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TCONS_00002145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002145
Unique NameTCONS_00002145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002145 ID=TCONS_00002145|Name=TCONS_00002145|organism=Clytia hemisphaerica|type=transcript|length=3128bp
ctctgtaccagagtgtatctcaagTTTATGGTTTAGTAAAAAAATTCCGT
ACGGAAACCTCTgtgatgaagtatgatttacaAATAGTAACACTTCTCTT
GTCGTCTCCCCTGTCTCACCCGCACTCTATCGCGGCGGtctgtttgaaaa
atctcaaatcagaacagacaatgacaacagaccctctacggcaatgaatt
ttgaaatttagccgtagatatcgggtctgtgtacagattAAGGCCACCGA
GACAAGATAAAGTTGTGAGCTCGATCACGCATTCAAGTAGAAATCATCCC
ACATGTATGTCGGATCGATTTCACAATCTGGTCCAGAATGTCGATCGATT
GGTTGCTGTTGGAGCCCTCTTGAAAATGACTCAACCGAACCATGGTGCTT
TTATAAAAACGTTACTAAACCATCAATCAGCTCCAGCATCGCAGTATCTC
AATCAACATCAATATCATCGTTAGCAGTGAAAACGTCATCAATTGAGCCT
TCTTTCTCAGTATTGGCAACTTCATCGATGCTACCATCCTTCACACCATC
ATCTCAAATAGATGAAACCTCTCTCTTGGCAACTTCATACAATACAATAT
CATCAGATATGTTCTCTACATCAATCTCTTTTATTGGATCGTCAACATCA
TCACTAATGGTTCTAGAAACTTCATTGTCATCAGCTGTGGAAACTTCAAT
GGCATCATCTCCAATAGATCTGGAAACTTCGTCATCACTTATCTTTGAAT
CTTCATCAGTATCTTTACCAATAACTTCATCCCCAATTTTACCAACAACA
CAACAATTCAGTTCTTCAATCAATATGGAATCAACATCGCCTACTCCCTC
AACAACCCTTTTCTTAGAATCAAGTTTTTCTTCATCAATGAACAGTAAGG
CGATGTCAACTATCATACAGAGTATCTCAATGACATCAATATCATCAAGC
TTTATGGAATCTTCAAACACTTCTTCGAATAAAACCTCTGCATCAACAAC
CAATAATCTTTCCATCATTTCAAGCAATGTCACCGGAGAAAAACCAACCA
TTTCATCAACAATGTTTCTACCTTTGAAACCAGAATCAATCCAACCATCA
AATGCGGCAACCTTACCAGCAAGTAGTACAATAGTAATAGTTTTGCCAGG
CAAACCAGTTCAAGTGACCAGGGCTGATGACAAATGGAAATGGATTTTGA
TCATTGTTGGTTCATCTGCTATATTCCTGATATTTCTACtgtgttgttgt
ttttgctGCCAAAGAAGAAGATTACGCAGGAAATTAGAGCAACACGAGGC
ACAAATAGAAGAGCTTCGTGAGATGTCTAGAAACAATAACAGTAGTTTAC
GAGGGCGAACATATTCCAACGTTTCTCTTGACAAAGAAGAGGCTATTCAA
CGTCATGAAAAGAACAAAGACTTATTAGCTCAGGACGGTAGTGAATTTAT
TGGTTTTACCAATGAAATGTTTCAACCAGACACATCTCGAACTGAGGTTC
GTAGGCCTTCTTTAGGACCTTCGAGATTACAGCCACCGCAGAAAAGATCA
AATCGTATCCCTTCGTTAAGCGATGCAGCCTTATTCCCTCACCCGCCTTT
TGATTTTATGAACCCTCTACATGAAGACGAACATAAAGGGAAACCTCGAT
CATCTTCTCCAGCCAATGCGGTACAAAAGAATGGAAATCCACAAGATGCA
GGTCCCCCATCGCCCCCGCCAccaccaccacctccaccaccagcTCAACC
ACAAACACCGGTCAAAATTCGTTCCAGCACTCTCAACTCGTTAGATCGAT
TTCAACAGCAACAAAATACATCGCCTATGGATTCACTGCTCGgtgaattc
aaaaagaaaatatcagttaCTGAGGCTCCAAGCAATGACCAAATAAGACC
TGTCAGAGCTTCTACGTTCTCAAAGAACGCTCATAAAGACACACCAAGTA
AACCTCGAAGAACAGCGACTGATGTGAATAAATTACCGACTGCTAAAAAA
CCGAATAGAATGCCAGCTAAGAAAGCAATGAATGGACATGTTAATGGTGA
