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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002169 ID=TCONS_00002169|Name=TCONS_00002169|organism=Clytia hemisphaerica|type=transcript|length=753bpRun BLAST on NCBI protein sequence of TCONS_00002169-protein >TCONS_00002169-protein ID=TCONS_00002169-protein|Name=TCONS_00002169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp MVDEEATETLAQRHKREQKELQGKIQALKHGIPKGDKKRKKQVTIEIAQLRun BLAST on NCBI transcript from alignment at sc0000018:858192..863411- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002169 ID=TCONS_00002169|Name=TCONS_00002169|organism=Clytia hemisphaerica|type=transcript|length=5220bp|location=Sequence derived from alignment at sc0000018:858192..863411- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:858192..863411- >TCONS_00002169 ID=TCONS_00002169|Name=TCONS_00002169|organism=Clytia hemisphaerica|type=CDS|length=4683bp|location=Sequence derived from alignment at sc0000018:858192..863411- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002169 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.119e-27 Identity = 73/212 (34.43%), Postives = 123/212 (58.02%), Query Frame = 1 Query: 118 QRHKREQKELQGKIQALKHGIPKGDKKRKKQVTIEIAQLQAELDQKQQEEIDDEKSTTVNGEGNTSLSEAVEDKLTLQENGEADPPTEDRTSQNGKKTSXXXXXXXXXXXXXXXXXXXLVEGEKESANHVRNLEAAQFDKILKENQLKIREVQPDGDCLYNSVIVQKFGSSTKEALKELRQKTAGFMRTNEDDFLPFTSNTKTGDILSTGEF 753
+RH++E+KELQ KIQ +K+ +PK DKKR+KQ+T ++A+L+ E++QK +EE++ K TT + N S AV + EN PP R S+ K+ K +++E+ E + + G R++E+ + +IL QL+I+++ DG C+Y ++ Q + LR +TA +M+++ +DFLPF +N TGD+ + EF
Sbjct: 17 RRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDVAKLEKEMEQKHREELEQLKLTT---KENKIDSVAVNISNLVLEN---QPP---RISKAQKRREKKAALEKEREERIAEAEIENLTG-------ARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEF 212 The following BLAST results are available for this feature:
BLAST of TCONS_00002169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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TCONS_00002169 (transcript) - C. hemisphaerica
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Overview
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