TCONS_00002145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002145
Unique NameTCONS_00002145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002145 ID=TCONS_00002145|Name=TCONS_00002145|organism=Clytia hemisphaerica|type=transcript|length=3128bp
ctctgtaccagagtgtatctcaagTTTATGGTTTAGTAAAAAAATTCCGT
ACGGAAACCTCTgtgatgaagtatgatttacaAATAGTAACACTTCTCTT
GTCGTCTCCCCTGTCTCACCCGCACTCTATCGCGGCGGtctgtttgaaaa
atctcaaatcagaacagacaatgacaacagaccctctacggcaatgaatt
ttgaaatttagccgtagatatcgggtctgtgtacagattAAGGCCACCGA
GACAAGATAAAGTTGTGAGCTCGATCACGCATTCAAGTAGAAATCATCCC
ACATGTATGTCGGATCGATTTCACAATCTGGTCCAGAATGTCGATCGATT
GGTTGCTGTTGGAGCCCTCTTGAAAATGACTCAACCGAACCATGGTGCTT
TTATAAAAACGTTACTAAACCATCAATCAGCTCCAGCATCGCAGTATCTC
AATCAACATCAATATCATCGTTAGCAGTGAAAACGTCATCAATTGAGCCT
TCTTTCTCAGTATTGGCAACTTCATCGATGCTACCATCCTTCACACCATC
ATCTCAAATAGATGAAACCTCTCTCTTGGCAACTTCATACAATACAATAT
CATCAGATATGTTCTCTACATCAATCTCTTTTATTGGATCGTCAACATCA
TCACTAATGGTTCTAGAAACTTCATTGTCATCAGCTGTGGAAACTTCAAT
GGCATCATCTCCAATAGATCTGGAAACTTCGTCATCACTTATCTTTGAAT
CTTCATCAGTATCTTTACCAATAACTTCATCCCCAATTTTACCAACAACA
CAACAATTCAGTTCTTCAATCAATATGGAATCAACATCGCCTACTCCCTC
AACAACCCTTTTCTTAGAATCAAGTTTTTCTTCATCAATGAACAGTAAGG
CGATGTCAACTATCATACAGAGTATCTCAATGACATCAATATCATCAAGC
TTTATGGAATCTTCAAACACTTCTTCGAATAAAACCTCTGCATCAACAAC
CAATAATCTTTCCATCATTTCAAGCAATGTCACCGGAGAAAAACCAACCA
TTTCATCAACAATGTTTCTACCTTTGAAACCAGAATCAATCCAACCATCA
AATGCGGCAACCTTACCAGCAAGTAGTACAATAGTAATAGTTTTGCCAGG
CAAACCAGTTCAAGTGACCAGGGCTGATGACAAATGGAAATGGATTTTGA
TCATTGTTGGTTCATCTGCTATATTCCTGATATTTCTACtgtgttgttgt
ttttgctGCCAAAGAAGAAGATTACGCAGGAAATTAGAGCAACACGAGGC
ACAAATAGAAGAGCTTCGTGAGATGTCTAGAAACAATAACAGTAGTTTAC
GAGGGCGAACATATTCCAACGTTTCTCTTGACAAAGAAGAGGCTATTCAA
CGTCATGAAAAGAACAAAGACTTATTAGCTCAGGACGGTAGTGAATTTAT
TGGTTTTACCAATGAAATGTTTCAACCAGACACATCTCGAACTGAGGTTC
GTAGGCCTTCTTTAGGACCTTCGAGATTACAGCCACCGCAGAAAAGATCA
AATCGTATCCCTTCGTTAAGCGATGCAGCCTTATTCCCTCACCCGCCTTT
TGATTTTATGAACCCTCTACATGAAGACGAACATAAAGGGAAACCTCGAT
CATCTTCTCCAGCCAATGCGGTACAAAAGAATGGAAATCCACAAGATGCA
GGTCCCCCATCGCCCCCGCCAccaccaccacctccaccaccagcTCAACC
ACAAACACCGGTCAAAATTCGTTCCAGCACTCTCAACTCGTTAGATCGAT
TTCAACAGCAACAAAATACATCGCCTATGGATTCACTGCTCGgtgaattc
aaaaagaaaatatcagttaCTGAGGCTCCAAGCAATGACCAAATAAGACC
TGTCAGAGCTTCTACGTTCTCAAAGAACGCTCATAAAGACACACCAAGTA
AACCTCGAAGAACAGCGACTGATGTGAATAAATTACCGACTGCTAAAAAA
CCGAATAGAATGCCAGCTAAGAAAGCAATGAATGGACATGTTAATGGTGA
TACAAATGAGAATGAATTTGAAGGATTTTATAATAGAACTTTTAACCCTG