TACAAATGAGAATGAATTTGAAGGATTTTATAATAGAACTTTTAACCCTG
AGATGAACGAATCTGCAAGTCGATTCTAGAGAAAGAGCAACTGTTGGAAA
AAGACTTTGGGTAGTCTTTGTAAGCCGTGCTTAAAAGCAAAATTTGTTTC
CATTTCTCATATTACGAAGGAACAATGGATATTTGAGAAAGATTAAGTCC
TGGGGGGGCACTACTGACTTTGACGGCCGACGtagacgtgccgctggagt
ctGAAAAGTGTACCCTGTCAGACATGAATTTTTGGTGAATTTGGAATTTG
GATTTTCACCCTAAAAAGATGTTTATTTCGTGAGTGTCTTTGAAGTGAAA
ATCTTCAATCTGGCTTATCTGTAGGACAGAACATtaatacacatcttgaa
aattagtaaatttgggactaTGTCGgatcagatatcttcagagcctaaaa
agggGGGAACCAACCAGCTAACCAGCGGCACATCCCTGTATCCAATTTTA
CCTAAGAGCCCCCCGACATCAAAGTTTAACTGACGAGCCTCAAAGACACT
CATggaattaaaacaaaagaagaaaatgttgatctgATTGAAAGTTTCAT
GTTCAAACCATGGGAACAAGGTCATGTAAATTACTTTTGGATAAAGCTTT
TTTTCAAGATTCGTGTATATAAATTTTAACGTTTAAATGTGAAATTCTAG
TCTCGTATTTGTATAAAGtgaaaaatcaaacaattttacAGACTACTTTG
TACATATTGTAGATGGTAGAAAATTGTGAGAAATTCAACAGTCGATAATG
ATAGATGAATATGTTGAGTGCGTGGAAACTGTTTTAATGATCTTTAAGGG
GTCTTTAGGCCTGGTTTAGCCAATCGGCAATTGACAAGCATTGAATGAAC
TGAACATAAATAAAGGATTCATTTCTTCATTCAGAAATGGAAATTCCCGG
ATTCAATGCGCTCCTGTTAAGCTAGCCTAatcggggctttgaaatcaata
gGATAGACActagtcttttttttttgctctttttctcaAATTGCAATTAT
TTGTCATTCTGTcgaacttcaaattttt
Run BLAST on NCBI

transcript from alignment at sc0000018:561257..565223-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002145 ID=TCONS_00002145|Name=TCONS_00002145|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at sc0000018:561257..565223- (Clytia hemisphaerica)
CTCTGTACCAGAGTGTATCTCAAGTTTATGGTTTAGTAAAAAAATTCCGT ACGGAAACCTCTGTGATGAAGTATGATTTACAAATAGTAACACTTCTCTT GTCGTCTCCCCTGTCTCACCCGCACTCTATCGCGGCGGTCTGTTTGAAAA ATCTCAAATCAGAACAGACAATGACAACAGACCCTCTACGGCAATGAATT TTGAAATTTAGCCGTAGATATCGGGTCTGTGTACAGATTAAGGCCACCGA GACAAGATAAAGTTGTGAGCTCGATCACGCATTCAAGTAGAAATCATCCC ACATGTATGTCGGATCGATTTCACAATCTGGTCCAGAATGTCGATCGATT GGTTGCTGTTGGAGCCCTCTTGAAAATGACTCAACCGAACCATGGTGCTT TTATAGTAGGTGCAATGATTGGTTGGATAACACTACCCCGTTTCTTAAAC TTATTGGTGATTATACCATCCTTACTCTATCTCACCAACAGTTTGCCAAG GTTTGCATAGCAATCGTACCAACTATTTTCCCTTGAAAATTTGGTCTAAG GAAAGCCTACTGAAGTTATATTGAGCCTAGCCTAAAGAATGATACTTAAA AGATCGTTCAAAACTTTAACTTTGTTGAGTCTTCTCTTGATCATTGGAGA TTCAGAAGAAAATCGCCCACAAAAACTAGAAAAAAGTGTTAATTTATAAA AAAGTGCCTTTTACATATTAACCGAATCAAAAATCTCAAATAACAGGCAG AATTGTGTGTAACCTTATATCTTTCACATTTGACTGATTGTCTTATACAA TATCCTAACATATTAAGATCCTCATTCATTAGAAACCACTTTATTTTTTG TACTTTTTGTATAATAGAAAACGTTACTAAACCATCAATCAGCTCCAGCA TCGCAGTATCTCAATCAACATCAATATCATCGTTAGCAGTGAAAACGTCA TCAATTGAGCCTTCTTTCTCAGTATTGGCAACTTCATCGATGCTACCATC