TCONS_00002169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002169
Unique NameTCONS_00002169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002169 ID=TCONS_00002169|Name=TCONS_00002169|organism=Clytia hemisphaerica|type=transcript|length=753bp
ttttagtgaaaaataatgaatttatgaaaaacaaaaaatggatacaattt
gaacaaaatataaCAACAACCCGCATGGTTCAAAATGGTGGATGAGGAAG
CTACCGAGACATTGGCTCAACGCCATAAACGTGAACAAAAAGAATTGCAa
gGAAAGATACAAGCACTGAAGCACGGCATACCTAAAGGTGACAAGAAACG
CAAGAAGCAAGTCACAATTGAAATCGCTCAACTTCAAGCAGAACTGGatc
aaaaacaacaagaagagATCGATGACGAGAAAAGTACAACTGTGAACGGA
GAAGGTAACACATCACTAAGTGAAGCAGTAGAAGACAAACTGACCTTACA
AGAAAATGGTGAGGCAGATCCGCCGACGGAAGACCGAACATCGCAAAATG
GGAAGAAAACTTCCAAAGCTCAGAAGAGAAGAGAGAAGAAAGAACAAGAA
GAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGAAAGCGCGAA
TCATGTTCGCAATTTGGAAGCTGCACAATtcgacaaaattttgaaagaaa
atcaacTAAAGATTCGTGAGGTACAACCAGATGGAGATTGTCTGTATAAT
TCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGAAGCGTTGAAAGA
GTTACGGCAAAAGACGGCAGGTTTTATGCGAACGAATGAAGATGACTTTC
TTCCTTTCACCTCCAACACGAAAACCGGTGACATCCTTAGCACTGGTGAG
TTT
Run BLAST on NCBI

protein sequence of TCONS_00002169-protein

>TCONS_00002169-protein ID=TCONS_00002169-protein|Name=TCONS_00002169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MVDEEATETLAQRHKREQKELQGKIQALKHGIPKGDKKRKKQVTIEIAQL
QAELDQKQQEEIDDEKSTTVNGEGNTSLSEAVEDKLTLQENGEADPPTED
RTSQNGKKTSKAQKRREKKEQEERERQKRLVEGEKESANHVRNLEAAQFD
KILKENQLKIREVQPDGDCLYNSVIVQKFGSSTKEALKELRQKTAGFMRT
NEDDFLPFTSNTKTGDILSTGEF
Run BLAST on NCBI

transcript from alignment at sc0000018:858192..863411-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002169 ID=TCONS_00002169|Name=TCONS_00002169|organism=Clytia hemisphaerica|type=transcript|length=5220bp|location=Sequence derived from alignment at sc0000018:858192..863411- (Clytia hemisphaerica)
TTTTAGTGAAAAATAATGAATTTATGAAAAACAAAAAATGGATACAATTT
GAACAAAATATAACAACAACCCGCATGGTTCAAAATGGTGGATGAGGAAG
CTACCGAGACATTGGCTCAACGCCATAAACGTGAACAAAAAGAATTGCAA
GGTTTTTGATAAATTTCTTATTATGTCAATGTTTTTATTTGTGTGTAAAA
CAACTTTTGGGTTTACCATCGGCGGATTTATGGATTTCTCTAAACAAAGT
GGCTTTATGCGAATCTTTTTTCTCATTTTACATTTGGCCCTAAAATGTAC
TCACAAAGTTGTAGTGCGTGCCATATGAAACAAGCGAATTTTATGTGTGG
GGCCTTTGGCGAGGAATGCTGACTGGACTTAGTAAATATACGTCCCGTGT
CTGATCTTGGTTGACTAAGAGTAACTCTAAATGAGGTCTTTCGATATTCT
CGAGGGTTCTTCGGGTTTAAAACAAAATTATGGGTCTTTCTAACCGTCCT
ACGTCTAGACAAAACAAAACTGCTCAAACCGTGNACAAAATTATGGGTCT
TTTTAACCGTCCTACGTCTAGACAAAACAAAACTGCCCAAACCGTCTTCT
TCCTAAAAGTGACACTATAATAAAGATATTGCTAAATCTCTACAACTTTT
CCAGGAAAGATACAAGCACTGAAGCACGGCATACCTAAAGGTGACAAGAA
ACGCAAGAAGCAAGTCACAATTGAAATCGCTCAACTTCAAGCAGAACTGG
ATCAAAAACAACAAGAAGAGATCGATGACGAGGTATGTAAACAAGGAAGA
GATCAGCTCCAAATTATTTGCTCTAGCTCATTGCAAGAGCAAACACTTAT
