Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00002139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002139
Unique NameTCONS_00002139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002139 ID=TCONS_00002139|Name=TCONS_00002139|organism=Clytia hemisphaerica|type=transcript|length=1672bp
AAAGGATTCAGGTTAATCAAAGaTATTGAAGAAATCTTATATAGATgatg
tttaaaagaaaaagaaaaaatataattatttttgtcGTTGGCTGTTTCTG
TGGTatttatttggaaaatatattgaAGAAATATATGGATAGAAGATTCT
ACAGTAACCAAGAGGACACAAATAACACGTGGCATTTGGTACCTGAAAAG
CACAACATCAAAAATGGGGCATTATATTTTACTGGGAAAAATTTATATCA
CAAAAATAGTGAAGCTTCAAACTATTTTCATTCTATACCGATATTGTGTT
GGGTATTGACAACTAAAGACACTTTACATACAAAAGCACAGGCAGTCAAA
GACACTTGGGGTCAGCGCTGCCAAGtacttttatttttcagctCAGAAGA
TGACCCAAGTTTCCCAGCTATATCTTTAGATGTAAAAGAAGGGTACATGA
ACCTTCATGAAAAGGTTAAAGCAGCTTGGCGGTACATTTTCAAACACCAT
TCCAAGGATGCCAGCTGGTTCATCAAAGCTGACGATGACACATTCCTTAT
CATGGAAAATTTACGACATTTCTTATCCAGTTATTCTTCAAGTGATAAAC
TATTTTTCGGTCATAACTTGTGGCATCATAGCACAGACTACAATAGCGGT
GGTGCCGGCTATATATTTAGTAGGCAGACTTTGATAGAGTATTTTAGTAT
CTCAAAAACCTGTGAGTCTAAATCTAATGCAGAGGACGTTGCAGTTGCAG
CTTGTTTGAAGAAGGTTGGGATCACACCATCAGATACTCGAGATGATGAT
GGTAGGGAGACATTCCATCCATTTGCGCCAGACTTTCATTTAATACCGGG
TAGTATTGGCAAAGACAATTGGTTATATCAAAGAAGTCGATGGGAGCTGG
TAGAAGGTGTTGGGTGTTGTTCTAAATATTCGATTGCATTTCATTATACA
ACTACTAAAAGAATGTATTTATTGAACTATTATTTATATGTTTTGAAGAA
AGGATTTTGAtaaggaaaatattctttaaaaggaTAATTTATTGAAGTAC
ATTTAATTTGCTTTAAATTTCTACCTCTTGACAATATTCAGTggtttttg
ttttggaaaaacGAATATGTGAAAGGAGCAAGCAGAAAAGTCAGTTGTGT
TTTATCTTAAATTGATCATCAAATAACTTCTTTAGTTAACACTTACTTCA
TAACAAACGTTTTTAATACAGGGTGTACCAATACTACAAAGTTAACGAAG
TCATGTGGCATGAGCAATACCTTGCGCGTGCCAAAATAGCACTCCATAAA
AAATATGTCATAGATTATGACGTGCTAACAGCCCTTGCAAAAGGGATTTT
GTAcattcttgtatattttaggagTGCCATTTTAGCACTTGCAAACCATT
TTAGGTGTGTGCCAGCGTGTGCGAGTGCAACAGCACGCCATACACGGCCA
GACCTGCATGTGAATACAAGTTGTACAAGACTGCAAAGTAAACGAAGTCA
TTTTAGTGCTGGGTTATGTCTGATTTCCTGGACCCTTATTTACTAGGAGA
TAATCGTAATTGGCATTTTATTTATAATTAGGgataaaaaagttttgtat
atttttatgcaGTGTAAAAAATGTACATATGGTCATATTTTTGTTGTAGA
TAAACTTGAATTTACTTTCGAA
Run BLAST on NCBI

protein sequence of TCONS_00002139-protein

