TCONS_00002282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002282
Unique NameTCONS_00002282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002282 ID=TCONS_00002282|Name=TCONS_00002282|organism=Clytia hemisphaerica|type=transcript|length=3947bp
atttttcaaaaaatgttccgCGCAAGAACGGTTAAtccatttcttttttt
ccatgtcgttTCAGTTCGAATTCCTGGAGCATTTGGTCTTGAAGGTATCA
TATCATCCATTCTGGCGTTGTGTCTACTTCCCAGTTGACGAGCACCATTC
TCTGTTTTCACGAAAACCACTTGTCATCCCTCGATACCGTAAATCTGTCG
TTGTCAATCACGTGACTCCGAACTTCATTTCCGTTTCCGTACCAACCGGG
CGCTATCATGTGATTTTTCGTTATCGATTtcctggaattttgaaaataat
ggcGTTATTAGCGACCGTTATGTTTTTCAACAGCTGGTTCCGTTTGGATG
GTTTCACCAAGTTGTTTTTAGGGCTTCGACTCTTTTACAATCGAATGCAA
gcatttcagaaaattttcatttggttCTGTATCGATTTAATTGACATCTT
TTTGCCGCGATCAATAGATAAAAACATTCAACTCGTGGTCAAATGTATCA
ATTCTGGTGACGAAAAGGGTAATTTAACATACAACCCATTTAAGATTCGA
CAATTGTCAAGTCATTTGTTTTGTCAAATCCGAACGAAAATGAAATCATC
AAGCAGTCATCTTCTTGATCTGATCATTAAGAAACAAAAACCTGCACCAA
AACCATCTACAAAGTCGGCAACTCCacccaaaacaaagaaatcgtcaact
cctccaaaatcgaaatcaaATAAACATTCAAAGCACGcttcatcaaaatc
aaccaaaccatcaaaacaaacaccaCCGAAATCTTCGAAACCTACGGCac
cgaaaatgaaaaattcaccTGATAATGTTTCCAGAGATTCGTCTCCGCTG
AAACAGTACCTGGAGAACAGCGGTGTATCGGATCTCGACACATCATTTCA
GTTTGATGGTTTGGCGTACCGATCTCCACCAACGCCCCCTAAACATACAA
AGAAAAGCTACCGTAAACGACACGCCCGACTTCACGGAGACTCATCTTCC
AATAAAACTCCCTCGCCTGTCATCATACACAAGAAAATGGCTCCTATTCC
TAAAGAAGACACACTTTGTCCTATTCCTAAAGAAGAGACTCTTTGCCCAA
TGCTAGTAAATGCCATTTCTAAACAGGAAACATTATGCCCAACCCTTGAC
GGGAGAGTCACTAACAAAACACTGCCTTCAGTGTTGGACTCGCCACTTCT
TGAAGATTTGAATCTATCTCCTAAACGACCGACAACCTTATCTTTGGATC
GTTCTAGCGTAAAGAGAACTTCACCACCAGTTTCCCCAAAACCTAACCGT
GTGGTGTTCTCTAGCAATAAAGTGCTACCACCACCCGCCTCCCCACGCCA
ATCTACACCTCCAAAGAAATTGACCCCGCCCATGAAAGTGAACCCACTTG
TATCTCCGAAGCCAACTTTCAAGGTGACAACCAAAAAAACACCACCGCCT
GTCTCCCTGAAGAACACCCAAGAAACAAGTCCAAACACATCAGGGCCATC
TGGTCTACGATCATCTCCACCGCGGAAACCAGGTCTCAGATCGTCAACTC
CAGACATCAACTCCAGCTCCTTCCAGACATCTCCAGGGCGCTCTACATCC
CCAAAGGTTGGACAAATCTTGGATTCGTTACGAAATTCGGGCAGCGATGA
AGACGGATCACCGAGAATTGAAAAATACGTACCaatcaaaattggaaaat
attccaaactgTCACCAACAAAAGTACCGAATATTCGACTTGCATCTTCA
CCAAGGAAATCACCAAATGGCAATCTTCAATCTCCGGTATCGCCTTCTCC
TCGTATCGAAcccaacaacaacaataataaaTTTCTGTATTTGCCAGAGC
