TCONS_00002154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002154
Unique NameTCONS_00002154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002154 ID=TCONS_00002154|Name=TCONS_00002154|organism=Clytia hemisphaerica|type=transcript|length=953bp
GTATGAGCTTCAAAATAAGATTCGTTTCACATCTTATTCTGGAACCAAAG
ACTTATTAGAGAATCTAGCATGGTTGCCAACTTCAATCTTTGGATTTGAC
GAGAACAAGAAACCTAAGCTAGCTCAATGGAACTACCGTATCTTATGTCA
TCCTTTGTCTAAAGACTTACCAACAAGCTATTTGAAACCCATTATGGATC
CTCATTCTCAAAAAATGAATGGCTGGAACGACGAGAAATTCTTAAACACC
AGAGCTATTCGTTTTAATATCGAAGgCGTGGATCGCAACGGCAAGTGGAG
GGATCACCCACAAACATATAACCTCATGGATGAAATGATGGAAGAAATTC
CTGGCAAAGATAATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATTCT
ATTGCAATGAGTGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGAGC
TTATTACCATCGACCCTATAAACTATCTAAAAAAGATGCCATGGGTACAG
ATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAGT
CAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAGT
GGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACGC
CATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAAg
GCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGGATCAAAG
AAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGCGAATCTG
ATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAACTCAACA
GGTCACACGGTGAATACACAAGCTTCTGGTGTTCGAATCATGTCCCCAGA
GATTGCTGACATTGAAGGTATCATTAGACAACGATATCCCATCATGCCCA
TTN
Run BLAST on NCBI

transcript from alignment at sc0000018:628009..634690-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002154 ID=TCONS_00002154|Name=TCONS_00002154|organism=Clytia hemisphaerica|type=transcript|length=6682bp|location=Sequence derived from alignment at sc0000018:628009..634690- (Clytia hemisphaerica)
GTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTA
TGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGA
GCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCT
TCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCA
AAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAA
TAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAA
GGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGT
GTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCC
AATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAAT
ATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATA
TTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTC
TTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTA
CTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTA
TCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCT
GCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCT
TGGTATGAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGG
TATGAGCTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTAT
GAGCTTCAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAG
CTTCAAAATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTT
CAAAATAAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAA
AATAAGGTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAAT
AAGGTGCCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAG
GTGTCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTG
CCAATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCA
ATATATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATA
TATTCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATAT
TCTTACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATATATTCT
TACTATCTGCTTGGTATGAGCTTCAAAATAAGGTGTCAATATATTCTTAC
TATCTGCTTGGTATGAGCTTCAAAATAAGGTGCCAATANTGAAAATATTC
AGTGAAGTTTCCTTTTACCTTTTACCAAAATTCGAACGTTCGAAATGGAT
TAAGCCTGATTTACACTTCAACTCAAAAACAAAAAACTAGAAAATTAATT
AGCGGGAGGGGGAAGTCTATTCGGGACCTTGAGTATCCCTTTGTTTGGGA
GACCCAACCTTATCTTCTCGCTGCAAATGCTGAAACCCCCCGGATTTACC
AATTTTACCCCCCAATTTTAGGTTTAAAGCCCTCTGGAATTCTGAATTCT
TGTTCAATTCTGCAACCCTCATGGGGGTATACGGTTTTATCTTTCAAAAG
CCCTTTCGAGTGATCACCTTATTCAATTTCTACTTTTAACACAATTCTTG
GTCAAATGGTATAAGAGATTATAGTTGATTCCCTCTAATTCGATCTTCAG
ACAATGAATTTTCTTCCCCAATAAAGATTCGAATTACGGAGAGTACTTTA
AAAGATTTTCCAGTTGAAGGGACCAATGTATTAATTAGCTCGAATTACAG
AAACATTATGAATAGGAGAGAGTTGACAGTATTCTCTTAATACATCGTTA
ACAACCTCGTGTCTAGCATAATGTTCTTAAAATTTACATTAACCGCCTTA
ATGGATTGAGAATTTTAGAATCGTTTAATGGACATAGGGCACTTCTCTCA
CTGGGCAATTTTTCTGCTAATTATTCCATGCGGGATGGACAGTCCCCCGG
GTTTATAATACGAGAGCGAGCGTCCTGTGAGTAAGGATTTCTTATCAATA
TACATTGATGCTTCTGAAAACCTTGTGGATATCGCAAACAAATGAAAAAA
AATAACAATATTTCACAAGTTTACCCTAAGAATGCATAAGCTTCAATTCT
GAACTTAGATATTTACTTATTAGCAATCTTTCCCTCATAACGTTGCCAAT
AAAAACTAAAAATACAGTTGATTATTCTTAAGGATTGTTACAAAGCGCCG
TTTCTTCCAAGATAACTTGACGACGGACATACATCAAAACAAACAGCGAC
ATGCTATGAAAGGACCGAAAATGCTGAGCCAAAAATGTGAATCATTCTGA
AATCTCTGCAGCTAAATTTCCATTCGAAATTTCTTATAGATTCGTTTCAC
ATCTTATTCTGGAACCAAAGACTTATTAGAGAATCTAGCATGGTTGCCAA
CTTCAATCTTTGGATTTGACGAGAACAAGAAACCTAAGCTAGCTCAATGG
AACTACCGTATCTTATGTCATCCTTTGTCTAAAGACTTACCAACAAGCTA
TTTGAAACCCATTATGGATCCTCATTCTCAAAAAATGAATGGCTGGAACG
ACGAGAAATTCTTAAACACCAGAGCTATTCGTTTTAATATCGAAGGTATG
AACAATATTATCATATATCATAATGAAAAAAATGAAAAATAGGCTAAATT
TAAGTCATCCAGAGTTGCAACTCAGTAGGTACGAAACGTTAAATCAACGT
CTATTTAACGTCCCTAACGTTCATAAAACGTTAAATGAACGTGAAAAAAT
GTTGTGTACCGGCTTGGAAGATTATGAGCAATATAATTCAGTGGGGTTTT
TAACTAACAGGGGTTCTAAAAGGGTGGTGCCTTGAACATAGCATTCCATT
TTTTTATATAATAGGCGTGGATCGCAACGGCAAGTGGAGGGATCACCCAC
AAACATATAACCTCATGGATGAAATGATGGAAGAAATTCCTGGCAAAGAT
AATTATGGTGGGAATGTATCAGCAAGTTCTTTTGATTCTATTGCAATGAG
TGCAAACCCTTCCAAAAGTGGACAACCATTAAACGGAGCTTATTACCATC
GACCCTATAAACTATGTAAGAATTGATCTTTTTTGTTTTTAAGTTTTAGT
TAGTCTGTGACCACGCAGACGGAAGCGACCCAAAGGCTCTTCTTTCGATA
GCTAGCTACCCAAAGGTAGGGGAGAGCGCCACTCTTTCTCCCTGGATTGT
TCCACCTTCCCTTGATCCTTCCCTTAATTGCTGAGCATCAAGCAGAGAGG
CGTCAAGTACAATGTAGGGAATATTTGGTATGACCCAGCTGGGGATTGAA
CCTATATCCTTGCGCAACGTAGGCGGATGCTTTACCACTGTACTACGGTC
ACCTTTTTAGTTGTCTGTAAACACACCTGAAAATCTACGGAAATTTCAAA
ATTAATTTCCGAACACTACATTATACACGTGAGGTACACTCTTGTGTAGA
GAAGATTTTCAATAAAATTATTATCTTTGTTAAAGGGTGCATATCTGTGT
