|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002145 ID=TCONS_00002145|Name=TCONS_00002145|organism=Clytia hemisphaerica|type=transcript|length=3128bp ctctgtaccagagtgtatctcaagTTTATGGTTTAGTAAAAAAATTCCGT ACGGAAACCTCTgtgatgaagtatgatttacaAATAGTAACACTTCTCTT GTCGTCTCCCCTGTCTCACCCGCACTCTATCGCGGCGGtctgtttgaaaa atctcaaatcagaacagacaatgacaacagaccctctacggcaatgaatt ttgaaatttagccgtagatatcgggtctgtgtacagattAAGGCCACCGA GACAAGATAAAGTTGTGAGCTCGATCACGCATTCAAGTAGAAATCATCCC ACATGTATGTCGGATCGATTTCACAATCTGGTCCAGAATGTCGATCGATT GGTTGCTGTTGGAGCCCTCTTGAAAATGACTCAACCGAACCATGGTGCTT TTATAAAAACGTTACTAAACCATCAATCAGCTCCAGCATCGCAGTATCTC AATCAACATCAATATCATCGTTAGCAGTGAAAACGTCATCAATTGAGCCT TCTTTCTCAGTATTGGCAACTTCATCGATGCTACCATCCTTCACACCATC ATCTCAAATAGATGAAACCTCTCTCTTGGCAACTTCATACAATACAATAT CATCAGATATGTTCTCTACATCAATCTCTTTTATTGGATCGTCAACATCA TCACTAATGGTTCTAGAAACTTCATTGTCATCAGCTGTGGAAACTTCAAT GGCATCATCTCCAATAGATCTGGAAACTTCGTCATCACTTATCTTTGAAT CTTCATCAGTATCTTTACCAATAACTTCATCCCCAATTTTACCAACAACA CAACAATTCAGTTCTTCAATCAATATGGAATCAACATCGCCTACTCCCTC AACAACCCTTTTCTTAGAATCAAGTTTTTCTTCATCAATGAACAGTAAGG CGATGTCAACTATCATACAGAGTATCTCAATGACATCAATATCATCAAGC TTTATGGAATCTTCAAACACTTCTTCGAATAAAACCTCTGCATCAACAAC CAATAATCTTTCCATCATTTCAAGCAATGTCACCGGAGAAAAACCAACCA TTTCATCAACAATGTTTCTACCTTTGAAACCAGAATCAATCCAACCATCA AATGCGGCAACCTTACCAGCAAGTAGTACAATAGTAATAGTTTTGCCAGG CAAACCAGTTCAAGTGACCAGGGCTGATGACAAATGGAAATGGATTTTGA TCATTGTTGGTTCATCTGCTATATTCCTGATATTTCTACtgtgttgttgt ttttgctGCCAAAGAAGAAGATTACGCAGGAAATTAGAGCAACACGAGGC ACAAATAGAAGAGCTTCGTGAGATGTCTAGAAACAATAACAGTAGTTTAC GAGGGCGAACATATTCCAACGTTTCTCTTGACAAAGAAGAGGCTATTCAA CGTCATGAAAAGAACAAAGACTTATTAGCTCAGGACGGTAGTGAATTTAT TGGTTTTACCAATGAAATGTTTCAACCAGACACATCTCGAACTGAGGTTC GTAGGCCTTCTTTAGGACCTTCGAGATTACAGCCACCGCAGAAAAGATCA AATCGTATCCCTTCGTTAAGCGATGCAGCCTTATTCCCTCACCCGCCTTT TGATTTTATGAACCCTCTACATGAAGACGAACATAAAGGGAAACCTCGAT CATCTTCTCCAGCCAATGCGGTACAAAAGAATGGAAATCCACAAGATGCA GGTCCCCCATCGCCCCCGCCAccaccaccacctccaccaccagcTCAACC ACAAACACCGGTCAAAATTCGTTCCAGCACTCTCAACTCGTTAGATCGAT TTCAACAGCAACAAAATACATCGCCTATGGATTCACTGCTCGgtgaattc aaaaagaaaatatcagttaCTGAGGCTCCAAGCAATGACCAAATAAGACC TGTCAGAGCTTCTACGTTCTCAAAGAACGCTCATAAAGACACACCAAGTA AACCTCGAAGAACAGCGACTGATGTGAATAAATTACCGACTGCTAAAAAA CCGAATAGAATGCCAGCTAAGAAAGCAATGAATGGACATGTTAATGGTGA