AGATGAACGAATCTGCAAGTCGATTCTAGAGAAAGAGCAACTGTTGGAAA
AAGACTTTGGGTAGTCTTTGTAAGCCGTGCTTAAAAGCAAAATTTGTTTC
CATTTCTCATATTACGAAGGAACAATGGATATTTGAGAAAGATTAAGTCC
TGGGGGGGCACTACTGACTTTGACGGCCGACGtagacgtgccgctggagt
ctGAAAAGTGTACCCTGTCAGACATGAATTTTTGGTGAATTTGGAATTTG
GATTTTCACCCTAAAAAGATGTTTATTTCGTGAGTGTCTTTGAAGTGAAA
ATCTTCAATCTGGCTTATCTGTAGGACAGAACATtaatacacatcttgaa
aattagtaaatttgggactaTGTCGgatcagatatcttcagagcctaaaa
agggGGGAACCAACCAGCTAACCAGCGGCACATCCCTGTATCCAATTTTA
CCTAAGAGCCCCCCGACATCAAAGTTTAACTGACGAGCCTCAAAGACACT
CATggaattaaaacaaaagaagaaaatgttgatctgATTGAAAGTTTCAT
GTTCAAACCATGGGAACAAGGTCATGTAAATTACTTTTGGATAAAGCTTT
TTTTCAAGATTCGTGTATATAAATTTTAACGTTTAAATGTGAAATTCTAG
TCTCGTATTTGTATAAAGtgaaaaatcaaacaattttacAGACTACTTTG
TACATATTGTAGATGGTAGAAAATTGTGAGAAATTCAACAGTCGATAATG
ATAGATGAATATGTTGAGTGCGTGGAAACTGTTTTAATGATCTTTAAGGG
GTCTTTAGGCCTGGTTTAGCCAATCGGCAATTGACAAGCATTGAATGAAC
TGAACATAAATAAAGGATTCATTTCTTCATTCAGAAATGGAAATTCCCGG
ATTCAATGCGCTCCTGTTAAGCTAGCCTAatcggggctttgaaatcaata
gGATAGACActagtcttttttttttgctctttttctcaAATTGCAATTAT
TTGTCATTCTGTcgaacttcaaattttt
Run BLAST on NCBI

transcript from alignment at sc0000018:561257..565223-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002145 ID=TCONS_00002145|Name=TCONS_00002145|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at sc0000018:561257..565223- (Clytia hemisphaerica)
CTCTGTACCAGAGTGTATCTCAAGTTTATGGTTTAGTAAAAAAATTCCGT
ACGGAAACCTCTGTGATGAAGTATGATTTACAAATAGTAACACTTCTCTT
GTCGTCTCCCCTGTCTCACCCGCACTCTATCGCGGCGGTCTGTTTGAAAA
ATCTCAAATCAGAACAGACAATGACAACAGACCCTCTACGGCAATGAATT
TTGAAATTTAGCCGTAGATATCGGGTCTGTGTACAGATTAAGGCCACCGA
GACAAGATAAAGTTGTGAGCTCGATCACGCATTCAAGTAGAAATCATCCC
ACATGTATGTCGGATCGATTTCACAATCTGGTCCAGAATGTCGATCGATT
GGTTGCTGTTGGAGCCCTCTTGAAAATGACTCAACCGAACCATGGTGCTT
TTATAGTAGGTGCAATGATTGGTTGGATAACACTACCCCGTTTCTTAAAC
TTATTGGTGATTATACCATCCTTACTCTATCTCACCAACAGTTTGCCAAG
GTTTGCATAGCAATCGTACCAACTATTTTCCCTTGAAAATTTGGTCTAAG
GAAAGCCTACTGAAGTTATATTGAGCCTAGCCTAAAGAATGATACTTAAA
AGATCGTTCAAAACTTTAACTTTGTTGAGTCTTCTCTTGATCATTGGAGA
TTCAGAAGAAAATCGCCCACAAAAACTAGAAAAAAGTGTTAATTTATAAA
AAAGTGCCTTTTACATATTAACCGAATCAAAAATCTCAAATAACAGGCAG
AATTGTGTGTAACCTTATATCTTTCACATTTGACTGATTGTCTTATACAA
TATCCTAACATATTAAGATCCTCATTCATTAGAAACCACTTTATTTTTTG
TACTTTTTGTATAATAGAAAACGTTACTAAACCATCAATCAGCTCCAGCA
TCGCAGTATCTCAATCAACATCAATATCATCGTTAGCAGTGAAAACGTCA
TCAATTGAGCCTTCTTTCTCAGTATTGGCAACTTCATCGATGCTACCATC