TAACAGGAACATCAGATCAATCACCAAGATACAACAGTGGTGGCAGTGAA
GGTATTGAATATGAATGGGACGGCATGATGGAGAGTTTCCAAGGTACCTC
ACCACTTACTGCAAGTTTCCACGAAATCGATGTTGAACGAATGGTGTCAT
CAGATGAACCTTCGTCACCATTCGACGAAGAAAGTTTCTCACCAAAGTCT
TCAAGTTCACCAGAACCGAGCAGTTCATCTGCAGACCAATATGATTCTTC
ATCACCAGATGGTCATACATCATTAGATGATGTGGAGGAGAATCAACAAG
AAGTGTATCGCATCTACATGTCTAATTCACCCAAAGAAGCTTACAAGATC
TCTCCACATTCTCCAGGaccaaataaacaaaatttgggACACTCCCCCGT
TATGCACAAACATCATTTTGAACCCTCCTCCGGAGGGGAACAAGACGATG
AAGACACGCAAGCATCGCCTCGAAGGGGGAGACCTAGCCTTAAAGGTGCT
CAATACGTTGATACTTTTAAACGACAACCTCAACACCAAGTTCGTAGAAA
ACGGCACAGCGCTAATGCTAAGTAAGGGAGGTAATGCAATCCACATTAAA
TCTTGCTAAAGATAGTTGAGCTCAACATAGCCGGAGGATACCACAGATTT
TCTGGGAATAGGCTCTTCCATAAAATTTTTGTATATGGGGGATGAGGATA
TATtagatattttgtccggggagtagtgaaaaatctgcaaaatttgcgtT
GTTTTGGGGACAAACTTGCTCTGATTcggggtgattttgaatgtccaggg
ggtcaactgatgcttgtccatgGGGTGAGATTTGTTGTCTGAGgatcaaa
attcacaatgtctgGGGgtgaatttccaaaaaatgttacatcctccaccc
ccatattcaaattctttctggaagagcccaattcgATTTCGGTTTGCATG
GTTTACGAACGAATTAGATATTTCATGCAATGTAATTTGGGAAACAATAA
TTAACTACGCAATTGAAGGAAACAAGGTGATGACATGGAGAACATTATCG
AGATTATTTGGAATGTTGTGGTGGTGATCCACTTCAAAGTATGTTCTTTG
TACCAGTGGGACTGGATTGCTATGGCTAGGGCTTGCGCGTGTACAATAGT
tcattagtttttgtttttatatcgTCTTTGTTAACATTACCCTGAAAAGG
AGGTTTTTAAATTGTTCAATATCTTATTAATATTTATTTGTTCAGAATTT
TAATGCATAAACTTTGTTcgacttttttagaaaatttaaaaactgaaagt
attatttattttattcggaattgaatctATTTGAAGTTTCAAGGGTTTTG
TGaagtaaagtctgtctcaatatgaTCTGCATCAGAATAGGCAATGACTT
TGACCGAATTTGCTTGTGCTTGCTGAAAATATCATAAAGAGTGGAGTATA
ccaattagaaaaaataaaatgaatttggaaaaatgaagaagaaaaatatc
gtCCTTGTGATGAACTGTGCATAATTTCCCATTTTCACAACAGTAATCCA
TAACTTATATAATGATCACtgtgaaaaatttattcaaaaatatgaattta
ttATCGAACGATATAGTCCAAAGTTTATCACTTTATTCTATTTTTGTTGA
ATCTTTTCTATTTTCGAAAAGCCCAAAACCTCCATTTCAttcgaatttta
tcaaaaattacagccttttttgtctctgcTGCAGATAAtatcgagacaga
ctttagtgacCAGAGTTTTTTTTCAGGCCTCGGGTTTTCCAATTTCTTAC
ACTATCTTCAAGTGAGATATTTGATGCCGACATGCGCCAGAAAATGGGCA
CTTACCTTAAACTGATTAGATATGAGTTCTTCTTACTTTTAGTGGGATAT
AATATTTTGTGAAGGATTTGCGCCTTTTAGTTAGAATTTACTGTATTTCC
AAATATGTTgttcatcaaatttttattgtatGATAGTTCATCTCAGTATT
TTCTAAATAGTCTAAAATTTCCATGTTGCAATTAAATCTGGACAGACATT
TTGTCCTGAATGGTACAGCGTTTCCTATTtagggagcggtcataaag
Run BLAST on NCBI