CTTCACACCATCATCTCAAATAGATGAAACCTCTCTCTTGGCAACTTCAT ACAATACAATATCATCAGATATGTTCTCTACATCAATCTCTTTTATTGGA TCGTCAACATCATCACTAATGGTTCTAGAAACTTCATTGTCATCAGCTGT GGAAACTTCAATGGCATCATCTCCAATAGATCTGGAAACTTCGTCATCAC TTATCTTTGAATCTTCATCAGTATCTTTACCAATAACTTCATCCCCAATT TTACCAACAACACAACAATTCAGTTCTTCAATCAATATGGAATCAACATC GCCTACTCCCTCAACAACCCTTTTCTTAGAATCAAGTTTTTCTTCATCAA TGAACAGTAAGGCGATGTCAACTATCATACAGAGTATCTCAATGACATCA ATATCATCAAGCTTTATGGAATCTTCAAACACTTCTTCGAATAAAACCTC TGCATCAACAACCAATAATCTTTCCATCATTTCAAGCAATGTCACCGGAG AAAAACCAACCATTTCATCAACAATGTTTCTACCTTTGAAACCAGAATCA ATCCAACCATCAAATGCGGCAACCTTACCAGCAAGTAGTACAATAGTAAT AGTTTTGCCAGGCAAACCAGTTCAAGTGACCAGGGCTGATGACAAATGGA AATGGATTTTGATCATTGTTGGTTCATCTGCTATATTCCTGATATTTCTA CTGTGTTGTTGTTTTTGCTGCCAAAGAAGAAGGTCAGTTCTACATTGTGC ACACCTCTATATCAGAAACCATGGCCTCACACCCCCTTAAAAACTCGATC AATTTCCTTTGAACAAAATACCTCCGCATTTTTACTTTATTGGAATACTA TCATGTGCTTTTACCCTGAAAATCGTCGAGAAAATTGTCATACCTACCCA ATGAAAGCATAGGGAATGCTATCCCCATTAGAATTGTACTTTTTCGCTTT TTCCCATTCTTCTAAAAGGATTCTGAGCGTGTCACTTAGATAAGAGTGGT TTTACAATTTTTCGAAAGGAATAGAAGAGGAAACCCAAGTACTTTATTTT CTGACTAGTACACATACCACAGCCTCATATTAAACGATATCCCTTTCTTC TTACTTTAGATTACGCAGGAAATTAGAGCAACACGAGGCACAAATAGAAG AGCTTCGTGAGATGTCTAGAAACAATAACAGTAGTTTACGAGGGCGAACA TATTCCAACGTTTCTCTTGACAAAGAAGAGGCTATTCAACGTCATGAAAA GAACAAAGACTTATTAGCTCAGGACGGTAGTGAATTTATTGGTTTTACCA ATGAAATGTTTCAACCAGACACATCTCGAACTGAGGTTCGTAGGCCTTCT TTAGGACCTTCGAGATTACAGCCACCGCAGAAAAGATCAAATCGTATCCC TTCGTTAAGCGATGCAGCCTTATTCCCTCACCCGCCTTTTGATTTTATGA ACCCTCTACATGAAGACGAACATAAAGGGAAACCTCGATCATCTTCTCCA GCCAATGCGGTACAAAAGAATGGAAATCCACAAGATGCAGGTCCCCCATC GCCCCCGCCACCACCACCACCTCCACCACCAGCTCAACCACAAACACCGG TCAAAATTCGTTCCAGCACTCTCAACTCGTTAGATCGATTTCAACAGCAA CAAAATACATCGCCTATGGATTCACTGCTCGGTGAATTCAAAAAGAAAAT ATCAGTTACTGAGGCTCCAAGCAATGACCAAATAAGACCTGTCAGAGCTT CTACGTTCTCAAAGAACGCTCATAAAGACACACCAAGTAAACCTCGAAGA ACAGCGACTGATGTGAATAAATTACCGACTGCTAAAAAACCGAATAGAAT GCCAGCTAAGAAAGCAATGAATGGACATGTTAATGGTGATACAAATGAGA ATGAATTTGAAGGATTTTATAATAGAACTTTTAACCCTGAGATGAACGAA TCTGCAAGTCGATTCTAGAGAAAGAGCAACTGTTGGAAAAAGACTTTGGG TAGTCTTTGTAAGCCGTGCTTAAAAGCAAAATTTGTTTCCATTTCTCATA TTACGAAGGAACAATGGATATTTGAGAAAGATTAAGTCCTGGGGGGGCAC TACTGACTTTGACGGCCGACGTAGACGTGCCGCTGGAGTCTGAAAAGTGT ACCCTGTCAGACATGAATTTTTGGTGAATTTGGAATTTGGATTTTCACCC TAAAAAGATGTTTATTTCGTGAGTGTCTTTGAAGTGAAAATCTTCAATCT GGCTTATCTGTAGGACAGAACATTAATACACATCTTGAAAATTAGTAAAT TTGGGACTATGTCGGATCAGATATCTTCAGAGCCTAAAAAGGGGGGAACC