>TCONS_00002139-protein ID=TCONS_00002139-protein|Name=TCONS_00002139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MMFKRKRKNIIIFVVGCFCGIYLENILKKYMDRRFYSNQEDTNNTWHLVP
EKHNIKNGALYFTGKNLYHKNSEASNYFHSIPILCWVLTTKDTLHTKAQA
VKDTWGQRCQVLLFFSSEDDPSFPAISLDVKEGYMNLHEKVKAAWRYIFK
HHSKDASWFIKADDDTFLIMENLRHFLSSYSSSDKLFFGHNLWHHSTDYN
SGGAGYIFSRQTLIEYFSISKTCESKSNAEDVAVAACLKKVGITPSDTRD
DDGRETFHPFAPDFHLIPGSIGKDNWLYQRSRWELVEGVGCCSKYSIAFH
YTTTKRMYLLNYYLYVLKKGF
Run BLAST on NCBI

transcript from alignment at sc0000018:376201..383596-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002139 ID=TCONS_00002139|Name=TCONS_00002139|organism=Clytia hemisphaerica|type=transcript|length=7396bp|location=Sequence derived from alignment at sc0000018:376201..383596- (Clytia hemisphaerica)
AAAGGATTCAGGTTAATCAAAGGTAAGATTTTTGTATTTTTGAATTAAAA ATGTGCTGAATTGTGTAGTATTTTTTATTTTCTCTATAAATTTCCAGACT TTCTTGTCAAATTTCAATCAAGCTGATAAGAAAACGAAAGTGAAAGTGAA GAAGGGCAGTCTTTTGAATATTAACTAATTTACTCCATCACCAATTTTTT TTTTAATGATTTTTTAAAAGTCTTATTAAATATTCTAAGCTTAATAAAGT CTTATATCAGGATTAGAAACTAGGCTAGTCTCCCGGGGGGGGGGGACTTA GGCAAAATGGGTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNTTTTGACCAAAAATTGGTGAAAATCAAACCAAGATTTG GAAAAAATGGACCAAAATTTAGGAAAAAGTCTCTCAAAGGGTCCCAAAAT CACCAACATTTTGTTTCTCAAAGGGTCGATTTTCGATTTTCGGCTCGGAT ATACCCGTCACCTCGCAAACCTAGTACCCCCCCCCGGGCTAGTCTATTAC CTTTTTTTATCTTTCCCCTTAGCTTAGCCTTACTATACTGTATATAATCA TACAATGCTGGCAAAAGTAAGTTGACACAACACAGTGATGATTGACAAGT AATCCCTGAGAAAAGCATAGTGTGAACCCTTCCCCTTTTTTGGGGGGATC CACAACTTTTCCAAAAATGCTTTATAGGCAGGGGGAGTGGGGGGATAGGA GATTTTCCAAAAGAAATGGGGGGTTTAAGATTTTAGGGACCCCTCCCAAG TAAAAATAGGGGGGATAATAACTTTTGGTCACAATATCTATCATATTTAT TATATTGTATATCGAGTTTATCGTTCTAAATCTGCAATTTGAGCTTTACT AAGCTCATTAATTTTGACGTCAATCGATACTTCGATTATCAGCAGGATTG AGAGAGAATGACACATTTGAAGGTAGTGAAGGTGTAGAGAGTCTATCACT ATATTTCCCTAGCACCCTGCCTGGAAGCGTCATTTCCAGCCCCAAAATGC GAGTCGGTCGGTGTGAATATCAGAATAACTTAAAAGGCGAAGTTTTCTGG AAGTCTACTACTCTCTTTACTGGAAATAGTCCATGGTAACCTCTAAAGTA TTCCTTATGCGACAAAATTGAGATTTCCTCTGTGCTGACTTGTCAGCTCA ATGAATTTTTATAAGAACATGAATGTAGTTTGCTAAAGGCTTGATGAAAT TTTGAAAAGGTAGCTCCACTTTACCATTAGGGCTTCCTTTCCAGGTATAG TTTCCAATCCTGAAGATTGAAAGCTCTAATACAATCAGTAAAAAATCTTA CACGGGAAAACGGGGAAAATGTTGAAGACAACCAGACCCCCTTTTTACGA CTTTAGAAAATTTTTAGAAAAGTCATAACTTTTGAACCACTTGAGCTAGT