transcript from alignment at sc0000019:906495..911209+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002282 ID=TCONS_00002282|Name=TCONS_00002282|organism=Clytia hemisphaerica|type=transcript|length=4715bp|location=Sequence derived from alignment at sc0000019:906495..911209+ (Clytia hemisphaerica)
atttttcaaaaaatgttccgCGCAAGAACGGTTAAtccatttcttttttt
ccatgtcgttTCAGTTCGAATTCCTGGAGCATTTGGTCTTGAAGGTATCA
TATCATCCATTCTGGCGTTGTGTCTACTTCCCAGTTGACGAGCACCATTC
TCTGTTTTCACGAAAACCACTTGTCATCCCTCGATACCGTAAATCTGTCG
TTGTCAATCACGTGACTCCGAACTTCATTTCCGTTTCCGTACCAACCGGG
CGCTATCATGTGATTTTTCGTTATCGATTtcctggaattttgaaaataat
ggcGTTATTAGCGACCGTTATGTTTTTCAACAGCTGGTTCCGTTTGGATG
GTTTCACCAAGTTGTTTTTAGGGCTTCGACTCTTTTACAATCGAATGCAA
gcatttcagaaaattttcatttggttCTGTATCGATTTAATTGACATCTT
TTTGCCGCGATCAATAGATAAAAACATTCAACTCGTGGTCAAATGTATCA
ATTCTGGTGACGAAAAGGGTAATTTAACATACAACCCATTTAAGATTCGA
CAATTGTCAAGTCATTTGTTTTGTCAAATCCGAACGAAAATGAAATCATC
AAGCAGTCATCTTCTTGATCTGATCATTAAGAAACAAAAACCTGCACCAA
AACCATCTACAAAGTCGGCAACTCCacccaaaacaaagaaatcgtcaact
cctccaaaatcgaaatcaaATAAACATTCAAAGCACGcttcatcaaaatc
aaccaaaccatcaaaacaaacaccaCCGAAATCTTCGAAACCTACGGCac
cgaaaatgaaaaattcaccTGATAATGTTTCCAGAGATTCGTCTCCGCTG
AAACAGTACCTGGAGAACAGCGGTGTATCGGATCTCGACACATCATTTCA
GTTTGATGGTTTGGCGTACCGATCTCCACCAACGCCCCCTAAACATACAA
AGAAAAGCTACCGTAAACGACACGCCCGACTTCACGGAGACTCATCTTCC
AATAAAACTCCCTCGCCTGTCATCATACACAAGAAAATGGCTCCTATTCC
TAAAGAAGACACACTTTGTCCTATTCCTAAAGAAGAGACTCTTTGCCCAA
TGCTAGTAAATGCCATTTCTAAACAGGAAACATTATGCCCAACCCTTGAC
GGGAGAGTCACTAACAAAACACTGCCTTCAGTGTTGGACTCGCCACTTCT
TGAAGATTTGAATCTATCTCCTAAACGACCGACAACCTTATCTTTGGATC
GTTCTAGCGTAAAGAGAACTTCACCACCAGTTTCCCCAAAACCTAACCGT
GTGGTGTTCTCTAGCAATAAAGTGCTACCACCACCCGCCTCCCCACGCCA
ATCTACACCTCCAAAGAAATTGACCCCGCCCATGAAAGTGAACCCACTTG
TATCTCCGAAGCCAACTTTCAAGGTGACAACCAAAAAAACACCACCGCCT
GTCTCCCTGAAGAACACCCAAGAAACAAGTCCAAACACATCAGGGCCATC
TGGTCTACGATCATCTCCACCGCGGAAACCAGGTCTCAGATCGTCAACTC
CAGACATCAACTCCAGCTCCTTCCAGACATCTCCAGGGCGCTCTACATCC
CCAAAGGTTGGACAAATCTTGGATTCGTTACGAAATTCGGGCAGCGATGA
AGACGGATCACCGAGAATTGAAAAATACGTACCaatcaaaattggaaaat
attccaaactgTCACCAACAAAAGTACCGAATATTCGACTTGCATCTTCA
CCAAGGAAATCACCAAATGGCAATCTTCAATCTCCGGTATCGCCTTCTCC
TCGTATCGAAcccaacaacaacaataataaaTTTCTGTATTTGCCAGAGC