GACATAGATAATAAGGCTTTGTTGTAGCAAAAACCTTTTTACTGCATCGT
CCTTATTATCTGACCATTTGGAAATCCACCTCCCAAGGATATGATGTAAA
ATTTCAATTTATTACGAACCAGGTTAAAAAAATCAAGATATTAAAATCTG
AATAACATATTCTAAGGCTTGATGTTAGCAGAATTTTATTTGTTAGTTCG
CTATAACTTTGATCCTATTTGCGCATGACTTCCTCTTTATCTAGCTTTAA
CCGAATCATACGAGGCTATCTAGCACTAGAATATCTCTGGTAAATTCCCC
GATCTTTTTTACAAATTTAAGCTTTAGAACACCCTGTGTCCAGCCCCACC
GGAAAATTTCATTCCCGTTGGGAAAATATCCAGGAATTTCAGCACCTCTG
GAAAATTGACTTTGATTTCATCCCTATTCGAAATTCATGATTAAAAATTA
CACTCCAAAACCATCCCCACTACATTTTTTAACCTTGGAGCAATAGAAAT
ACTATCTTTATTGGGATTTCAATAGGAATTTTTTATCCCCACTGAGGAAA
AAAGTTTCACCGAGGCTGTTTAGAAAGTGGTGTTTTAGAAAAAGAAATTT
CCGATGGAAAAAGGAGAGAAAGTGTGCGCGATTGAAATCACTGTATCATT
AATAATAAACACACTAAAAACTAATAAACAATAAATACACCTTTTCGACC
CTAAAAACGTCCCAGTCTTTTTTTACTACAGTATTGTCTATAGGTGCGAA
AAAAAAAGGATTGGGACGGTTTTGGGTAGTAAAACGGACCAAAAAATGCC
CGCACAGCAATTGGTGGCTACGGTCAAAAAGGTGTATTTCCATATAAATA
TTCTGAATTTCATTATTCAGAACTTCCATTTATTTCATCATATGATCGAT
ACCTTTTATTCCCTCGGTATAATGTAGCTAAAAAAGATGCCATGGGTACA
GATTCAACGCAGCGTGGTTATTCAGATCGTTTGTACATGGCCATGAACAG
TCAAGAGAGAATCGCTGGTCAAACTTACACAGATAAAGATGGAAACGAAG
TGGAGACCAAAGTCAGTTACGCTATCCCCATGGAGATCATTTACTTGACG
CCATTAGCTAAATGGAATCCTTATGATATCCAATACTCAGAGGACCCAAA
GGTAAAAATTCATTTTTATTCATCCTTTTCTGATTCTGATACCACTTACG
ATAGACCTTTTCATAACTTACGTCAAGAACATCACTTGCCTCGTATTCAA
ACAATTACCATGGTGATTATGTCCCTTGAGACATTAATTGATCTTTTTAT
GAATAAAAAGTAGTTTTATCAAAATCCGCTGGGAGTTAATCACCATGGCA
ATATTTTCAAAACGAGGCAAGTGATGTTCGTAACGTAATTTGTCTATTGT
ATATATCACATCCATCAGTCAAATCAAAAAGTGGTGTATAAGTGGCTTTG
GGTACGAGATTGCATTCCCCTGGGAGGGATACTGTAGGCTATGATTGTCA
AAATCCGAGAAAAGATTGGGTTTTCGAGGCGAGTTTACAGTTACCTTATT
ACACGAATATTACTTGGCAAGTATTCAACGGCATCAATAAATAAATAAAT
TTTTGTTGCTTCTTGCCTGTGACCCATCCAAATATTCAAGCTTTAATATT
CAACGGCCTTGAAATTAACACAATTTAAAATTGTTTTCTTCATTCATTCA
TCACCAGGCCACCGGGTCAGGCAGCAAAGGCAATCCATACAGTCACTCGG
ATCAAAGAAACTTTTTCCACACTCCTGCATCCTTCTTCACTGGTGTTGGC
GAATCTGATGCTGCTGATACTTCTAAAACTGGTGGTGTATGGATCAAGAA
CTCAACAGGTACGAATAAATTCACATTTTAAGTCCAAACGTGTTGTTATT
GACCAAACTCGTTCCCGGTCCCTTAGTTCGCTTTTAACTAATCTCGGTAG
TGCTCACGAAAGTACCGACGCCCATCTGCCGTATGTATCACAGTCACTGT
GAACATAAAATGTGATAGCGAGCCGAGGTTAATTAATCAGAGACTAAAAA
GTGACAACTGGTACAAGATCTTAAACCAATACCTAACCCTATTCTAGGGG
CGGTTCAAAACTAGGGGGGGGGCTGACCACCCCTTAACTTTTAATCTGGT
GGGTCTTTTCGGATGAAATTTGGCACACAAGATCCTTGTCACATAAGTTA
ACTTTTGACAGGAAGTTTTTTTGACGATGTGACTCATCATGCCCAAAATG
AGCAAAAACCGAAAATTTCCTTTGATCTTATAACTAGCTATTGTGATTTA
ACAAAGGCACTAAGAACAATAAACGAGAATGCTTTTTCAAAACAATGAAA
AATTAAATTGAATCTCGTCAATATATGAAGTGAAGGTAGAGAGTCTACCA
TCATGTTTCCCTAACACCCTGCCGGTTCTTGGGATTCGAACACAGCCCAT
TGCGGTGTAAGTTCGTGATCGAAATGTGCTTCCAGGTAGGGTTTAGGGAA
ATATTGTGATAGACTCTCTACCTTCACTTATATATCACTCTCTCTCTCTC
TCTCACTCTGGCTGATAATCGAAATGAGCTTAGTAAAGCTCAAATTGTAG
ATGTAGAACGATAAACTCGGTAGACATTTTATCATTAACATAATTGTTAA
CTAAATTTAGAATAATTTAACTCTGGCAATGGAATCTTGTTTTTGAGAAT
CTTGAGTGGAAGTTCTTTCATGAAATACAGATTTTAGCTCTTGAAGGAGC
TGAAAGAAAGTGCTGTAATCGTAATGAGTATTCATTGTCCGTTTGGAAAT