GTTGTCTGAAATTTTCAACATTTCATCATACCGGGTTACCCACGAAAAAG TTCAGACGTTTCCCGACGTCTTGAGGCCGAACAAATGCCCCAAAGTGCTT GGAGTTTTGATATTTAGAAAGTAGATATCCTAACTTAAAATTTGAGCCAT CACTTTTTAAATTTGACCAACTTGTTCTCTACTTACGAGCTTTTAAAGTC AAAATTCACTTTTCGAAAAGTGTAAAAAAACACGTAAAAAAGAGGTATTA AATTCATGCAATCAATTGGAAAATCACTTACAAATTGACTTATTTAACGA GTTTTATGACATTAATAATTAATAAAAACACCTTTGAAAGTAATTTTTGT TTAAAACAAGACTAGTTTTTATAAANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAATTTTGAC TTTAAAAGCTCATAAGTAGAGAACAATTTGGTCAAATTTAAANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNTCTACTTTCTAAATATCAAAACTCCAAGCACTTTGGGACATTT GTTCGGCCTCAAGACGTCGGGAAACGTCTGAACTTTTTCGTGGGTCACCC GGTATTATTATATAGAATATAAATGCCAAATTTCAGCAATGGAAATGTCA TGGGTCAGGATGTCATCATGTCAAGTTGATAACCCTAAAGGCCTGTTTCC ATCGATCGCGCGAGCGTGCACGCTAGGGCAAAATTTCCTAAAATAGCCTA TTGACGTCACGAATTAAATTTTCTTGTACACAAAAAGTGTACGCTCTTGT ATGCTTTTGTGCTCTTTTCTACGCTGAAAATTTTCAACTTTTTTGAGCGT ACAGGAGCGCACATCTCAATTGACAATTTTTTAAACAATCAAGAAAGCGA AAAACTGCTGAGTAAACAAAAAAATGTAAACATACAGATTGTGTATGTTT TTTATGGAAATCAAACATTGATCGCGCCGAGTGTGCGGCCAAATCTATTT TAAGAATTTTGGCCTAGCTTGCACGCTCGCGCGATCGATGGAAACAGGCC TTAAACACGACCCTGCTGGTGCACCCGACAGTCGGGTGCTGTCGGGTGTT TTATCGGGTGCTGAAATTTCTAAATTTGCAAAAACACCTGACAATAGCGC ACCCAACAGTCGGGTGCTAAAATTCCTAACTTTATTACATATCGAGTGCT GTTAAAAGCGTCCAAGATAAAAAAAGTCCGAAAAATGGCGATTTCGATGA CGTCAGCATTATTGATGACAGTAAAAAATTAAAACGTCGACCAGCTCATC ATGTAGCCCTGATCATAGGCTTTCAGCAGAAAAGTATATGGTTTAGTGGT ATGTTTAAGTAGCACCCGACAAAAGTGCACCCGACTGTCGGGTGTTTAAA TTTCTAACTTCAAACACCCAACAACAGCACCCAACTGTCGGGTGCACCGG CAGGGTCATCCCTAAACTCACTAGTTCTGCATGATTGAATGACCAGTTTT TGACACCAAAACTGACTTAACTCAAAAAATTAAGATGATGATGATTTCAG TACCTAACTCCAGATATTGAGCTTCAAAAAGCGCAAAAACTGGACAAAAC AGCTGTTTCTGGCTGGAAAACACGGTTTTCAAGGGTTAATGTCTCGAGTT AATTACAGAAATCACCTATACTTGCAATATATCTCTAATCTTAATTTTTT GAGAGCTTTCCAAAAAATATACAACAGGTCTCCGTTTTCTCAAGCTAAAA TTTCATTAATTGTTGACCCTATGATTTTTGCCTGAGACCGTCATATTTGT CCGAAAATCACGTACCAAAGTGTCCGAAAAAAATTGGAAACATCATTATT TCAATTTTTCTAGAGTTGAAGTTTCCAAAATGTATNACCAAAGTGTCCGA AAAAGATTGGAAACATCATTATTTCAATTTTTCTAGAGTTGAAGTTTCCA AAATGTATAACAAGTGCTTCTAACAAAACAATCGAGCGATTTCAAAAAAT CAAACAAAATTCCCCCTACTAACGCTTCATTTTAGTAGTCAACCATGAAT