TACAAATGAGAATGAATTTGAAGGATTTTATAATAGAACTTTTAACCCTG AGATGAACGAATCTGCAAGTCGATTCTAGAGAAAGAGCAACTGTTGGAAA AAGACTTTGGGTAGTCTTTGTAAGCCGTGCTTAAAAGCAAAATTTGTTTC CATTTCTCATATTACGAAGGAACAATGGATATTTGAGAAAGATTAAGTCC TGGGGGGGCACTACTGACTTTGACGGCCGACGtagacgtgccgctggagt ctGAAAAGTGTACCCTGTCAGACATGAATTTTTGGTGAATTTGGAATTTG GATTTTCACCCTAAAAAGATGTTTATTTCGTGAGTGTCTTTGAAGTGAAA ATCTTCAATCTGGCTTATCTGTAGGACAGAACATtaatacacatcttgaa aattagtaaatttgggactaTGTCGgatcagatatcttcagagcctaaaa agggGGGAACCAACCAGCTAACCAGCGGCACATCCCTGTATCCAATTTTA CCTAAGAGCCCCCCGACATCAAAGTTTAACTGACGAGCCTCAAAGACACT CATggaattaaaacaaaagaagaaaatgttgatctgATTGAAAGTTTCAT GTTCAAACCATGGGAACAAGGTCATGTAAATTACTTTTGGATAAAGCTTT TTTTCAAGATTCGTGTATATAAATTTTAACGTTTAAATGTGAAATTCTAG TCTCGTATTTGTATAAAGtgaaaaatcaaacaattttacAGACTACTTTG TACATATTGTAGATGGTAGAAAATTGTGAGAAATTCAACAGTCGATAATG ATAGATGAATATGTTGAGTGCGTGGAAACTGTTTTAATGATCTTTAAGGG GTCTTTAGGCCTGGTTTAGCCAATCGGCAATTGACAAGCATTGAATGAAC TGAACATAAATAAAGGATTCATTTCTTCATTCAGAAATGGAAATTCCCGG ATTCAATGCGCTCCTGTTAAGCTAGCCTAatcggggctttgaaatcaata gGATAGACActagtcttttttttttgctctttttctcaAATTGCAATTAT TTGTCATTCTGTcgaacttcaaattttt Run BLAST on NCBI transcript from alignment at sc0000018:561257..565223- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002145 ID=TCONS_00002145|Name=TCONS_00002145|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at sc0000018:561257..565223- (Clytia hemisphaerica) CTCTGTACCAGAGTGTATCTCAAGTTTATGGTTTAGTAAAAAAATTCCGT
ACGGAAACCTCTGTGATGAAGTATGATTTACAAATAGTAACACTTCTCTT
GTCGTCTCCCCTGTCTCACCCGCACTCTATCGCGGCGGTCTGTTTGAAAA
ATCTCAAATCAGAACAGACAATGACAACAGACCCTCTACGGCAATGAATT
TTGAAATTTAGCCGTAGATATCGGGTCTGTGTACAGATTAAGGCCACCGA
GACAAGATAAAGTTGTGAGCTCGATCACGCATTCAAGTAGAAATCATCCC
ACATGTATGTCGGATCGATTTCACAATCTGGTCCAGAATGTCGATCGATT
GGTTGCTGTTGGAGCCCTCTTGAAAATGACTCAACCGAACCATGGTGCTT
TTATAGTAGGTGCAATGATTGGTTGGATAACACTACCCCGTTTCTTAAAC
TTATTGGTGATTATACCATCCTTACTCTATCTCACCAACAGTTTGCCAAG
GTTTGCATAGCAATCGTACCAACTATTTTCCCTTGAAAATTTGGTCTAAG
GAAAGCCTACTGAAGTTATATTGAGCCTAGCCTAAAGAATGATACTTAAA
AGATCGTTCAAAACTTTAACTTTGTTGAGTCTTCTCTTGATCATTGGAGA
TTCAGAAGAAAATCGCCCACAAAAACTAGAAAAAAGTGTTAATTTATAAA
AAAGTGCCTTTTACATATTAACCGAATCAAAAATCTCAAATAACAGGCAG
AATTGTGTGTAACCTTATATCTTTCACATTTGACTGATTGTCTTATACAA
TATCCTAACATATTAAGATCCTCATTCATTAGAAACCACTTTATTTTTTG
TACTTTTTGTATAATAGAAAACGTTACTAAACCATCAATCAGCTCCAGCA
