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TCONS_00002154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002154
Unique NameTCONS_00002154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002154 ID=TCONS_00002154|Name=TCONS_00002154|organism=Clytia hemisphaerica|type=transcript|length=953bp
GTATGAGCTTCAAAATAAGATTCGTTTCACATCTTATTCTGGAACCAAAG
ACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTGAC
GAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGTCA
TCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATGGATC
CTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAACACC
AGAGCTATTCGTTTTAATATCGAAGgCGTGGATCGCAACGGCAAGTGGAG
GGATCACCCACAAACATATAACCTCATGGATGAAATGATGGAAGAAATTC
CTGGCAAAGATAATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATTCT
ATTGCAATGAGTGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGAGC
TTATTACCATCGACCCTATAAACTATCTAAAAAAGATGCCATGGGTACAG
ATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAGT
CAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAGT
GGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACGC
CATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAAg
GCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAAAG
AAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTG
ATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAACA
GGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATGTCCCCAGA
GATTGCTGACATTGAAGGTATCATTAGACAACGATATCCCATCATGCCCA
TTN
Run BLAST on NCBI

transcript from alignment at sc0000018:628009..634690-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002154 ID=TCONS_00002154|Name=TCONS_00002154|organism=Clytia hemisphaerica|type=transcript|length=6682bp|location=Sequence derived from alignment at sc0000018:628009..634690- (Clytia hemisphaerica)
GTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTA TGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGA GCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCT TCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCA AAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAA TAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAA GGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGT GTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCC AATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAAT ATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATA TTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTC TTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTA CTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTA TCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCT GCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCT TGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGG TATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTAT GAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAG CTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTT CAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAA AATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAAT AAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAG GTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTG CCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCA ATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATA TATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATAT TCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCT TACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTAC TATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATANTGAAAATATTC AGTGAAGTTTCCTTTTACCTTTTACCAAAATTCGAACGTTCGAAATGGAT TAAGCCTGATTTACACTTCAACTCAAAAACAAAAAACTAGAAAATTAATT AGCGGGAGGGGGAAGTCTATTCGGGACCTTGAGTATCCCTTTGTTTGGGA GACCCAACCTTATCTTCTCGCTGCAAATGCTGAAACCCCCCGGATTTACC AATTTTACCCCCCAATTTTAGGTTTAAAGCCCTCTGGAATTCTGAATTCT TGTTCAATTCTGCAACCCTCATGGGGGTATACGGTTTTATCTTTCAAAAG CCCTTTCGAGTGATCACCTTATTCAATTTCTACTTTTAACACAATTCTTG