TAGTATCAATATCATCCAGTTATTATCATTAAAATGTTTTACTAATGATA AAACATCAAAAATCAGCATTTTCAGGGTTTTAGACCCTTTTTGTCAGTTT TTGGCCTGGCAATTCCTGAAAAATGTATGAAATCAAAATTTCTTTTCAGA TTATTGTTATTCAGGTAGAAATGCATCAAAAAACTCTAGCACAGTAGGAT TCAAAGATAGTGCTGTTTTACCCCTACCCCTAAAAGACAATTGGTCAAAA GAAAGTGATTACATAAAAACAGGGCTATTATATCACAGATTAATCACCTT ACTTGTCCCTTACATTTCCAAGCTAAATGTAATCATGCATCCCTTCTGAT GTGTTTTGATATAAAAGGGATGCATATTTCTCTACCAACTTAACCCTGTC TATTATTTTTCCTTTTTTCTTTTTTAATTATGCGTTATTGCAATAGCGCT CCGCAACACATACGTCATAATTATTACTTTTCACTTTTTTTGACATTTGT ACGAGTTGCAATCCCACAATTCAACGCAGCTCAATTAAAGATACGTGCAA GCTGTTATATATCTTTTGTCAAACGATGCAATTAACGTGCAAAAGATTGA TGGGATTGGAACTCGTACAAACACATCGAGAGTTATGATTATGTCAAAAA TAAAATCTATTTTTAGATTCAGCGCGGTGCGCTATACAGCGAATTCTATT GTTCAATGAATGAAAATTTATAATGATGAAAAAAAAAACACAATGACTTT AATTTTTTCTTTCTTTGATGGGATGTGACGAAATTATGTAAATTTGTGCA ACTTTTGGTTACCCACAATTTGGGGTAACTCTTGGACAGGAATTTGATAC ACAATATGCATCCCCTATATCAAAAGCAATTCTGGGGATGCACGCAGCCT AGTAATTTAAGATATGTTGAAATAGTTTCCGTGCCAACAGGTACCCCAAC AAAGATATGTTACCCTATCTTACCCCAAATAGAGCTTTTCCTAATCATGA TGTCATATTGAATAATTAAAAAACTTCAGCATAAGTTAATATTGTATTAT TATTGTTCAACTTGAAAGATATGCATCCTGATTAGAAAAAGGTATTTTTA TCAACATATGGTTTTGTCTCAAAATATTTCTATATTTTTAGATATTGAAG AAATCTTATATAGATGATGTTTAAAAGAAAAAGAAAAAATATAATTATTT TTGTCGTTGGCTGTTTCTGTGGTATTTATTTGGAAAATATATTGAAGAAA TATATGGATAGAAGATTCTACAGTAACCAAGAGGACACAAATAACACGTG GCATTTGGTACCTGAAAAGCACAACATCAAAAATGGGGCATTATATTTTA CTGGGAAAAATTTATATCACAAAAATAGTGAAGCTTCAAACTATTTTCAT TCTATACCGATATTGTGTTGGGTATTGACAACTAAAGACACTTTACATAC AAAAGCACAGGCAGTCAAAGACACTTGGGGTCAGCGCTGCCAAGTACTTT TATTTTTCAGCTCAGAAGATGACCCAAGTTTCCCAGCTATATCTTTAGAT GTAAAAGAAGGTATAAATAATTATTTTTCATTTTGTTTGAAATAACATTT CTCACTTTGGATTCTTTCTAATAAAGTTTGATGGTTTGAAATATACATGT TTTGCCTTTTTAGGAACCCACTTTTGGTTTAGTTTGAGAATTGAATTTCT TGTGAAACTCTTTTAATGAAGACACAAACTCCTCTTATATGAAGTTGAAG ACACTTTTCGGCATCATATCAAACCAAAATATTTTTGAATTATTTTCAAT ACTTTTAATTCACAGGGTACATGAACCTTCATGAAAAGGTTAAAGCAGCT TGGCGGTACATTTTCAAACACCATTCCAAGGATGCCAGCTGGTTCATCAA AGCTGACGATGACACATTCCTTATCATGGAAAATTTACGACATTTCTTAT CCAGTTATTCTTCAAGTGATAAACTATTTTTCGGTCATAACTTGTGGCAT CATAGCACAGACTACAATAGCGGTGGTGCCGGCTATATATTTAGTAGGCA GACTTTGATAGAGTATTTTAGTATCTCAAAAACCTGTGAGTCTAAATCTA ATGCAGAGGACGTTGCAGTTGCAGCTTGTTTGAAGAAGGTTGGGATCACA