CAGCTACCGATCTAAGCTTTATTCTAGTCATGAAAGCTTAGTAAATTTCA
GGTCGTTTAGTGGCTACAGTAATGGGTACCCCATATTTTGATGGTCTAAA
TTGGCCTTCCTCTTTGGTTTTTTAGAAAGCATCCGATTAATGTTGACAAA
ATATAAATTTATGACGGGTGGGGGACTGCTGAATTCTTTCAAGAATCCCA
ATAATTTCTTCGGGGCTACCACCTGAGAACCCCTGATATCGCTTTACTCA
TTACGCTGTATGTAAAACTATCCTTGATTTTATATTCAATGGTCTCTGGT
GAATTTGAATTACAATATTTTGCTCGCCGTTCCATAGAAAAGTACAACTG
TGAACGGAGAAGGTAACACATCACTAAGTGAAGCAGTAGAAGACAAACTG
ACCTTACAAGAAAATGGTGAGGCAGATCCGCCGACGGAAGACCGAACATC
GCAAAATGGGAAGAAAACTTCCAAAGCTCAGAAGAGAAGAGTAAGTCGTT
CGCTCGTGATGCTGTTTGGCGCTTTGATTGGAACTTTGTTTTATTTTACC
TGTTTAGTGGTTTGATTCTTTCAATCACCAGTGTTAAAAGTTTTTTCGTC
TCTGATGAAAACCTTACGTTGACCGCAGTCGCCGATATCCAAGCGCCATC
AATCGTACTGAGAATGTGGTGAAAATCGTTCGATTGGTGCTTGTCCATGG
CCTTCAGAAATGTTACCAGGATAAACCACAACCTATAGTATTGATAGGAT
TATGTATGATTTCACTCCCCATCTCTCATTAGGAGAAGAAAGAACAAGAA
GAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGAAAGCGCGAA
TCATGTTCGCAATTTGGAAGCTGCACAATTCGACAAAATTTTGAAAGAAA
ATCAACTAAAGATTCGTGAGGTTAGTAGCATGTAACTTCCCTGCAAGTCA
GATGGTAGATATCGATTTGCTAGCCAATCAAATACCGTCATTGTGTACTT
TAACGAATTCATCCAATGAAATCACCGAACGAACCAAGGGTTAAACCCAC
ATTAAGAAAAATGTCTCGAATATTTGATAAGATAACTATTCTGCAATTGT
TACTACAGGACAGTTTTATCTTTTTGTTTTTATAATACTGACAAATAACT
CAGATAACAAATAACAACCTCAGCGTTCGAAATCCAGATTCTTCCATATG
AAGAGGGCTGCTGACTTGAAAAAGGCAAATTCAAAAGTGGCTCATGTGTA
ATTGCTAGTTGAAAGTGGGTTTCCAAGCTGCAATCTATACTTCAAGATAT
TCTGTTTATGTTATAGAAATGAGGCGCTCGTCTATACTGACAAAACAGAA
TGAACAAAAGAATTTCCTAAAATTTGATCTCATGTGGTGCGTTTAAAATA
GGTTAAATAATGTCCTTTCAGTTCTTTTGTTTGATTGTTTGATTGATTTG
ACATTTCAGGTACAACCAGATGGAGATTGGTAAGTAAAATCGAATAACTG
AAATATATAAATTATATCTTGAAACTTAGTATCTCACATTTTGTATGCTA
CTATACTAAAAATGGATTTATGAAAAATTCATGTCACGCTATAGCCCAAC
GTTTGACGGCATTCCCGATCGTCACGGCTGCGCTCATTGAAACATCATTT
ACGCCCGCTTAAAACGGTAAAATGAATAACGATTCAGGTTTTTTTGGAGA
AGAAGTCGCTGCAGTGTCAGTCTTTCGCGAAATGAAAAACCCACTTTACC
GTGGAAATAATCGACGTTTTTTGTTTTGTTTTTTTGGGAACCTTTGAACA
TAAGGTACCCGTTTACCGCAAAAGTTAAGGGTAATTAGGAGATCCAATGA
CGTTTTTTCAGATTTTTGAAAAACTTTAAACTGCGATATCTCGAGTTTGA
AAGGTAGGTAGGAGGTCGTCGACCCTTCATTGGGTCGAAGACTTTAATAT
TATAACTTTGCGTTTTCAGCACCTTGACGTTTTGAGTTTTAAACCATTTT
AAGTGGTAATCTTTCGTTTTTCGGCTTATGAATCCGAGTTTTTGACCATT
TACTATCAAAAGGGCTATTCAGCTTCACCCATTTTTTTTTTTTTTTTCAT
TTAATGACAGCTATCACTAGGAGCATTGTGTGCGTTCAGCAATACTTGAC
CGGCGTTTGCAACGACGAGAACCGTCTAAATTGTATTCTAGAGATACTTG
AAAATATACCGGGTGACCCAAAGTTCGGACGGTTTTCGTTGGGTAGGGTC
TGAAATAAAAGTAATTTAAAAGATAGAGGATGCTCTAACTTAAACTTTGA
GCTATTACTTTTTAAATTTTGTTCAGTGGTTCTTCATTTATGAGCTTTTA
AAGTCAAAATTCAATTATTGGAAAGTGAAAAAACACGTCAATTATATTTC
TTTATCTTTAACATTGTGTTTTTCGAGTGTGCTGATGTTTTACAACCTCG
TTAATTAGTGTTGTAGGTAATTAAAGTTTATAAAATAATAAATTAACAAC
GAAGTAGATTTATATAAATTTACTGTAAATATTTTTATCAAAATATTTTG