GTCAAATGGTATAAGAGATTATAGTTGATTCCCTCTAATTCGATCTTCAG ACAATGAATTTTCTTCCCCAATAAAGATTCGAATTACGGAGAGTACTTTA AAAGATTTTCCAGTTGAAGGGACCAATGTATTAATTAGCTCGAATTACAG AAACATTATGAATAGGAGAGAGTTGACAGTATTCTCTTAATACATCGTTA ACAACCTCGTGTCTAGCATAATGTTCTTAAAATTTACATTAACCGCCTTA ATGGATTGAGAATTTTAGAATCGTTTAATGGACATAGGGCACTTCTCTCA CTGGGCAATTTTTCTGCTAATTATTCCATGCGGGATGGACAGTCCCCCGG GTTTATAATACGAGAGCGAGCGTCCTGTGAGTAAGGATTTCTTATCAATA TACATTGATGCTTCTGAAAACCTTGTGGATATCGCAAACAAATGAAAAAA AATAACAATATTTCACAAGTTTACCCTAAGAATGCATAAGCTTCAATTCT GAACTTAGATATTTACTTATTAGCAATCTTTCCCTCATAACGTTGCCAAT AAAAACTAAAAATACAGTTGATTATTCTTAAGGATTGTTACAAAGCGCCG TTTCTTCCAAGATAACTTGACGACGGACATACATCAAAACAAACAGCGAC ATGCTATGAAAGGACCGAAAATGCTGAGCCAAAAATGTGAATCATTCTGA AATCTCTGCAGCTAAATTTCCATTCGAAATTTCTTATAGATTCGTTTCAC ATCTTATTCTGGAACCAAAGACTTATTAGAGAATCTAGCATGGTTGCCAA CTTCAATCTTTGGATTTGACGAGAACAAGAAACCTAAGCTAGCTCAATGG AACTACCGTATCTTATGTCATCCTTTGTCTAAAGACTTACCAACAAGCTA TTTGAAACCCATTATGGATCCTCATTCTCAAAAAATGAATGGCTGGAACG ACGAGAAATTCTTAAACACCAGAGCTATTCGTTTTAATATCGAAGGTATG AACAATATTATCATATATCATAATGAAAAAAATGAAAAATAGGCTAAATT TAAGTCATCCAGAGTTGCAACTCAGTAGGTACGAAACGTTAAATCAACGT CTATTTAACGTCCCTAACGTTCATAAAACGTTAAATGAACGTGAAAAAAT GTTGTGTACCGGCTTGGAAGATTATGAGCAATATAATTCAGTGGGGTTTT TAACTAACAGGGGTTCTAAAAGGGTGGTGCCTTGAACATAGCATTCCATT TTTTTATATAATAGGCGTGGATCGCAACGGCAAGTGGAGGGATCACCCAC AAACATATAACCTCATGGATGAAATGATGGAAGAAATTCCTGGCAAAGAT AATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATTCTATTGCAATGAG TGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGAGCTTATTACCATC GACCCTATAAACTATGTAAGAATTGATCTTTTTTGTTTTTAAGTTTTAGT TAGTCTGTGACCACGCAGACGGAAGCGACCCAAAGGCTCTTCTTTCGATA GCTAGCTACCCAAAGGTAGGGGAGAGCGCCACTCTTTCTCCCTGGATTGT TCCACCTTCCCTTGATCCTTCCCTTAATTGCTGAGCATCAAGCAGAGAGG CGTCAAGTACAATGTAGGGAATATTTGGTATGACCCAGCTGGGGATTGAA CCTATATCCTTGCGCAACGTAGGCGGATGCTTTACCACTGTACTACGGTC ACCTTTTTAGTTGTCTGTAAACACACCTGAAAATCTACGGAAATTTCAAA ATTAATTTCCGAACACTACATTATACACGTGAGGTACACTCTTGTGTAGA GAAGATTTTCAATAAAATTATTATCTTTGTTAAAGGGTGCATATCTGTGT GACATAGATAATAAGGCTTTGTTGTAGCAAAAACCTTTTTACTGCATCGT CCTTATTATCTGACCATTTGGAAATCCACCTCCCAAGGATATGATGTAAA ATTTCAATTTATTACGAACCAGGTTAAAAAAATCAAGATATTAAAATCTG AATAACATATTCTAAGGCTTGATGTTAGCAGAATTTTATTTGTTAGTTCG CTATAACTTTGATCCTATTTGCGCATGACTTCCTCTTTATCTAGCTTTAA CCGAATCATACGAGGCTATCTAGCACTAGAATATCTCTGGTAAATTCCCC GATCTTTTTTACAAATTTAAGCTTTAGAACACCCTGTGTCCAGCCCCACC GGAAAATTTCATTCCCGTTGGGAAAATATCCAGGAATTTCAGCACCTCTG GAAAATTGACTTTGATTTCATCCCTATTCGAAATTCATGATTAAAAATTA CACTCCAAAACCATCCCCACTACATTTTTTAACCTTGGAGCAATAGAAAT ACTATCTTTATTGGGATTTCAATAGGAATTTTTTATCCCCACTGAGGAAA AAAGTTTCACCGAGGCTGTTTAGAAAGTGGTGTTTTAGAAAAAGAAATTT CCGATGGAAAAAGGAGAGAAAGTGTGCGCGATTGAAATCACTGTATCATT AATAATAAACACACTAAAAACTAATAAACAATAAATACACCTTTTCGACC CTAAAAACGTCCCAGTCTTTTTTTACTACAGTATTGTCTATAGGTGCGAA AAAAAAAGGATTGGGACGGTTTTGGGTAGTAAAACGGACCAAAAAATGCC CGCACAGCAATTGGTGGCTACGGTCAAAAAGGTGTATTTCCATATAAATA TTCTGAATTTCATTATTCAGAACTTCCATTTATTTCATCATATGATCGAT ACCTTTTATTCCCTCGGTATAATGTAGCTAAAAAAGATGCCATGGGTACA GATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAG TCAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAG TGGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACG CCATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAA GGTAAAAATTCATTTTTATTCATCCTTTTCTGATTCTGATACCACTTACG ATAGACCTTTTCATAACTTACGTCAAGAACATCACTTGCCTCGTATTCAA ACAATTACCATGGTGATTATGTCCCTTGAGACATTAATTGATCTTTTTAT GAATAAAAAGTAGTTTTATCAAAATCCGCTGGGAGTTAATCACCATGGCA ATATTTTCAAAACGAGGCAAGTGATGTTCGTAACGTAATTTGTCTATTGT ATATATCACATCCATCAGTCAAATCAAAAAGTGGTGTATAAGTGGCTTTG GGTACGAGATTGCATTCCCCTGGGAGGGATACTGTAGGCTATGATTGTCA AAATCCGAGAAAAGATTGGGTTTTCGAGGCGAGTTTACAGTTACCTTATT ACACGAATATTACTTGGCAAGTATTCAACGGCATCAATAAATAAATAAAT TTTTGTTGCTTCTTGCCTGTGACCCATCCAAATATTCAAGCTTTAATATT CAACGGCCTTGAAATTAACACAATTTAAAATTGTTTTCTTCATTCATTCA TCACCAGGCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGG ATCAAAGAAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGC GAATCTGATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAA CTCAACAGGTACGAATAAATTCACATTTTAAGTCCAAACGTGTTGTTATT GACCAAACTCGTTCCCGGTCCCTTAGTTCGCTTTTAACTAATCTCGGTAG TGCTCACGAAAGTACCGACGCCCATCTGCCGTATGTATCACAGTCACTGT GAACATAAAATGTGATAGCGAGCCGAGGTTAATTAATCAGAGACTAAAAA GTGACAACTGGTACAAGATCTTAAACCAATACCTAACCCTATTCTAGGGG CGGTTCAAAACTAGGGGGGGGGCTGACCACCCCTTAACTTTTAATCTGGT GGGTCTTTTCGGATGAAATTTGGCACACAAGATCCTTGTCACATAAGTTA ACTTTTGACAGGAAGTTTTTTTGACGATGTGACTCATCATGCCCAAAATG AGCAAAAACCGAAAATTTCCTTTGATCTTATAACTAGCTATTGTGATTTA ACAAAGGCACTAAGAACAATAAACGAGAATGCTTTTTCAAAACAATGAAA AATTAAATTGAATCTCGTCAATATATGAAGTGAAGGTAGAGAGTCTACCA TCATGTTTCCCTAACACCCTGCCGGTTCTTGGGATTCGAACACAGCCCAT TGCGGTGTAAGTTCGTGATCGAAATGTGCTTCCAGGTAGGGTTTAGGGAA ATATTGTGATAGACTCTCTACCTTCACTTATATATCACTCTCTCTCTCTC TCTCACTCTGGCTGATAATCGAAATGAGCTTAGTAAAGCTCAAATTGTAG ATGTAGAACGATAAACTCGGTAGACATTTTATCATTAACATAATTGTTAA CTAAATTTAGAATAATTTAACTCTGGCAATGGAATCTTGTTTTTGAGAAT CTTGAGTGGAAGTTCTTTCATGAAATACAGATTTTAGCTCTTGAAGGAGC TGAAAGAAAGTGCTGTAATCGTAATGAGTATTCATTGTCCGTTTGGAAAT TCAGGGTCTTAATTATCACAATTTTTTTCAATGCATTTTGTCATAGTTAC CTCAAAAACTGTTATTTATTCTTTAAACAGGTCACACGGTGAATACACAA GCTTCTGGTGTTCGAATCATGTCCCCAGAGATTGCTGACATTGAAGGTAT CATTAGACAACGATATCCCATCATGCCCATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001122XLOC_001122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002154-exon-sc0000018-1575043694:634672..634690TCONS_00002154-exon-sc0000018-1575043694:634672..634690Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:631896..632151TCONS_00002154-exon-sc0000018-1575043694:631896..632151Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:631426..631626TCONS_00002154-exon-sc0000018-1575043694:631426..631626Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:629840..630063TCONS_00002154-exon-sc0000018-1575043694:629840..630063Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:629133..629283TCONS_00002154-exon-sc0000018-1575043694:629133..629283Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:628009..628110TCONS_00002154-exon-sc0000018-1575043694:628009..628110Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:634672..634690TCONS_00002154-exon-sc0000018-1510915933:634672..634690Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:631896..632151TCONS_00002154-exon-sc0000018-1510915933:631896..632151Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:631426..631626TCONS_00002154-exon-sc0000018-1510915933:631426..631626Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:629840..630063TCONS_00002154-exon-sc0000018-1510915933:629840..630063Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:629133..629283TCONS_00002154-exon-sc0000018-1510915933:629133..629283Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:628009..628110TCONS_00002154-exon-sc0000018-1510915933:628009..628110Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:634672..634690TCONS_00002154-exon-sc0000018-1491911889:634672..634690Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:631896..632151TCONS_00002154-exon-sc0000018-1491911889:631896..632151Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:631426..631626TCONS_00002154-exon-sc0000018-1491911889:631426..631626Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:629840..630063TCONS_00002154-exon-sc0000018-1491911889:629840..630063Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:629133..629283TCONS_00002154-exon-sc0000018-1491911889:629133..629283Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:628009..628110TCONS_00002154-exon-sc0000018-1491911889:628009..628110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:628009..634690 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.0428781 0.0511539 0 0 0 1.15537e-08 0 0 0 0 0 0 0 0 0 0 0 0.0214755 0 0 0 0 0.00669321 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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