CCATCAGATACTCGAGATGATGATGGTAGGGAGACATTCCATCCATTTGC GCCAGACTTTCATTTAATACCGGGTAGTATTGGCAAAGACAATTGGTTAT ATCAAAGAAGTCGATGGGAGCTGGTAGAAGGTGTTGGGTGTTGTTCTAAA TATTCGATTGCATTTCATTATACAACTACTAAAAGAATGTATTTATTGAA CTATTATTTATATGTTTTGAAGAAAGGATTTTGATAAGGAAAATATTCTT TAAAAGGATAATTTATTGAAGTACATTTAATTTGCTTTAAATTTCTACCT CTTGACAATATTCAGTGGTTTTTGTTTTGGAAAAACGAATATGTGAAAGG AGCAAGCAGAAAAGTCAGTTGTGTTTTATCTTAAATTGATCATCAAATAA CTTCTTTAGTTAACACTTACTTCATAACAAACGTTTTTAATACAGGGTGT ACCAATACTACAAAGTTAACGAAGTCATGTGGCATGAGCAATACCTTGCG CGTGCCAAAATAGCACTCCATAAAAAATATGTCATAGATTATGACGTGCT AACAGCCCTTGCAAAAGGGATTTTGTACATTCTTGTATATTTTAGGAGTG CCATTTTAGCACTTGCAAACCATTTTAGGTGTGTGCCAGCGTGTGCGAGT GCAACAGCACGCCATACACGGCCAGACCTGCATGTGAATACAAGTTGTAC AAGACTGCAAAGTAAACGAAGTCATTTTAGTGCTGGGTTATGTCTGATTT CCTGGACCCTTATTTACTAGGAGATAATCGTAATTGGCATTTTATTTATA ATTAGGGATAAAAAAGTTTTGTATATTTTTATGCAGTGTAAAAAATGTAC ATATGGTCATATTTTTGTTGTAGATAAACTTGAATTTACTTTCGAA

Coding sequence (CDS) from alignment at sc0000018:376201..383596-

>TCONS_00002139 ID=TCONS_00002139|Name=TCONS_00002139|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at sc0000018:376201..383596- (Clytia hemisphaerica)
GGTACATGAACCTTCATGAAAAGGTTAAAGCAGCTTGGCGGTACATTTTC
AAACACCATTCCAAGGATGCCAGCTGGTTCATCAAAGCTGACGATGACAC
ATTCCTTATCATGGAAAATTTACGACATTTCTTATCCAGTTATTCTTCAA
GTGATAAACTATTTTTCGGTCATAACTTGTGGCATCATAGCACAGACTAC
AATAGCGGTGGTGCCGGCTATATATTTAGTAGGCAGACTTTGATAGAGTA
TTTTAGTATCTCAAAAACCTGTGAGTCTAAATCTAATGCAGAGGACGTTG
CAGTTGCAGCTTGTTTGAAGAAGGTTGGGATCACACCATCAGATACTCGA
GATGATGATGGTAGGGAGACATTCCATCCATTTGCGCCAGACTTTCATTT
AATACCGGGTAGTATTGGCAAAGACAATTGGTTATATCAAAGAAGTCGAT
GGGAGCTGGTAGAAGGTGTTGGGTGTTGTTCTAAATATTCGATTGCATTT
CATTATACAACTACTAAAAGAATGTATTTATTGAACTATTATTTATATGT
TTTGAAGAAAGGATTTTGAATGATGTTTAAAAGAAAAAGAAAAAATATAA
TTATTTTTGTCGTTGGCTGTTTCTGTGGTATTTATTTGGAAAATATATTG
AAGAAATATATGGATAGAAGATTCTACAGTAACCAAGAGGACACAAATAA
CACGTGGCATTTGGTACCTGAAAAGCACAACATCAAAAATGGGGCATTAT
ATTTTACTGGGAAAAATTTATATCACAAAAATAGTGAAGCTTCAAACTAT
TTTCATTCTATACCGATATTGTGTTGGGTATTGACAACTAAAGACACTTT
ACATACAAAAGCACAGGCAGTCAAAGACACTTGGGGTCAGCGCTGCCAAG
TACTTTTATTTTTCAGCTCAGAAGATGACCCAAGTTTCCCAGCTATATCT
TTAGATGTAAAAGAAGGGTACATGAACCTTCATGAAAAGGTTAAAGCAGC