AACCAGCTAACCAGCGGCACATCCCTGTATCCAATTTTACCTAAGAGCCC CCCGACATCAAAGTTTAACTGACGAGCCTCAAAGACACTCATGGAATTAA AACAAAAGAAGAAAATGTTGATCTGATTGAAAGTTTCATGTTCAAACCAT GGGAACAAGGTCATGTAAATTACTTTTGGATAAAGCTTTTTTTCAAGATT CGTGTATATAAATTTTAACGTTTAAATGTGAAATTCTAGTCTCGTATTTG TATAAAGTGAAAAATCAAACAATTTTACAGACTACTTTGTACATATTGTA GATGGTAGAAAATTGTGAGAAATTCAACAGTCGATAATGATAGATGAATA TGTTGAGTGCGTGGAAACTGTTTTAATGATCTTTAAGGGGTCTTTAGGCC TGGTTTAGCCAATCGGCAATTGACAAGCATTGAATGAACTGAACATAAAT AAAGGATTCATTTCTTCATTCAGAAATGGAAATTCCCGGATTCAATGCGC TCCTGTTAAGCTAGCCTAATCGGGGCTTTGAAATCAATAGGATAGACACT AGTCTTTTTTTTTTGCTCTTTTTCTCAAATTGCAATTATTTGTCATTCTG TCGAACTTCAAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001119XLOC_001119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002145-exon-sc0000018-1575043694:564819..565223TCONS_00002145-exon-sc0000018-1575043694:564819..565223Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1575043694:563492..564356TCONS_00002145-exon-sc0000018-1575043694:563492..564356Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1575043694:561257..563114TCONS_00002145-exon-sc0000018-1575043694:561257..563114Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1510915933:564819..565223TCONS_00002145-exon-sc0000018-1510915933:564819..565223Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1510915933:563492..564356TCONS_00002145-exon-sc0000018-1510915933:563492..564356Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1510915933:561257..563114TCONS_00002145-exon-sc0000018-1510915933:561257..563114Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1491911889:564819..565223TCONS_00002145-exon-sc0000018-1491911889:564819..565223Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1491911889:563492..564356TCONS_00002145-exon-sc0000018-1491911889:563492..564356Clytia hemisphaericaexon
TCONS_00002145-exon-sc0000018-1491911889:561257..563114TCONS_00002145-exon-sc0000018-1491911889:561257..563114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:561257..565223 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1827 0.225696 0.0693676 0.0540342 0.0492361 0.0388559 0 0.0798896 0.0255043 0.113946 0 0.0199215 6.92505 8.4375 2.50185 2.70973 1.38104 2.06072 10.1507 6.50981 4.84361 5.40746 1.92513 1.98512 2.83348 1.26378 0.363087 0.520838 10.3611 8.32706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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