TAACAGGAACATCAGATCAATCACCAAGATACAACAGTGGTGGCAGTGAA
GGTATTGAATATGAATGGGACGGCATGATGGAGAGTTTCCAAGGTAAaac
taattttgataaaaaaagagtCAAATAGACTAACTCGCAAAATCCTTTTC
TTAAAGAGTCAAAAAGTCCTTCTCTTAAAGAAATTGCTAAATTCACCGGT
TAAGCCATAAAATTGGAGTTAATAGTACATaattagactagtaaactagt
cggttattacttataataaaactgtcaatcaaataatgtaaacactaatt
aaatattcagcgcgcgtgagagaaaaggaaaatactcgactagaagcttc
ttccaacGCCTTATtctcttcacctaaaatcgtaaggagagacatacaga
tttctctatgtctgacccgtgcgagattgtatttatttttctttctgttt
attgcatttttggaaatgctcatttatttataagttcccatgtttaatgt
tatatgaaatatcatttagtcaaaaaagttggatggattctcaaaaacct
aaaaaaggttgtaaaattaaacaacgtttttcgaggaaagaagcttctag
tcgttgaaattcagaaaagagcgTGTCTTTTTCTTTGTcctcacctcttc
gattctttttatttggagcttgaattttttgtatatgggtctgttttcaa
cgactagtttactagtctagtacATAATGTGCTTTTCGTATGCCTAAATG
GTAGCAATTTCCCTTATTCcgatcattttttaaaaatcatttctttGAAT
CCCCGAAATTTATACATCCAAATTGACTGCAATAGGCGACTAGGCTGTTT
TCTCTCTTAAGGTACCTCACCACTTACTGCAAGTTTCCACGAAATCGATG
TTGAACGAATGGTGTCATCAGATGAACCTTCGTCACCATTCGACGAAGAA
AGTTTCTCACCAAAGTCTTCAAGTTCACCAGAACCGAGCAGTTCATCTGC
AGACCAATATGATTCTTCATCACCAGATGGTCATACATCATTAGATGATG
TGGAGGAGAATCAACAAGAAGTGTATCGCATCTACATGTCTAATTCACCC
AAAGAAGCTTACAAGATCTCTCCACATTCTCCAGGaccaaataaacaaaa
tttgggACACTCCCCCGTTATGCACAAACATCATTTTGAACCCTCCTCCG
GAGGGGAACAAGACGATGAAGACACGCAAGCATCGCCTCGAAGGGGGAGA
CCTAGCCTTAAAGGTGCTCAATACGTTGATACTTTTAAACGACAACCTCA
ACACCAAGTTCGTAGAAAACGGCACAGCGCTAATGCTAAGTAAGGGAGGT
AATGCAATCCACATTAAATCTTGCTAAAGATAGTTGAGCTCAACATAGCC
GGAGGATACCACAGATTTTCTGGGAATAGGCTCTTCCATAAAATTTTTGT
ATATGGGGGATGAGGATATATtagatattttgtccggggagtagtgaaaa
atctgcaaaatttgcgtTGTTTTGGGGACAAACTTGCTCTGATTcggggt
gattttgaatgtccagggggtcaactgatgcttgtccatgGGGTGAGATT
TGTTGTCTGAGgatcaaaattcacaatgtctgGGGgtgaatttccaaaaa
atgttacatcctccacccccatattcaaattctttctggaagagcccaat
tcgATTTCGGTTTGCATGGTTTACGAACGAATTAGATATTTCATGCAATG
TAATTTGGGAAACAATAATTAACTACGCAATTGAAGGAAACAAGGTGATG
ACATGGAGAACATTATCGAGATTATTTGGAATGTTGTGGTGGTGATCCAC
TTCAAAGTATGTTCTTTGTACCAGTGGGACTGGATTGCTATGGCTAGGGC
TTGCGCGTGTACAATAGTtcattagtttttgtttttatatcgTCTTTGTT
AACATTACCCTGAAAAGGAGGTTTTTAAATTGTTCAATATCTTATTAATA
TTTATTTGTTCAGAATTTTAATGCATAAACTTTGTTcgacttttttagaa
aatttaaaaactgaaagtattatttattttattcggaattgaatctATTT