TCGCAGTATCTCAATCAACATCAATATCATCGTTAGCAGTGAAAACGTCA
TCAATTGAGCCTTCTTTCTCAGTATTGGCAACTTCATCGATGCTACCATC
CTTCACACCATCATCTCAAATAGATGAAACCTCTCTCTTGGCAACTTCAT
ACAATACAATATCATCAGATATGTTCTCTACATCAATCTCTTTTATTGGA
TCGTCAACATCATCACTAATGGTTCTAGAAACTTCATTGTCATCAGCTGT
GGAAACTTCAATGGCATCATCTCCAATAGATCTGGAAACTTCGTCATCAC
TTATCTTTGAATCTTCATCAGTATCTTTACCAATAACTTCATCCCCAATT
TTACCAACAACACAACAATTCAGTTCTTCAATCAATATGGAATCAACATC
GCCTACTCCCTCAACAACCCTTTTCTTAGAATCAAGTTTTTCTTCATCAA
TGAACAGTAAGGCGATGTCAACTATCATACAGAGTATCTCAATGACATCA
ATATCATCAAGCTTTATGGAATCTTCAAACACTTCTTCGAATAAAACCTC
TGCATCAACAACCAATAATCTTTCCATCATTTCAAGCAATGTCACCGGAG
AAAAACCAACCATTTCATCAACAATGTTTCTACCTTTGAAACCAGAATCA
ATCCAACCATCAAATGCGGCAACCTTACCAGCAAGTAGTACAATAGTAAT
AGTTTTGCCAGGCAAACCAGTTCAAGTGACCAGGGCTGATGACAAATGGA
AATGGATTTTGATCATTGTTGGTTCATCTGCTATATTCCTGATATTTCTA
CTGTGTTGTTGTTTTTGCTGCCAAAGAAGAAGGTCAGTTCTACATTGTGC
ACACCTCTATATCAGAAACCATGGCCTCACACCCCCTTAAAAACTCGATC
AATTTCCTTTGAACAAAATACCTCCGCATTTTTACTTTATTGGAATACTA
TCATGTGCTTTTACCCTGAAAATCGTCGAGAAAATTGTCATACCTACCCA
ATGAAAGCATAGGGAATGCTATCCCCATTAGAATTGTACTTTTTCGCTTT
TTCCCATTCTTCTAAAAGGATTCTGAGCGTGTCACTTAGATAAGAGTGGT
TTTACAATTTTTCGAAAGGAATAGAAGAGGAAACCCAAGTACTTTATTTT
CTGACTAGTACACATACCACAGCCTCATATTAAACGATATCCCTTTCTTC
TTACTTTAGATTACGCAGGAAATTAGAGCAACACGAGGCACAAATAGAAG
AGCTTCGTGAGATGTCTAGAAACAATAACAGTAGTTTACGAGGGCGAACA
TATTCCAACGTTTCTCTTGACAAAGAAGAGGCTATTCAACGTCATGAAAA
GAACAAAGACTTATTAGCTCAGGACGGTAGTGAATTTATTGGTTTTACCA
ATGAAATGTTTCAACCAGACACATCTCGAACTGAGGTTCGTAGGCCTTCT
TTAGGACCTTCGAGATTACAGCCACCGCAGAAAAGATCAAATCGTATCCC
TTCGTTAAGCGATGCAGCCTTATTCCCTCACCCGCCTTTTGATTTTATGA
ACCCTCTACATGAAGACGAACATAAAGGGAAACCTCGATCATCTTCTCCA
GCCAATGCGGTACAAAAGAATGGAAATCCACAAGATGCAGGTCCCCCATC
GCCCCCGCCACCACCACCACCTCCACCACCAGCTCAACCACAAACACCGG
TCAAAATTCGTTCCAGCACTCTCAACTCGTTAGATCGATTTCAACAGCAA
CAAAATACATCGCCTATGGATTCACTGCTCGGTGAATTCAAAAAGAAAAT
ATCAGTTACTGAGGCTCCAAGCAATGACCAAATAAGACCTGTCAGAGCTT
CTACGTTCTCAAAGAACGCTCATAAAGACACACCAAGTAAACCTCGAAGA
ACAGCGACTGATGTGAATAAATTACCGACTGCTAAAAAACCGAATAGAAT
GCCAGCTAAGAAAGCAATGAATGGACATGTTAATGGTGATACAAATGAGA
ATGAATTTGAAGGATTTTATAATAGAACTTTTAACCCTGAGATGAACGAA
TCTGCAAGTCGATTCTAGAGAAAGAGCAACTGTTGGAAAAAGACTTTGGG
TAGTCTTTGTAAGCCGTGCTTAAAAGCAAAATTTGTTTCCATTTCTCATA
TTACGAAGGAACAATGGATATTTGAGAAAGATTAAGTCCTGGGGGGGCAC
TACTGACTTTGACGGCCGACGTAGACGTGCCGCTGGAGTCTGAAAAGTGT