CAAATAGGCAAAATTTGCTTTCTTTATGAAAATGTCGCGTCTTATGAAAG
AACAGAGAGTGTGGGTTTGCCTGGAATATGCTAGAAAGTGCATGGTGGTG
GTTCTTTTCTGAACGCATAACTTGTTAATAGATTTTGTGAAAGTAAAGAA
TCTAAAAAAAGTTTTAAAATTGAATAAAAATATCTAACATGCTCTTTTCT
AACGATTTAACGACCTTGCTTGATTGATTGATAATAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATCTTTTAAAGTACCTTGTA
GGCTCGCAAATAGAAAATTAAGAACGTAGACAATTCACTCTTTAATTTTT
CATTTCCATCTCGTTTTCTCTGATTTCAGTCTGTATAATTCGGTTATCGT
TCAAAAGTTTGGTTCATCCACCAAAGTAAGTTATTTTTGCTGTTCTCAAC
AAGTGAAATGAACTGTCTCCAACGTTTTTACCTCAATTTTAACATTGTCA
ATAATTTTGAACTTCTAAATATCGAGGGTACTGTAGTATTATTAATCACT
GTTTGATTTTTCAACAGAATCTATCAGATTTCTCTATACCAGCAGATACC
AGCACTGTGTAACCAAATTCTAACCTTTTCTTCGTCTTATTTGTGCTTTC
AAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTTTATGCGAAC
GAATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAAAACCGGTGACA
TCCTTAGCACTGGTGAGTTT

Coding sequence (CDS) from alignment at sc0000018:858192..863411-

>TCONS_00002169 ID=TCONS_00002169|Name=TCONS_00002169|organism=Clytia hemisphaerica|type=CDS|length=4683bp|location=Sequence derived from alignment at sc0000018:858192..863411- (Clytia hemisphaerica)
GAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTTTATGCGAACGAA
TGAAGATGACTTTCTTCCTTTCACCTCCAACACGAAAACCGGTGACATCC
TTAGCACTGGTGAGTTTTCTGTATAATTCGGTTATCGTTCAAAAGTTTGG
TTCATCCACCAAAGTACAACCAGATGGAGATTGGAGAAGAAAGAACAAGA
AGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGAAAGCGCGA
ATCATGTTCGCAATTTGGAAGCTGCACAATTCGACAAAATTTTGAAAGAA
AATCAACTAAAGATTCGTGAGAAAAGTACAACTGTGAACGGAGAAGGTAA
CACATCACTAAGTGAAGCAGTAGAAGACAAACTGACCTTACAAGAAAATG
GTGAGGCAGATCCGCCGACGGAAGACCGAACATCGCAAAATGGGAAGAAA
ACTTCCAAAGCTCAGAAGAGAAGAGAAAGATACAAGCACTGAAGCACGGC
ATACCTAAAGGTGACAAGAAACGCAAGAAGCAAGTCACAATTGAAATCGC
TCAACTTCAAGCAGAACTGGATCAAAAACAACAAGAAGAGATCGATGACG
AGATGGTGGATGAGGAAGCTACCGAGACATTGGCTCAACGCCATAAACGT
GAACAAAAAGAATTGCAAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGG
CAGGTTTTATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAAC
ACGAAAACCGGTGACATCCTTAGCACTGGTGAGTTTTCTGTATAATTCGG
TTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTACAACCAGATGGAGAT
TGGAGAAGAAAGAACAAGAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAA
GGTGAAAAAGAAAGCGCGAATCATGTTCGCAATTTGGAAGCTGCACAATT
CGACAAAATTTTGAAAGAAAATCAACTAAAGATTCGTGAGAAAAGTACAA
CTGTGAACGGAGAAGGTAACACATCACTAAGTGAAGCAGTAGAAGACAAA
CTGACCTTACAAGAAAATGGTGAGGCAGATCCGCCGACGGAAGACCGAAC
ATCGCAAAATGGGAAGAAAACTTCCAAAGCTCAGAAGAGAAGAGAAAGAT
ACAAGCACTGAAGCACGGCATACCTAAAGGTGACAAGAAACGCAAGAAGC
AAGTCACAATTGAAATCGCTCAACTTCAAGCAGAACTGGATCAAAAACAA
CAAGAAGAGATCGATGACGAGATGGTGGATGAGGAAGCTACCGAGACATT
GGCTCAACGCCATAAACGTGAACAAAAAGAATTGCAAGGAAGCGTTGAAA
GAGTTACGGCAAAAGACGGCAGGTTTTATGCGAACGAATGAAGATGACTT
TCTTCCTTTCACCTCCAACACGAAAACCGGTGACATCCTTAGCACTGGTG
AGTTTTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAA
AGTACAACCAGATGGAGATTGGAGAAGAAAGAACAAGAAGAGCGAGAGCG
CCAGAAGCGTTTAGTGGAAGGTGAAAAAGAAAGCGCGAATCATGTTCGCA
ATTTGGAAGCTGCACAATTCGACAAAATTTTGAAAGAAAATCAACTAAAG
ATTCGTGAGAAAAGTACAACTGTGAACGGAGAAGGTAACACATCACTAAG
TGAAGCAGTAGAAGACAAACTGACCTTACAAGAAAATGGTGAGGCAGATC
CGCCGACGGAAGACCGAACATCGCAAAATGGGAAGAAAACTTCCAAAGCT
CAGAAGAGAAGAGAAAGATACAAGCACTGAAGCACGGCATACCTAAAGGT
GACAAGAAACGCAAGAAGCAAGTCACAATTGAAATCGCTCAACTTCAAGC
AGAACTGGATCAAAAACAACAAGAAGAGATCGATGACGAGATGGTGGATG
AGGAAGCTACCGAGACATTGGCTCAACGCCATAAACGTGAACAAAAAGAA
TTGCAAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTTTATGC
GAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAAAACCGGT
GACATCCTTAGCACTGGTGAGTTTTCTGTATAATTCGGTTATCGTTCAAA
AGTTTGGTTCATCCACCAAAGTACAACCAGATGGAGATTGGAGAAGAAAG
AACAAGAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGAA
AGCGCGAATCATGTTCGCAATTTGGAAGCTGCACAATTCGACAAAATTTT
GAAAGAAAATCAACTAAAGATTCGTGAGAAAAGTACAACTGTGAACGGAG
AAGGTAACACATCACTAAGTGAAGCAGTAGAAGACAAACTGACCTTACAA
GAAAATGGTGAGGCAGATCCGCCGACGGAAGACCGAACATCGCAAAATGG
GAAGAAAACTTCCAAAGCTCAGAAGAGAAGAGAAAGATACAAGCACTGAA
GCACGGCATACCTAAAGGTGACAAGAAACGCAAGAAGCAAGTCACAATTG
AAATCGCTCAACTTCAAGCAGAACTGGATCAAAAACAACAAGAAGAGATC
GATGACGAGATGGTGGATGAGGAAGCTACCGAGACATTGGCTCAACGCCA
TAAACGTGAACAAAAAGAATTGCAAGGAAGCGTTGAAAGAGTTACGGCAA
AAGACGGCAGGTTTTATGCGAACGAATGAAGATGACTTTCTTCCTTTCAC
CTCCAACACGAAAACCGGTGACATCCTTAGCACTGGTGAGTTTTCTGTAT
AATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTACAACCAGA
TGGAGATTGGAGAAGAAAGAACAAGAAGAGCGAGAGCGCCAGAAGCGTTT
AGTGGAAGGTGAAAAAGAAAGCGCGAATCATGTTCGCAATTTGGAAGCTG
CACAATTCGACAAAATTTTGAAAGAAAATCAACTAAAGATTCGTGAGAAA
AGTACAACTGTGAACGGAGAAGGTAACACATCACTAAGTGAAGCAGTAGA
AGACAAACTGACCTTACAAGAAAATGGTGAGGCAGATCCGCCGACGGAAG
ACCGAACATCGCAAAATGGGAAGAAAACTTCCAAAGCTCAGAAGAGAAGA
GAAAGATACAAGCACTGAAGCACGGCATACCTAAAGGTGACAAGAAACGC
AAGAAGCAAGTCACAATTGAAATCGCTCAACTTCAAGCAGAACTGGATCA
AAAACAACAAGAAGAGATCGATGACGAGATGGTGGATGAGGAAGCTACCG
AGACATTGGCTCAACGCCATAAACGTGAACAAAAAGAATTGCAAGGAAGC
GTTGAAAGAGTTACGGCAAAAGACGGCAGGTTTTATGCGAACGAATGAAG
ATGACTTTCTTCCTTTCACCTCCAACACGAAAACCGGTGACATCCTTAGC
ACTGGTGAGTTTTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCAT
CCACCAAAGTACAACCAGATGGAGATTGGAGAAGAAAGAACAAGAAGAGC
GAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGAAAGCGCGAATCAT
GTTCGCAATTTGGAAGCTGCACAATTCGACAAAATTTTGAAAGAAAATCA
ACTAAAGATTCGTGAGAAAAGTACAACTGTGAACGGAGAAGGTAACACAT
CACTAAGTGAAGCAGTAGAAGACAAACTGACCTTACAAGAAAATGGTGAG
GCAGATCCGCCGACGGAAGACCGAACATCGCAAAATGGGAAGAAAACTTC
CAAAGCTCAGAAGAGAAGAGAAAGATACAAGCACTGAAGCACGGCATACC
TAAAGGTGACAAGAAACGCAAGAAGCAAGTCACAATTGAAATCGCTCAAC