GAAGTTTCAAGGGTTTTGTGaagtaaagtctgtctcaatatgaTCTGCAT
CAGAATAGGCAATGACTTTGACCGAATTTGCTTGTGCTTGCTGAAAATAT
CATAAAGAGTGGAGTATAccaattagaaaaaataaaatgaatttggaaaa
atgaagaagaaaaatatcgtCCTTGTGATGAACTGTGCATAATTTCCCAT
TTTCACAACAGTAATCCATAACTTATATAATGATCACtgtgaaaaattta
ttcaaaaatatgaatttattATCGAACGATATAGTCCAAAGTTTATCACT
TTATTCTATTTTTGTTGAATCTTTTCTATTTTCGAAAAGCCCAAAACCTC
CATTTCAttcgaattttatcaaaaattacagccttttttgtctctgcTGC
AGATAAtatcgagacagactttagtgacCAGAGTTTTTTTTCAGGCCTCG
GGTTTTCCAATTTCTTACACTATCTTCAAGTGAGATATTTGATGCCGACA
TGCGCCAGAAAATGGGCACTTACCTTAAACTGATTAGATATGAGTTCTTC
TTACTTTTAGTGGGATATAATATTTTGTGAAGGATTTGCGCCTTTTAGTT
AGAATTTACTGTATTTCCAAATATGTTgttcatcaaatttttattgtatG
ATAGTTCATCTCAGTATTTTCTAAATAGTCTAAAATTTCCATGTTGCAAT
TAAATCTGGACAGACATTTTGTCCTGAATGGTACAGCGTTTCCTATTtag
ggagcggtcataaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001209XLOC_001209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002282-exon-sc0000019-1491911889:906495..908437TCONS_00002282-exon-sc0000019-1491911889:906495..908437Clytia hemisphaericaexon
TCONS_00002282-exon-sc0000019-1510915933:906495..908437TCONS_00002282-exon-sc0000019-1510915933:906495..908437Clytia hemisphaericaexon
TCONS_00002282-exon-sc0000019-1575043694:906495..908437TCONS_00002282-exon-sc0000019-1575043694:906495..908437Clytia hemisphaericaexon
TCONS_00002282-exon-sc0000019-1491911889:909206..911209TCONS_00002282-exon-sc0000019-1491911889:909206..911209Clytia hemisphaericaexon
TCONS_00002282-exon-sc0000019-1510915933:909206..911209TCONS_00002282-exon-sc0000019-1510915933:909206..911209Clytia hemisphaericaexon
TCONS_00002282-exon-sc0000019-1575043694:909206..911209TCONS_00002282-exon-sc0000019-1575043694:909206..911209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:906495..911209 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.413026	0.348052	0.544251	0.30702	0.705944	0.481776	0.840644	0.916467	0.469109	0.554773	0.442725	0.387806	1.37449	1.0959	1.13184	1.63847	0.553738	0.930678	0.241696	0.48566	1.16987	1.38024	0.79119	0.843325	7.53643	7.95729	0.422775	0.369669	0.316922	0.430524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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