ACCCTGTCAGACATGAATTTTTGGTGAATTTGGAATTTGGATTTTCACCC
TAAAAAGATGTTTATTTCGTGAGTGTCTTTGAAGTGAAAATCTTCAATCT
GGCTTATCTGTAGGACAGAACATTAATACACATCTTGAAAATTAGTAAAT
TTGGGACTATGTCGGATCAGATATCTTCAGAGCCTAAAAAGGGGGGAACC
AACCAGCTAACCAGCGGCACATCCCTGTATCCAATTTTACCTAAGAGCCC
CCCGACATCAAAGTTTAACTGACGAGCCTCAAAGACACTCATGGAATTAA
AACAAAAGAAGAAAATGTTGATCTGATTGAAAGTTTCATGTTCAAACCAT
GGGAACAAGGTCATGTAAATTACTTTTGGATAAAGCTTTTTTTCAAGATT
CGTGTATATAAATTTTAACGTTTAAATGTGAAATTCTAGTCTCGTATTTG
TATAAAGTGAAAAATCAAACAATTTTACAGACTACTTTGTACATATTGTA
GATGGTAGAAAATTGTGAGAAATTCAACAGTCGATAATGATAGATGAATA
TGTTGAGTGCGTGGAAACTGTTTTAATGATCTTTAAGGGGTCTTTAGGCC
TGGTTTAGCCAATCGGCAATTGACAAGCATTGAATGAACTGAACATAAAT
AAAGGATTCATTTCTTCATTCAGAAATGGAAATTCCCGGATTCAATGCGC
TCCTGTTAAGCTAGCCTAATCGGGGCTTTGAAATCAATAGGATAGACACT
AGTCTTTTTTTTTTGCTCTTTTTCTCAAATTGCAATTATTTGTCATTCTG
TCGAACTTCAAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002145-exon-sc0000018-1575043694:564819..565223 | TCONS_00002145-exon-sc0000018-1575043694:564819..565223 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1575043694:563492..564356 | TCONS_00002145-exon-sc0000018-1575043694:563492..564356 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1575043694:561257..563114 | TCONS_00002145-exon-sc0000018-1575043694:561257..563114 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1510915933:564819..565223 | TCONS_00002145-exon-sc0000018-1510915933:564819..565223 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1510915933:563492..564356 | TCONS_00002145-exon-sc0000018-1510915933:563492..564356 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1510915933:561257..563114 | TCONS_00002145-exon-sc0000018-1510915933:561257..563114 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1491911889:564819..565223 | TCONS_00002145-exon-sc0000018-1491911889:564819..565223 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1491911889:563492..564356 | TCONS_00002145-exon-sc0000018-1491911889:563492..564356 | Clytia hemisphaerica | exon |
TCONS_00002145-exon-sc0000018-1491911889:561257..563114 | TCONS_00002145-exon-sc0000018-1491911889:561257..563114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000018 | supercontig | sc0000018:561257..565223 - |
Blast
The following BLAST results are available for this feature:
|