TTGGCGGTACATTTTCAAACACCATTCCAAGGATGCCAGCTGGTTCATCA
AAGCTGACGATGACACATTCCTTATCATGGAAAATTTACGACATTTCTTA
TCCAGTTATTCTTCAAGTGATAAACTATTTTTCGGTCATAACTTGTGGCA
TCATAGCACAGACTACAATAGCGGTGGTGCCGGCTATATATTTAGTAGGC
AGACTTTGATAGAGTATTTTAGTATCTCAAAAACCTGTGAGTCTAAATCT
AATGCAGAGGACGTTGCAGTTGCAGCTTGTTTGAAGAAGGTTGGGATCAC
ACCATCAGATACTCGAGATGATGATGGTAGGGAGACATTCCATCCATTTG
CGCCAGACTTTCATTTAATACCGGGTAGTATTGGCAAAGACAATTGGTTA
TATCAAAGAAGTCGATGGGAGCTGGTAGAAGGTGTTGGGTGTTGTTCTAA
ATATTCGATTGCATTTCATTATACAACTACTAAAAGAATGTATTTATTGA
ACTATTATTTATATGTTTTGAAGAAAGGATTTTGAATGATGTTTAAAAGA
AAAAGAAAAAATATAATTATTTTTGTCGTTGGCTGTTTCTGTGGTATTTA
TTTGGAAAATATATTGAAGAAATATATGGATAGAAGATTCTACAGTAACC
AAGAGGACACAAATAACACGTGGCATTTGGTACCTGAAAAGCACAACATC
AAAAATGGGGCATTATATTTTACTGGGAAAAATTTATATCACAAAAATAG
TGAAGCTTCAAACTATTTTCATTCTATACCGATATTGTGTTGGGTATTGA
CAACTAAAGACACTTTACATACAAAAGCACAGGCAGTCAAAGACACTTGG
GGTCAGCGCTGCCAAGTACTTTTATTTTTCAGCTCAGAAGATGACCCAAG
TTTCCCAGCTATATCTTTAGATGTAAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001115XLOC_001115Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002139-proteinTCONS_00002139-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002139-exon-sc0000018-1575043694:383575..383596TCONS_00002139-exon-sc0000018-1575043694:383575..383596Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1575043694:377687..378105TCONS_00002139-exon-sc0000018-1575043694:377687..378105Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1575043694:376201..377431TCONS_00002139-exon-sc0000018-1575043694:376201..377431Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1510915933:383575..383596TCONS_00002139-exon-sc0000018-1510915933:383575..383596Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1510915933:377687..378105TCONS_00002139-exon-sc0000018-1510915933:377687..378105Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1510915933:376201..377431TCONS_00002139-exon-sc0000018-1510915933:376201..377431Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1491911889:383575..383596TCONS_00002139-exon-sc0000018-1491911889:383575..383596Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1491911889:377687..378105TCONS_00002139-exon-sc0000018-1491911889:377687..378105Clytia hemisphaericaexon