TCAGGGTCTTAATTATCACAATTTTTTTCAATGCATTTTGTCATAGTTAC
CTCAAAAACTGTTATTTATTCTTTAAACAGGTCACACGGTGAATACACAA
GCTTCTGGTGTTCGAATCATGTCCCCAGAGATTGCTGACATTGAAGGTAT
CATTAGACAACGATATCCCATCATGCCCATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001122XLOC_001122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002154-exon-sc0000018-1575043694:634672..634690TCONS_00002154-exon-sc0000018-1575043694:634672..634690Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:631896..632151TCONS_00002154-exon-sc0000018-1575043694:631896..632151Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:631426..631626TCONS_00002154-exon-sc0000018-1575043694:631426..631626Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:629840..630063TCONS_00002154-exon-sc0000018-1575043694:629840..630063Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:629133..629283TCONS_00002154-exon-sc0000018-1575043694:629133..629283Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1575043694:628009..628110TCONS_00002154-exon-sc0000018-1575043694:628009..628110Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:634672..634690TCONS_00002154-exon-sc0000018-1510915933:634672..634690Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:631896..632151TCONS_00002154-exon-sc0000018-1510915933:631896..632151Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:631426..631626TCONS_00002154-exon-sc0000018-1510915933:631426..631626Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:629840..630063TCONS_00002154-exon-sc0000018-1510915933:629840..630063Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:629133..629283TCONS_00002154-exon-sc0000018-1510915933:629133..629283Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1510915933:628009..628110TCONS_00002154-exon-sc0000018-1510915933:628009..628110Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:634672..634690TCONS_00002154-exon-sc0000018-1491911889:634672..634690Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:631896..632151TCONS_00002154-exon-sc0000018-1491911889:631896..632151Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:631426..631626TCONS_00002154-exon-sc0000018-1491911889:631426..631626Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:629840..630063TCONS_00002154-exon-sc0000018-1491911889:629840..630063Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:629133..629283TCONS_00002154-exon-sc0000018-1491911889:629133..629283Clytia hemisphaericaexon
TCONS_00002154-exon-sc0000018-1491911889:628009..628110TCONS_00002154-exon-sc0000018-1491911889:628009..628110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:628009..634690 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0428781	0.0511539	0	0	0	1.15537e-08	0	0	0	0	0	0	0	0	0	0	0	0.0214755	0	0	0	0	0.00669321	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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