcaaacgatatcacttttatttaaatACAA AACCTTTAATGATTTGTAACagagaaacaaaaaaaacaaaaaaNacacat gagctgcattttagtctccattgccatattccattttaaatctgtatata tttgaaataattctgtgtcgtgtttgaaaaatcaagccaccaatcgttaa acgagacagatccagaaataaccattttcatgTANTCTTAGCAGAAAAGT AACTTTGATCTTTTGACTACAATTTCTTCATATTTATAGAATCCAGTTGG ATTTCCTGTTCAGATGCAATCATTGGACCATTATCCATCTAACCATAAAT GCTTGGCTTGCACAGGATTGATATGCACGGGATGTACGTACTGTTGTTGT CCAATAGGTATGGCTGCTGTCGCATCATCGAATCACGTAAGTGGCTACCA TTATTGGCCATTATCACACCCCTGNTGTGTCGAGTAcgttgtcgagtttg aaaatcatgccaCGTCCCACTGTCACTGTACTGACCGTTGtttaacagcg acagatccagaagcaACATTGtgtcttattcaaatttacacatttcagtt tatttacNATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGCTGTCGC ATCATCGAATCACGTAAGTGGCTACCATTATTGGCCAttatcacacccct gtctcacagccccggtgaaacctTTTTCCTCTGTGGGGATAAAGATTCtt tttgaaatcccaatggggatagaaattctattcaatgttaaacaagaagc ccgttgggcgtgaaggcccagcaaaagtgaAATGTTTGcgcgcgattttc gcgaatttcggaatttctaaaaattccaaaaaatgtttaacaagatttca aatttccccCAGGAAAGGGATGGCCAAAGGATTTAANNNNNNNNNNNNNN NNNNNNNNNNAGCCctaaagctttatgaaaacttgagcaaaaactataag atatgacagaatgttgaaaaaggtttacaaagaaaaatcactaaaaggtt tctttggtttgaaaagtctctaaagcaaagaaaatattcaagaaagtatg aatcaacacgAATCAATTTCCTcccttcgaccgccatcttgttttgtttt gaaaacgtttgttgtttaaggagcgcgaaatcagaaaatatatctttttt agccagtacccgactttagtaagcttttccctgtccagacggcaaaaagt gtgatactggtattaagcgccgtttctaccaaaacggacagacagaagga aacacggacaaaaaaatagtgaGACTCTCattaaaggcccactcgctagc gctgggccaaaaatcCAGTGTGGATGGTTTTGAGTGCAATatttaaattg aatttcgagtggggatgaaatcaaagtcaatttgccagtggggctgaaat tccaaggCATTTTCCCAACGGGGACAAATTTTTAGCCacatttcccagtg gggctgggataccagcgggtctgtgacatagGGGTGTATTATCTCAAGAA TACACAGAGAGCCTGCAATctcccatttttctttctagcaatgaaagtga aatctcacttttgtccctgtgacaaaatcttttcataggcgtagcgagat accctgcaaaatttatggatgagagcggtttttacgacactgtaattatt gtctttgtttcatcaaaagatAATGGATATGTCATAAACGTGTGCACTCC CTCACAAATTTTGCAAGGTATCTCGCTTCGTCTAtgcttttgggtatttc cctcactttttgtcccatgaaacaaaaaaagggtgggatggagcatgttg cattgcaccaacgcgaaaaaaaattctcgtctccccaagcctttaatcat tcatatatattttttcactttttatccAGGTTGATATGGCAATGACAATG AGAAACTACGAAGCTGCTGATATCCATTCTCGACGAACAAAAACGTTGGC CATTGTTGCTATTGCCGTTGGAACTTTTTTACTTATTCTGTTTTTTATCC TCGCCTTTACTGCTGGTCGAAAGCACTTTTGATAGAGTTTATTATTCTCC GATTCAGTTTTGTTAAAGTAATATTTCCTTTTaacactttcaaccaatca ttTTGTGCTATGCTAAATAATTTAAGCGGGAACTAATATTGTCgcttttt tcgtgatttttcggcaaaatcgcgaaaattaaattCCACAAGCTATAAAT TTGACCATTTCCCATCAAAAATCccaaggaaaaaaaagaaatgtgtGCGA AAAAGGGAGAAACTGCAAAAATCGATTTCCacgaaatgtgattttttcaa ctttttcgactgcgaaaattagttcctgctAAAATTAGTTCACTTATATg tccttaagggctctgaccatagtcaaaaattAGTATTTCAGTTTAATGTC GATATTTTGGCTGAAGGTTCCTTTTAGgaactagcaaaaaactgcGTTTA CAGAATTGTGAAATATTAATTCCTTCGCCAGATATTTAGTATCAAACTTT GTGTATCTAAAACCTcatcttttaaaatcaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001307XLOC_001307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002431-exon-sc0000020-1491911889:304117..304198TCONS_00002431-exon-sc0000020-1491911889:304117..304198Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1510915933:304117..304198TCONS_00002431-exon-sc0000020-1510915933:304117..304198Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1575043694:304117..304198TCONS_00002431-exon-sc0000020-1575043694:304117..304198Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1491911889:305180..305302TCONS_00002431-exon-sc0000020-1491911889:305180..305302Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1510915933:305180..305302TCONS_00002431-exon-sc0000020-1510915933:305180..305302Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1575043694:305180..305302TCONS_00002431-exon-sc0000020-1575043694:305180..305302Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1491911889:306796..307451TCONS_00002431-exon-sc0000020-1491911889:306796..307451Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1510915933:306796..307451TCONS_00002431-exon-sc0000020-1510915933:306796..307451Clytia hemisphaericaexon
TCONS_00002431-exon-sc0000020-1575043694:306796..307451TCONS_00002431-exon-sc0000020-1575043694:306796..307451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:304117..307451 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108827 0.0530619 0.24644 0.301379 0 0 0.157873 0 0.0131709 0 0 0.0643858 0 0 3.07541 3.14394 4.43363 3.62872 0 1.94143 0.263253 0.192608 0.0128816 0.0820715 0 0 0 0 0 0.353873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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