CTTCACACCATCATCTCAAATAGATGAAACCTCTCTCTTGGCAACTTCAT
ACAATACAATATCATCAGATATGTTCTCTACATCAATCTCTTTTATTGGA
TCGTCAACATCATCACTAATGGTTCTAGAAACTTCATTGTCATCAGCTGT
GGAAACTTCAATGGCATCATCTCCAATAGATCTGGAAACTTCGTCATCAC
TTATCTTTGAATCTTCATCAGTATCTTTACCAATAACTTCATCCCCAATT
TTACCAACAACACAACAATTCAGTTCTTCAATCAATATGGAATCAACATC
GCCTACTCCCTCAACAACCCTTTTCTTAGAATCAAGTTTTTCTTCATCAA
TGAACAGTAAGGCGATGTCAACTATCATACAGAGTATCTCAATGACATCA
ATATCATCAAGCTTTATGGAATCTTCAAACACTTCTTCGAATAAAACCTC
TGCATCAACAACCAATAATCTTTCCATCATTTCAAGCAATGTCACCGGAG
AAAAACCAACCATTTCATCAACAATGTTTCTACCTTTGAAACCAGAATCA
ATCCAACCATCAAATGCGGCAACCTTACCAGCAAGTAGTACAATAGTAAT
AGTTTTGCCAGGCAAACCAGTTCAAGTGACCAGGGCTGATGACAAATGGA
AATGGATTTTGATCATTGTTGGTTCATCTGCTATATTCCTGATATTTCTA
CTGTGTTGTTGTTTTTGCTGCCAAAGAAGAAGGTCAGTTCTACATTGTGC
ACACCTCTATATCAGAAACCATGGCCTCACACCCCCTTAAAAACTCGATC
AATTTCCTTTGAACAAAATACCTCCGCATTTTTACTTTATTGGAATACTA
TCATGTGCTTTTACCCTGAAAATCGTCGAGAAAATTGTCATACCTACCCA
ATGAAAGCATAGGGAATGCTATCCCCATTAGAATTGTACTTTTTCGCTTT
TTCCCATTCTTCTAAAAGGATTCTGAGCGTGTCACTTAGATAAGAGTGGT
TTTACAATTTTTCGAAAGGAATAGAAGAGGAAACCCAAGTACTTTATTTT
CTGACTAGTACACATACCACAGCCTCATATTAAACGATATCCCTTTCTTC
TTACTTTAGATTACGCAGGAAATTAGAGCAACACGAGGCACAAATAGAAG
AGCTTCGTGAGATGTCTAGAAACAATAACAGTAGTTTACGAGGGCGAACA
TATTCCAACGTTTCTCTTGACAAAGAAGAGGCTATTCAACGTCATGAAAA
GAACAAAGACTTATTAGCTCAGGACGGTAGTGAATTTATTGGTTTTACCA
ATGAAATGTTTCAACCAGACACATCTCGAACTGAGGTTCGTAGGCCTTCT
TTAGGACCTTCGAGATTACAGCCACCGCAGAAAAGATCAAATCGTATCCC
TTCGTTAAGCGATGCAGCCTTATTCCCTCACCCGCCTTTTGATTTTATGA
ACCCTCTACATGAAGACGAACATAAAGGGAAACCTCGATCATCTTCTCCA
GCCAATGCGGTACAAAAGAATGGAAATCCACAAGATGCAGGTCCCCCATC
GCCCCCGCCACCACCACCACCTCCACCACCAGCTCAACCACAAACACCGG
TCAAAATTCGTTCCAGCACTCTCAACTCGTTAGATCGATTTCAACAGCAA
CAAAATACATCGCCTATGGATTCACTGCTCGGTGAATTCAAAAAGAAAAT
ATCAGTTACTGAGGCTCCAAGCAATGACCAAATAAGACCTGTCAGAGCTT
CTACGTTCTCAAAGAACGCTCATAAAGACACACCAAGTAAACCTCGAAGA
ACAGCGACTGATGTGAATAAATTACCGACTGCTAAAAAACCGAATAGAAT
GCCAGCTAAGAAAGCAATGAATGGACATGTTAATGGTGATACAAATGAGA
ATGAATTTGAAGGATTTTATAATAGAACTTTTAACCCTGAGATGAACGAA
TCTGCAAGTCGATTCTAGAGAAAGAGCAACTGTTGGAAAAAGACTTTGGG
TAGTCTTTGTAAGCCGTGCTTAAAAGCAAAATTTGTTTCCATTTCTCATA
TTACGAAGGAACAATGGATATTTGAGAAAGATTAAGTCCTGGGGGGGCAC
TACTGACTTTGACGGCCGACGTAGACGTGCCGCTGGAGTCTGAAAAGTGT
ACCCTGTCAGACATGAATTTTTGGTGAATTTGGAATTTGGATTTTCACCC
TAAAAAGATGTTTATTTCGTGAGTGTCTTTGAAGTGAAAATCTTCAATCT
GGCTTATCTGTAGGACAGAACATTAATACACATCTTGAAAATTAGTAAAT
TTGGGACTATGTCGGATCAGATATCTTCAGAGCCTAAAAAGGGGGGAACC