TCONS_00002139-exon-sc0000018-1491911889:376201..377431TCONS_00002139-exon-sc0000018-1491911889:376201..377431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:376201..383596 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.6375 3.28701 2.22402 2.41762 1.96215 1.83478 4.2401 3.5609 2.71786 2.7337 4.10294 2.55176 2.17727 1.77539 1.58354 1.86194 2.4758 2.23907 1.98493 2.77844 2.29773 2.43593 3.86483 3.46314 4.19182 5.36766 1.06405 0.922661 1.80335 1.83732
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003378Fringe-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
BLAST of TCONS_00002139 vs. Swiss-Prot (Human)
Match: C1GLT (Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Homo sapiens GN=C1GALT1 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.110e-61
Identity = 111/309 (35.92%), Postives = 169/309 (54.69%), Query Frame = 3
Query:   69 NIIIFVVGCFCGIYL-ENILKKYMDRRFYSNQEDTNNTWHLVPEKHNIKN---GALYFTGKNLYHKNSE---ASNYFHSIPILCWVLTTKDTLHTKAQAVKDTWGQRCQVLLFFSSEDDPSFPAISLDVKEGYMNLHEKVKAAWRYIFKHHSKDASWFIKADDDTFLIMENLRHFLSSYSSSDKLFFGHNLWHH-STDYNSGGAGYIFSRQTLIEYFSISKT--CESKSNAEDVAVAACLKKVGITPSDTRDDDGRETFHPFAPDFHLIPGSIGKDNWLYQRSRWELVEGVGCCSKYSIAFHYTTTKRM 965
            N + F+ G   G  L   +    +  +  +     +N  H      N +N   G + F   +  HK+     A N +  + ILCWV+T    L  KA+ VK TW QRC  +LF SSE++  FPA+ L  KEG   L+ K   A++Y+ +H+ +DA WF+KADDDT++I++NLR  LS Y   + ++FG     +    Y SGGAGY+ S++ L  +    KT  C   S+ ED+A+  C++ + +   D+RD  G+ETFHPF P+ HLI G + +  W +  + +  VEG GCCS  +++FHY  +  M
Sbjct:    8 NFLTFLCGSAIGFLLCSQLFSILLGEKVDTQPNVLHNDPHARHSDDNGQNHLEGQMNFNADSSQHKDENTDIAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTKEGRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRFKPYVKQGYMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSIEDLALGRCMEIMNVEAGDSRDTIGKETFHPFVPEHHLIKGYLPRTFWYWNYNYYPPVEGPGCCSDLAVSFHYVDSTTM 316          
The following BLAST results are available for this feature:
BLAST of TCONS_00002139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C1GLT1.110e-6135.92Glycoprotein-N-acetylgalactosamine 3-beta-galactos... [more]
back to top