TTCAAGCAGAACTGGATCAAAAACAACAAGAAGAGATCGATGACGAGATG
GTGGATGAGGAAGCTACCGAGACATTGGCTCAACGCCATAAACGTGAACA
AAAAGAATTGCAAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGT
TTTATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAA
AACCGGTGACATCCTTAGCACTGGTGAGTTTTCTGTATAATTCGGTTATC
GTTCAAAAGTTTGGTTCATCCACCAAAGTACAACCAGATGGAGATTGGAG
AAGAAAGAACAAGAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGA
AAAAGAAAGCGCGAATCATGTTCGCAATTTGGAAGCTGCACAATTCGACA
AAATTTTGAAAGAAAATCAACTAAAGATTCGTGAGAAAAGTACAACTGTG
AACGGAGAAGGTAACACATCACTAAGTGAAGCAGTAGAAGACAAACTGAC
CTTACAAGAAAATGGTGAGGCAGATCCGCCGACGGAAGACCGAACATCGC
AAAATGGGAAGAAAACTTCCAAAGCTCAGAAGAGAAGAGAAAGATACAAG
CACTGAAGCACGGCATACCTAAAGGTGACAAGAAACGCAAGAAGCAAGTC
ACAATTGAAATCGCTCAACTTCAAGCAGAACTGGATCAAAAACAACAAGA
AGAGATCGATGACGAGATGGTGGATGAGGAAGCTACCGAGACATTGGCTC
AACGCCATAAACGTGAACAAAAAGAATTGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001130XLOC_001130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002169-exon-sc0000018-1575043694:863261..863411TCONS_00002169-exon-sc0000018-1575043694:863261..863411Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1575043694:862630..862757TCONS_00002169-exon-sc0000018-1575043694:862630..862757Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1575043694:862072..862224TCONS_00002169-exon-sc0000018-1575043694:862072..862224Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1575043694:861642..861779TCONS_00002169-exon-sc0000018-1575043694:861642..861779Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1575043694:861083..861102TCONS_00002169-exon-sc0000018-1575043694:861083..861102Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1575043694:858537..858582TCONS_00002169-exon-sc0000018-1575043694:858537..858582Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1575043694:858192..858308TCONS_00002169-exon-sc0000018-1575043694:858192..858308Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1510915933:863261..863411TCONS_00002169-exon-sc0000018-1510915933:863261..863411Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1510915933:862630..862757TCONS_00002169-exon-sc0000018-1510915933:862630..862757Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1510915933:862072..862224TCONS_00002169-exon-sc0000018-1510915933:862072..862224Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1510915933:861642..861779TCONS_00002169-exon-sc0000018-1510915933:861642..861779Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1510915933:861083..861102TCONS_00002169-exon-sc0000018-1510915933:861083..861102Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1510915933:858537..858582TCONS_00002169-exon-sc0000018-1510915933:858537..858582Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1510915933:858192..858308TCONS_00002169-exon-sc0000018-1510915933:858192..858308Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1491911889:863261..863411TCONS_00002169-exon-sc0000018-1491911889:863261..863411Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1491911889:862630..862757TCONS_00002169-exon-sc0000018-1491911889:862630..862757Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1491911889:862072..862224TCONS_00002169-exon-sc0000018-1491911889:862072..862224Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1491911889:861642..861779TCONS_00002169-exon-sc0000018-1491911889:861642..861779Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1491911889:861083..861102TCONS_00002169-exon-sc0000018-1491911889:861083..861102Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1491911889:858537..858582TCONS_00002169-exon-sc0000018-1491911889:858537..858582Clytia hemisphaericaexon
TCONS_00002169-exon-sc0000018-1491911889:858192..858308TCONS_00002169-exon-sc0000018-1491911889:858192..858308Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002169-proteinTCONS_00002169-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:858192..863411 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.8855	38.0272	32.3844	23.5597	87.8269	70.4568	62.761	63.9618	50.0779	48.7541	35.6528	26.8717	21.88	20.5836	15.4182	14.7794	33.012	30.8284	11.9462	15.5476	23.3468	19.922	23.8925	24.3223	46.6863	49.8557	15.3097	10.9297	15.0107	17.4655
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
[Close]
BLAST of TCONS_00002169 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.119e-27
Identity = 73/212 (34.43%), Postives = 123/212 (58.02%), Query Frame = 1 
Query:  118 QRHKREQKELQGKIQALKHGIPKGDKKRKKQVTIEIAQLQAELDQKQQEEIDDEKSTTVNGEGNTSLSEAVEDKLTLQENGEADPPTEDRTSQNGKKTSXXXXXXXXXXXXXXXXXXXLVEGEKESANHVRNLEAAQFDKILKENQLKIREVQPDGDCLYNSVIVQKFGSSTKEALKELRQKTAGFMRTNEDDFLPFTSNTKTGDILSTGEF 753
            +RH++E+KELQ KIQ +K+ +PK DKKR+KQ+T ++A+L+ E++QK +EE++  K TT   + N   S AV     + EN    PP   R S+  K+  K     +++E+   E +   + G        R++E+ +  +IL   QL+I+++  DG C+Y ++  Q         +  LR +TA +M+++ +DFLPF +N  TGD+ +  EF
Sbjct:   17 RRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDVAKLEKEMEQKHREELEQLKLTT---KENKIDSVAVNISNLVLEN---QPP---RISKAQKRREKKAALEKEREERIAEAEIENLTG-------ARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEF 212
The following BLAST results are available for this feature:
BLAST of TCONS_00002169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B5.119e-2734.43OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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