AACCAGCTAACCAGCGGCACATCCCTGTATCCAATTTTACCTAAGAGCCC
CCCGACATCAAAGTTTAACTGACGAGCCTCAAAGACACTCATGGAATTAA
AACAAAAGAAGAAAATGTTGATCTGATTGAAAGTTTCATGTTCAAACCAT
GGGAACAAGGTCATGTAAATTACTTTTGGATAAAGCTTTTTTTCAAGATT
CGTGTATATAAATTTTAACGTTTAAATGTGAAATTCTAGTCTCGTATTTG
TATAAAGTGAAAAATCAAACAATTTTACAGACTACTTTGTACATATTGTA
GATGGTAGAAAATTGTGAGAAATTCAACAGTCGATAATGATAGATGAATA
TGTTGAGTGCGTGGAAACTGTTTTAATGATCTTTAAGGGGTCTTTAGGCC
TGGTTTAGCCAATCGGCAATTGACAAGCATTGAATGAACTGAACATAAAT
AAAGGATTCATTTCTTCATTCAGAAATGGAAATTCCCGGATTCAATGCGC
TCCTGTTAAGCTAGCCTAATCGGGGCTTTGAAATCAATAGGATAGACACT
AGTCTTTTTTTTTTGCTCTTTTTCTCAAATTGCAATTATTTGTCATTCTG
TCGAACTTCAAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001119XLOC_001119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002145-exon-sc0000018-1575043694:564819..565223TCONS_00002145-exon-sc0000018-1575043694:564819..565223Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1575043694:563492..564356TCONS_00002145-exon-sc0000018-1575043694:563492..564356Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1575043694:561257..563114TCONS_00002145-exon-sc0000018-1575043694:561257..563114Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1510915933:564819..565223TCONS_00002145-exon-sc0000018-1510915933:564819..565223Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1510915933:563492..564356TCONS_00002145-exon-sc0000018-1510915933:563492..564356Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1510915933:561257..563114TCONS_00002145-exon-sc0000018-1510915933:561257..563114Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1491911889:564819..565223TCONS_00002145-exon-sc0000018-1491911889:564819..565223Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1491911889:563492..564356TCONS_00002145-exon-sc0000018-1491911889:563492..564356Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1491911889:561257..563114TCONS_00002145-exon-sc0000018-1491911889:561257..563114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:561257..565223 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1827	0.225696	0.0693676	0.0540342	0.0492361	0.0388559	0	0.0798896	0.0255043	0.113946	0	0.0199215	6.92505	8.4375	2.50185	2.70973	1.38104	2.06072	10.1507	6.50981	4.84361	5.40746	1.92513	1.98512	2.83348	1.26378	0.363087	0.520838	10.3611	8.32706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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